Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008461

Physical Location & Seq

Genomic Coordinates Reverse (-)

16855830 .. 16861216

Gene Structure 5387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG176900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGAGGTTGCTTCTAGAGGAGCGTGACCCCCCAGCAATTCCCCAAGAGAGCCTGTCTGAAGCACCTCCTTTTGATGAGGTGGACATACAAGCTCTAGCACACGCTGTAGAACTTACAAGGCAGGGAGCAGTAGATAGTTTGAGATTTGCTAAGGGTGATTTGTTTCAGGCTTTTCAGAACGAAATATGTAGAATGAGAGTTGATGTTACCCTGCTTGATGAGCTTGTTCGCGAGTACTGTGTTTATAGGGGCATTGTGGATGCTGGTCTTGCATCTTCTTCTGTTGTACCTGGAATGCAAAGCCCTTCCAAATCTATGAAAGTTGACCAATCAGTGGCTGGTTATTCTTTGTCAAGAGACTGTTCTCACGAGGTGGAATATGCCAGCAAAAATTCTGATGGTGAAGTTTCCATTAGTACTGATCAGCGACGTGGTTCCCCTGAAAAGAATTCTGATGTGGCTAGCATGGATGGAATCGAGGTCGACCTACGTTATGCTTGTGAGTCAACCAGCAACCAAGAAGATTGTAGCACCAGTGGATCACATCAGCCTGAAAATCTTAGAGTTCCACAAAGAAACAGAACCAATGTAAGTGCAGAAAGAAGTAAGCGCAAGCGATGGAGGGGAAGACAAGATGATCTTGGGTTTATTCCTGGTGTTTCTTGTAATCAAATAAGTAAAGGAATAAGCTCAAATTCCCTGGTTTCCGATACATTGTCTTCAAAGGAGAAGCAGGCTTCAGATTGTTTAGTTGTAGATGTTAACAACGTGGATAAATATGAGATTGTGCTTGAGATGAAGGAACTAGCTAGCAAAGGAATGGCTGCAGAGGTTGTAGAAGGAGTCAACTCGATGGACCCGAACTTTTTTGGGCAAAATCCTCTTTTGCTGTTTCAACTTAAGCAGGTTGAATTCCTTAAGCTTGTCAGCTCTGGTGACTGTTCTAGTGCTCTGAGGGTTGCATGCTCTCATCTTGGTCCTTTGGCTGCTAGTAACCCATCTTTACTGAAATCCTTGAAGGAGACTTTATTAGCACTGCTCCAACCTGATGAAGATGCACTTCGAAAAGGCTTCCCCTTGCATGCTCTTGCAACTTCACTTCAGGTTGCAATTGGGAGGAGGCTTGGCATTGATGAACCACAGCTTATGAAAATAATGAGAGCAACCCTTCACACACATAATGAGTGGTTTAAACTTCAAATGTGTAAGGATCACTTTGAAAGTCTATTGAGGATTGATTTCTTGAAAGAAGTTAATATGCCTTCACTTGCTGCTGCTGCAACATCAAAGTCAAATGCTGATAGTTGCTCTAATGGGTCTTCCCAAGTTACAATATCTTCAAGCACCAGGATGGTGGAAGATGGAAGCAGCCTGTCTCAAGTGTCATCGAGAGATGTTGACGAGAATGCAATACTGAAAGTAATGGAATTTCTAGCTCTGCCGAGAGCAGATGCCATCCATCTTCTTGGACAGTACAATGGAAATGCTGAGACGGTCATTCAGCAAATATTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH

Protein Analysis

505

Amino Acids

55.34

Weight (kDa)

