Rorug02G0126100

CTLH/CRA C-terminal to LisH motif domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008461
Physical Location & Seq
Reverse (-)
10867460 .. 10869212
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0126100.1

Sequence Viewer

Length: 876 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATCCTTTGCAGGCAGAGCAGTACCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTTAAGGAGCTTTACTACAACAAGGGAGTTAGGTCCCCAACTGCAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAACGGTACGGAAAGATTGAGGGCAAGAATGTCTTTTACTGGTTCCAGAACCACAAGGCTCGGGAGAGGCAGAAGAAGAGGTTCACTTCGGATGTTCATGCGCCCATGCAAAGATCAGGGCTTGTTGGAAATGATAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACATGAACAACAAGTACTCTAACATTTGTCAAGGGGTTTCTTCTGCTTCTGCTTCTTCAGCTGGTGTGATCGCTTTTAACGGGCAGATGGGGAACTATGGTGCTTATGGATCTATGAACATGGAGAAGAGTTTTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTGGTATTGGTGGATCCATTAGTCACAATTTTGGGTCATGGGTCGGCTGCAGTGTTGACCCATATTCCTCCTCTAGTACTAGTACTACTTTCCTTGACATGAATGAAGAACAAACTTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCCCTATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGAAGGTGGCGGCTACGGCTACTACTCCGGTGGCTGGGGCGGTTACAACGGTGGCTCTCGCACTTCCCTTGAGCTCAGCCTCAACTCCTACGGCTACAACACTGAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

291

Amino Acids

32.05

Weight (kDa)