5.16

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66810 AT5G66810 AT5G66810 AT5G66810
fragaria_vesca	FvH4_1g15790 FvH4_1g15790 FvH4_1g15790
malus_domestica	MD00G1045200.v1.1 MD02G1169700.v1.1
prunus_persica	Prupe.7G135500_v2.0.a1 Prupe.7G135500_v2.0.a1
pyrus_communis	pycom02g13670 pycom15g24520
rosa_chinensis	RchiOBHm_Chr2g0105071
rosa_laevigata	RLG00000017400
rosa_multiflora	Rmu_sc0005160.1_g000010
rosa_roxburghii	Rroxscaffold_2G00138450
rosa_rugosa	Rorug02G0126100
rosa_samantha	Rh2AG176900 Rh2BG184900 Rh2CG181200 Rh2DG183000
rosa_wichuraiana	Rw2G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	895
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	231
AclWI	GGATC	2 cut(s)	547, 1218
AcsI	RAATTY	5 cut(s)	391, 448, 694, 911, 1427
AcuI	CTGAAG	3 cut(s)	78, 723, 1085
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	4 cut(s)	236, 288, 418, 1475
AfiI	CCNNNNNNNGG	1 cut(s)	334
AflII	CTTAAG	2 cut(s)	899, 917
AgsI	TTSAA	8 cut(s)	723, 896, 911, 1018, 1199, 1220, 1246, 1341
AjiI	CACGTC	1 cut(s)	431
AjnI	CCWGG	4 cut(s)	289, 652, 699, 1346
AluBI	AGCT	8 cut(s)	92, 223, 690, 809, 922, 930, 1144, 1436
AluI	AGCT	8 cut(s)	92, 223, 690, 809, 922, 930, 1144, 1436
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	4 cut(s)	351, 1016, 1380, 1484
AlwI	GGATC	2 cut(s)	547, 1218
AlwNI	CAGNNNCTG	1 cut(s)	338
ApeKI	GCWGC	6 cut(s)	824, 986, 1271, 1274, 1277, 1368
ApoI	RAATTY	5 cut(s)	391, 448, 694, 911, 1427
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	856, 977
AsuHPI	GGTGA	3 cut(s)	167, 413, 947
AsuII	TTCGAA	1 cut(s)	1063
AsuNHI	GCTAGC	2 cut(s)	461, 809
AvaII	GGWCC	2 cut(s)	856, 977
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	3 cut(s)	634, 711, 1311
Bbv12I	GWGCWC	1 cut(s)	952
BbvI	GCAGC	6 cut(s)	811, 973, 1258, 1261, 1264, 1380
BccI	CCATC	9 cut(s)	392, 464, 612, 847, 1006, 1345, 1355, 1463, 1467
BciT130I	CCWGG	4 cut(s)	291, 654, 701, 1348
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	4 cut(s)	351, 1016, 1380, 1484
BfaI	CTAG	8 cut(s)	14, 95, 462, 806, 810, 945, 990, 1433
BfmI	CTRYAG	2 cut(s)	105, 825
BfrI	CTTAAG	2 cut(s)	899, 917
BfuAI	ACCTGC	1 cut(s)	895
BisI	GCNGC	6 cut(s)	825, 987, 1272, 1275, 1278, 1369
BlsI	GCNGC	6 cut(s)	826, 988, 1273, 1276, 1279, 1370
BmcAI	AGTACT	2 cut(s)	236, 418
Bme1390I	CCNGG	4 cut(s)	291, 654, 701, 1348
Bme18I	GGWCC	2 cut(s)	856, 977
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	856, 977
BmiI	GGNNCC	2 cut(s)	436, 858
BmrFI	CCNGG	4 cut(s)	291, 654, 701, 1348
BmsI	GCATC	4 cut(s)	250, 281, 1045, 1441
BmtI	GCTAGC	2 cut(s)	465, 813
BpiI	GAAGAC	3 cut(s)	634, 711, 1311
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	1063
BpuEI	CTTGAG	2 cut(s)	812, 1362
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	534
BseBI	CCWGG	4 cut(s)	291, 654, 701, 1348
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	4 cut(s)	265, 475, 1356, 1455
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	944, 1479
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	2 cut(s)	32, 1132
BseXI	GCAGC	6 cut(s)	811, 973, 1258, 1261, 1264, 1380
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	952
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	4 cut(s)	351, 1016, 1380, 1484
BsmBI	CGTCTC	1 cut(s)	1484
BsmI	GAATGC	2 cut(s)	300, 1411
Bsp119I	TTCGAA	1 cut(s)	1063
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	4 cut(s)	421, 539, 637, 1210
Bsp68I	TCGCGA	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	945, 1480
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	436, 858
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	895
BspOI	GCTAGC	2 cut(s)	465, 813
BspPI	GGATC	2 cut(s)	547, 1218
BspT104I	TTCGAA	1 cut(s)	1063
BspTI	CTTAAG	2 cut(s)	899, 917
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	4 cut(s)	421, 539, 637, 1210
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	4 cut(s)	291, 654, 701, 1348
Bst4CI	ACNGT	5 cut(s)	239, 362, 941, 1473, 1495
BstAFI	CTTAAG	2 cut(s)	899, 917
BstBI	TTCGAA	1 cut(s)	1063
BstC8I	GCNNGC	7 cut(s)	385, 463, 614, 735, 811, 964, 1083
BstDEI	CTNAG	4 cut(s)	150, 560, 953, 1488
BstF5I	GGATG	4 cut(s)	265, 475, 1356, 1455
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	4 cut(s)	424, 542, 640, 1213
BstMAI	GTCTC	4 cut(s)	351, 1016, 1380, 1484
BstMBI	GATC	4 cut(s)	421, 539, 637, 1210
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 269, 1277
BstNI	CCWGG	4 cut(s)	291, 654, 701, 1348
BstNSI	RCATGY	2 cut(s)	966, 1085
BstSCI	CCNGG	4 cut(s)	289, 652, 699, 1346
BstSFI	CTRYAG	2 cut(s)	105, 825
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	6 cut(s)	811, 973, 1258, 1261, 1264, 1380
BstV2I	GAAGAC	3 cut(s)	634, 711, 1311
BstXI	CCANNNNNNTGG	2 cut(s)	1354, 1466
BtgZI	GCGATG	1 cut(s)	631
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	4 cut(s)	265, 475, 1356, 1455
BtsI	GCAGTG	1 cut(s)	1034
BtsIMutI	CAGTG	3 cut(s)	339, 541, 1034
BtuMI	TCGCGA	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	7 cut(s)	385, 463, 614, 735, 811, 964, 1083
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	2 cut(s)	856, 977
Csp6I	GTAC	4 cut(s)	235, 287, 417, 1474
CviAII	CATG	3 cut(s)	466, 963, 1082
CviQI	GTAC	4 cut(s)	235, 287, 417, 1474
DdeI	CTNAG	4 cut(s)	150, 560, 953, 1488
DpnI	GATC	4 cut(s)	423, 541, 639, 1212
DpnII	GATC	4 cut(s)	421, 539, 637, 1210
DraI	TTTAAA	1 cut(s)	1192