6.0

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 6e-12 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AciI CCGC 2 cut(s) 774, 804
AclWI GGATC 5 cut(s) 194, 369, 490, 555, 568
AcsI RAATTY 1 cut(s) 869
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 6 cut(s) 91, 209, 343, 389, 625, 631
AfiI CCNNNNNNNGG 2 cut(s) 725, 798
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 2 cut(s) 519, 701
AhlI ACTAGT 2 cut(s) 539, 626
AjnI CCWGG 2 cut(s) 92, 690
AluBI AGCT 5 cut(s) 136, 199, 434, 527, 838
AluI AGCT 5 cut(s) 136, 199, 434, 527, 838
Alw21I GWGCWC 1 cut(s) 840
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 5 cut(s) 194, 369, 490, 555, 568
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 50, 594
ApoI RAATTY 1 cut(s) 869
Asp700I GAANNNNTTC 3 cut(s) 281, 541, 705
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 680, 740
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 357
BamHI GGATCC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 840
BbsI GAAGAC 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 2 cut(s) 62, 581
BccI CCATC 2 cut(s) 26, 454
BceAI ACGGC 2 cut(s) 796, 871
BciT130I CCWGG 2 cut(s) 94, 692
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 539, 626
BfaI CTAG 3 cut(s) 540, 621, 627
BfmI CTRYAG 3 cut(s) 108, 168, 595
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 3 cut(s) 51, 595, 775
BlpI GCTNAGC 1 cut(s) 839
BlsI GCNGC 3 cut(s) 52, 596, 776
BmcAI AGTACT 3 cut(s) 389, 625, 631
Bme1390I CCNGG 3 cut(s) 55, 94, 692
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 5 cut(s) 6, 161, 245, 343, 562
BmrFI CCNGG 3 cut(s) 55, 94, 692
BpiI GAAGAC 1 cut(s) 758
BpmI CTGGAG 2 cut(s) 179, 549
Bpu1102I GCTNAGC 1 cut(s) 839
BpuEI CTTGAG 1 cut(s) 854
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 27, 762
BsaWI WCCGGW 1 cut(s) 791
Bsc4I CCNNNNNNNGG 2 cut(s) 725, 798
Bse1I ACTGG 2 cut(s) 245, 553
Bse21I CCTNAGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 2 cut(s) 94, 692
BseDI CCNNGG 2 cut(s) 27, 762
BseGI GGATG 3 cut(s) 37, 69, 298
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 725, 798
BseMII CTCAG 3 cut(s) 348, 537, 853
BseNI ACTGG 2 cut(s) 245, 553
BseRI GAGGAG 2 cut(s) 607, 693
BseXI GCAGC 2 cut(s) 62, 581
BseYI CCCAGC 2 cut(s) 15, 798
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 792
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 725, 798
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 840
Bsp143I GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
Bsp1720I GCTNAGC 1 cut(s) 839
BspACI CCGC 2 cut(s) 774, 804
BspCNI CTCAG 3 cut(s) 349, 536, 852
BspLI GGNNCC 5 cut(s) 6, 161, 245, 343, 562
BspMAI CTGCAG 2 cut(s) 172, 599
BspPI GGATC 5 cut(s) 194, 369, 490, 555, 568
BspT107I GGYRCC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 128
BsrI ACTGG 2 cut(s) 245, 553
BssECI CCNNGG 2 cut(s) 27, 762
BssMI GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
Bst2UI CCWGG 2 cut(s) 94, 692
Bst4CI ACNGT 4 cut(s) 207, 714, 728, 815
Bst6I CTCTTC 2 cut(s) 272, 494
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 357, 523, 839
BstF5I GGATG 3 cut(s) 37, 69, 298
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 8 cut(s) 115, 189, 317, 364, 444, 485, 563, 688
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
BstMWI GCNNNNNNNGC 3 cut(s) 84, 431, 780
BstNI CCWGG 2 cut(s) 94, 692
BstSCI CCNGG 3 cut(s) 53, 92, 690
BstSFI CTRYAG 3 cut(s) 108, 168, 595
BstV1I GCAGC 2 cut(s) 62, 581
BstV2I GAAGAC 1 cut(s) 758
BstX2I RGATCY 3 cut(s) 186, 482, 560
BstYI RGATCY 3 cut(s) 186, 482, 560
Bsu36I CCTNAGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 37, 69, 298
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 3 cut(s) 604, 710, 864
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 6 cut(s) 90, 208, 342, 388, 624, 630
CviAII CATG 8 cut(s) 299, 307, 376, 493, 585, 646, 667, 748
CviQI GTAC 6 cut(s) 90, 208, 342, 388, 624, 630
DdeI CTNAG 3 cut(s) 357, 523, 839
DpnI GATC 8 cut(s) 114, 188, 316, 363, 443, 484, 562, 687
DpnII GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
Eam1104I CTCTTC 2 cut(s) 272, 494
EarI CTCTTC 2 cut(s) 272, 494
Ecl136II GAGCTC 1 cut(s) 838
Eco24I GRGCYC 1 cut(s) 840
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 838
Eco57I CTGAAG 1 cut(s) 414
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 838