DraIII	CACNNNGTG	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	856, 977
Eco57I	CTGAAG	3 cut(s)	78, 723, 1085
EcoRI	GAATTC	2 cut(s)	448, 911
EcoRII	CCWGG	4 cut(s)	289, 652, 699, 1346
Esp3I	CGTCTC	1 cut(s)	1484
FaeI	CATG	3 cut(s)	469, 966, 1085
FalI	AAGNNNNNCTT	6 cut(s)	624, 656, 1044, 1076, 1199, 1231
FatI	CATG	3 cut(s)	465, 962, 1081
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	6 cut(s)	825, 987, 1272, 1275, 1278, 1369
FokI	GGATG	4 cut(s)	272, 482, 1363, 1442
Fsp4HI	GCNGC	6 cut(s)	825, 987, 1272, 1275, 1278, 1369
FspBI	CTAG	8 cut(s)	14, 95, 462, 806, 810, 945, 990, 1433
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	6 cut(s)	825, 987, 1272, 1275, 1278, 1369
GsaI	CCCAGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	3 cut(s)	469, 966, 1085
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	6 cut(s)	325, 484, 507, 763, 847, 1399
HindII	GTYRAC	6 cut(s)	325, 484, 507, 763, 847, 1399
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	3 cut(s)	474, 503, 843
HpaI	GTTAAC	1 cut(s)	763
HphI	GGTGA	3 cut(s)	167, 413, 947
Hpy166II	GTNNAC	7 cut(s)	82, 325, 484, 507, 763, 847, 1399
Hpy188I	TCNGA	7 cut(s)	58, 177, 397, 454, 709, 742, 954
Hpy188III	TCNNGA	6 cut(s)	14, 230, 354, 368, 1243, 1389
Hpy8I	GTNNAC	7 cut(s)	82, 325, 484, 507, 763, 847, 1399
Hpy99I	CGWCG	1 cut(s)	432
HpyAV	CCTTC	6 cut(s)	315, 793, 833, 1012, 1178, 1272
HpyCH4III	ACNGT	5 cut(s)	239, 362, 941, 1473, 1495
HpyCH4IV	ACGT	3 cut(s)	430, 490, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 269, 1277
HpyF3I	CTNAG	4 cut(s)	150, 560, 953, 1488
HpySE526I	ACGT	3 cut(s)	430, 490, 768
Hsp92II	CATG	3 cut(s)	469, 966, 1085
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	421, 539, 637, 1210
LmnI	GCTCC	3 cut(s)	19, 125, 1044
Lsp1109I	GCAGC	6 cut(s)	811, 973, 1258, 1261, 1264, 1380
LweI	GCATC	4 cut(s)	250, 281, 1045, 1441
MaeI	CTAG	8 cut(s)	14, 95, 462, 806, 810, 945, 990, 1433
MaeII	ACGT	3 cut(s)	430, 490, 768
MaeIII	GTNAC	5 cut(s)	23, 205, 935, 992, 1327
MalI	GATC	4 cut(s)	423, 541, 639, 1212
MboI	GATC	4 cut(s)	421, 539, 637, 1210
MfeI	CAATTG	1 cut(s)	1110
MhlI	GDGCHC	1 cut(s)	952
MluCI	AATT	7 cut(s)	36, 391, 448, 694, 911, 1110, 1427
MlyI	GAGTC	2 cut(s)	512, 852
MmeI	TCCRAC	1 cut(s)	1066
MseI	TTAA	6 cut(s)	762, 900, 918, 1191, 1254, 1516
MslI	CAYNNNNRTG	1 cut(s)	1349
MspCI	CTTAAG	2 cut(s)	899, 917
MspR9I	CCNGG	4 cut(s)	291, 654, 701, 1348
MssI	GTTTAAAC	1 cut(s)	1192
MunI	CAATTG	1 cut(s)	1110
Mva1269I	GAATGC	2 cut(s)	300, 1411
MvaI	CCWGG	4 cut(s)	291, 654, 701, 1348
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	220, 269, 1277
NdeII	GATC	4 cut(s)	421, 539, 637, 1210
NheI	GCTAGC	2 cut(s)	461, 809
NlaIII	CATG	3 cut(s)	469, 966, 1085
NlaIV	GGNNCC	2 cut(s)	436, 858
NmeAIII	GCCGAG	1 cut(s)	1467
NmuCI	GTSAC	2 cut(s)	23, 935
NruI	TCGCGA	1 cut(s)	231
NspI	RCATGY	2 cut(s)	966, 1085
NspV	TTCGAA	1 cut(s)	1063
PaeI	GCATGC	2 cut(s)	966, 1085
PcsI	WCGNNNNNNNCGW	1 cut(s)	857
PctI	GAATGC	2 cut(s)	300, 1411
PfeI	GAWTC	1 cut(s)	474
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	6 cut(s)	826, 988, 1273, 1276, 1279, 1370
PleI	GAGTC	2 cut(s)	511, 851
PmeI	GTTTAAAC	1 cut(s)	1192
PpsI	GAGTC	2 cut(s)	511, 851
Psp6I	CCWGG	4 cut(s)	289, 652, 699, 1346
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	4 cut(s)	289, 652, 699, 1346
PspN4I	GGNNCC	2 cut(s)	436, 858
PspPI	GGNCC	2 cut(s)	856, 977
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	231
RsaI	GTAC	4 cut(s)	236, 288, 418, 1475
RsaNI	GTAC	4 cut(s)	235, 287, 417, 1474
RseI	CAYNNNNRTG	1 cut(s)	1349
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	6 cut(s)	762, 900, 918, 1191, 1254, 1516
SatI	GCNGC	6 cut(s)	825, 987, 1272, 1275, 1278, 1369
Sau3AI	GATC	4 cut(s)	421, 539, 637, 1210
Sau96I	GGNCC	2 cut(s)	856, 977
ScaI	AGTACT	2 cut(s)	236, 418
SchI	GAGTC	2 cut(s)	512, 852
ScrFI	CCNGG	4 cut(s)	291, 654, 701, 1348
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	4 cut(s)	250, 281, 1045, 1441
SfcI	CTRYAG	2 cut(s)	105, 825
SfuI	TTCGAA	1 cut(s)	1063
SinI	GGWCC	2 cut(s)	856, 977
SmiMI	CAYNNNNRTG	1 cut(s)	1349
SmlI	CTYRAG	4 cut(s)	791, 899, 917, 1377
SmoI	CTYRAG	4 cut(s)	791, 899, 917, 1377
SphI	GCATGC	2 cut(s)	966, 1085
Sse9I	AATT	7 cut(s)	36, 391, 448, 694, 911, 1110, 1427
SspI	AATATT	1 cut(s)	1509
SspMI	CTAG	8 cut(s)	14, 95, 462, 806, 810, 945, 990, 1433
StyD4I	CCNGG	4 cut(s)	289, 652, 699, 1346
TaaI	ACNGT	5 cut(s)	239, 362, 941, 1473, 1495
TaiI	ACGT	3 cut(s)	433, 493, 771
TaqI	TCGA	5 cut(s)	477, 483, 851, 1063, 1388
TasI	AATT	7 cut(s)	36, 391, 448, 694, 911, 1110, 1427
TatI	WGTACW	3 cut(s)	234, 416, 1473
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	6 cut(s)	762, 900, 918, 1191, 1254, 1516
Tru9I	TTAA	6 cut(s)	762, 900, 918, 1191, 1254, 1516
TscAI	CASTG	3 cut(s)	339, 541, 1041
TseFI	GTSAC	2 cut(s)	23, 935
TseI	GCWGC	6 cut(s)	824, 986, 1271, 1274, 1277, 1368
Tsp45I	GTSAC	2 cut(s)	23, 935
TspDTI	ATGAA	5 cut(s)	332, 812, 1065, 1149, 1163
TspRI	CASTG	3 cut(s)	339, 541, 1041
Van91I	CCANNNNNTGG	1 cut(s)	334
Vha464I	CTTAAG	2 cut(s)	899, 917
VpaK11BI	GGWCC	2 cut(s)	856, 977
XapI	RAATTY	5 cut(s)	391, 448, 694, 911, 1427
XbaI	TCTAGA	1 cut(s)	13
XceI	RCATGY	2 cut(s)	966, 1085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	8 cut(s)	14, 95, 462, 806, 810, 945, 990, 1433
ZrmI	AGTACT	2 cut(s)	236, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.