EcoO109I RGGNCCY 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 869
EcoRII CCWGG 2 cut(s) 92, 690
EcoT38I GRGCYC 1 cut(s) 840
FaeI CATG 8 cut(s) 302, 310, 379, 496, 588, 649, 670, 751
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 145
FatI CATG 8 cut(s) 298, 306, 375, 492, 584, 645, 666, 747
Fnu4HI GCNGC 3 cut(s) 51, 595, 775
FokI GGATG 3 cut(s) 44, 56, 305
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 3 cut(s) 51, 595, 775
FspBI CTAG 3 cut(s) 540, 621, 627
GlaI GCGC 1 cut(s) 303
GluI GCNGC 3 cut(s) 51, 595, 775
GsaI CCCAGC 2 cut(s) 19, 802
GsuI CTGGAG 2 cut(s) 179, 549
HapII CCGG 2 cut(s) 54, 792
HhaI GCGC 1 cut(s) 304
Hin1II CATG 8 cut(s) 302, 310, 379, 496, 588, 649, 670, 751
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 2 cut(s) 54, 792
HphI GGTGA 2 cut(s) 680, 740
Hpy166II GTNNAC 3 cut(s) 99, 285, 604
Hpy188I TCNGA 5 cut(s) 117, 183, 292, 763, 875
Hpy188III TCNNGA 2 cut(s) 247, 263
Hpy8I GTNNAC 3 cut(s) 99, 285, 604
HpyAV CCTTC 2 cut(s) 716, 761
HpyCH4III ACNGT 4 cut(s) 207, 714, 728, 815
HpyCH4V TGCA 5 cut(s) 78, 170, 310, 597, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 431, 780
HpyF3I CTNAG 3 cut(s) 357, 523, 839
Hsp92II CATG 8 cut(s) 302, 310, 379, 496, 588, 649, 670, 751
HspAI GCGC 1 cut(s) 302
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 2 cut(s) 62, 581
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 540, 621, 627
MaeIII GTNAC 2 cut(s) 569, 806
MalI GATC 8 cut(s) 114, 188, 316, 363, 443, 484, 562, 687
MboI GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
MboII GAAGA 8 cut(s) 286, 289, 405, 420, 511, 665, 695, 763
MfeI CAATTG 1 cut(s) 346
MflI RGATCY 3 cut(s) 186, 482, 560
MhlI GDGCHC 1 cut(s) 840
MluCI AATT 3 cut(s) 346, 574, 869
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 307
MroXI GAANNNNTTC 3 cut(s) 281, 541, 705
MseI TTAA 3 cut(s) 129, 372, 450
MspA1I CMGCKG 3 cut(s) 199, 434, 527
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 2 cut(s) 54, 792
MspR9I CCNGG 3 cut(s) 55, 94, 692
MunI CAATTG 1 cut(s) 346
MvaI CCWGG 2 cut(s) 94, 692
MwoI GCNNNNNNNGC 3 cut(s) 84, 431, 780
NciI CCSGG 1 cut(s) 55
NdeII GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
NlaIII CATG 8 cut(s) 302, 310, 379, 496, 588, 649, 670, 751
NlaIV GGNNCC 5 cut(s) 6, 161, 245, 343, 562
NmuCI GTSAC 1 cut(s) 569
PdmI GAANNNNTTC 3 cut(s) 281, 541, 705
PfeI GAWTC 2 cut(s) 123, 178
PkrI GCNGC 3 cut(s) 52, 596, 776
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 840
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 92, 690
PspFI CCCAGC 2 cut(s) 15, 798
PspGI CCWGG 2 cut(s) 92, 690
PspN4I GGNNCC 5 cut(s) 6, 161, 245, 343, 562
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsrI GAACNNNNNNTAC 4 cut(s) 371, 403, 529, 561
PstI CTGCAG 2 cut(s) 172, 599
PsuI RGATCY 3 cut(s) 186, 482, 560
PvuII CAGCTG 3 cut(s) 199, 434, 527
RsaI GTAC 6 cut(s) 91, 209, 343, 389, 625, 631
RsaNI GTAC 6 cut(s) 90, 208, 342, 388, 624, 630
SacI GAGCTC 1 cut(s) 840
SaqAI TTAA 3 cut(s) 129, 372, 450
SatI GCNGC 3 cut(s) 51, 595, 775
Sau3AI GATC 8 cut(s) 112, 186, 314, 361, 441, 482, 560, 685
Sau96I GGNCC 1 cut(s) 159
ScaI AGTACT 3 cut(s) 389, 625, 631
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 3 cut(s) 55, 94, 692
SduI GDGCHC 1 cut(s) 840
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 3 cut(s) 108, 168, 595
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 128, 833
SmoI CTYRAG 2 cut(s) 128, 833
SpeI ACTAGT 2 cut(s) 539, 626
Sse9I AATT 3 cut(s) 346, 574, 869
SsiI CCGC 2 cut(s) 774, 804
SspMI CTAG 3 cut(s) 540, 621, 627
SstI GAGCTC 1 cut(s) 840
StyD4I CCNGG 3 cut(s) 53, 92, 690
TaaI ACNGT 4 cut(s) 207, 714, 728, 815
TasI AATT 3 cut(s) 346, 574, 869
TatI WGTACW 3 cut(s) 387, 623, 629
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 2 cut(s) 123, 178
Tru1I TTAA 3 cut(s) 129, 372, 450
Tru9I TTAA 3 cut(s) 129, 372, 450
TscAI CASTG 3 cut(s) 604, 717, 871
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 50, 594
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 7 cut(s) 287, 392, 503, 655, 662, 666, 764
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 3 cut(s) 604, 717, 871
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 869
XmnI GAANNNNTTC 3 cut(s) 281, 541, 705
XspI CTAG 3 cut(s) 540, 621, 627
ZrmI AGTACT 3 cut(s) 389, 625, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.