Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004214

Physical Location & Seq

Genomic Coordinates Reverse (-)

8359945 .. 8361326

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1045600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAAGTCCAACAATGCTGCAAACGGGTTTCATTGGAACTATTACTAAAAGGGATAGTTGACTCTTCTAAGAGTGCAGTGAAAGCTGTTCAGGTTAAGGTCAGGCATGTTGTCTCTCCAAACAAACGAAGATACCAGGAAGGGGGATTTGATTTGGACAAGACTTATATTACAGAGAACATAATTGCCATGGGATTCCCTGCTGGTGATATGAGCTCTGGCTTTTTCAGATATGTTGAGGGCAAGTACAAAGTATATAACCTTTGTTCTGAAAGGCTGTATGACGCGTCTTTATTTGAAGGAAAGGTGAGTCATGATTTGTCACTTATGGTTGTGCTAATGATTTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0009267 GO:0009605 GO:0009628 GO:0009651 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753

KEGG Pathways

Metabolic & Signaling

ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230

Pfam Domains

Protein Families

DSPc

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

9.17

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004214)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16580 FvH4_1g16580 FvH4_1g16580 FvH4_1g16580 FvH4_1g16580 FvH4_1g16580
malus_domestica	MD00G1045600.v1.1 MD02G1177900.v1.1 MD15G1287800.v1.1
prunus_persica	Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1
pyrus_communis	pycom02g14390 pycom15g25130
rosa_chinensis	RchiOBHm_Chr2g0106491
rosa_laevigata	RLG00000017506
rosa_multiflora	Rmu_co8516909.1_g000001 Rmu_sc0004015.1_g000018
rosa_roxburghii	Rroxscaffold_2G00137130
rosa_rugosa	Rorug02G0135600 Rorug02G0135700
rosa_samantha	Rh2AG187200 Rh2BG198000 Rh2CG192200 Rh2DG193300
rosa_wichuraiana	Rw2G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	86, 216
AluI	AGCT	2 cut(s)	86, 216
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	218, 319
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	287
BstMAI	GTCTC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
CciI	TCATGA	1 cut(s)	313
CseI	GACGC	2 cut(s)	276, 293
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	107, 190, 314
CviJI	RGCY	4 cut(s)	86, 216, 222, 277
CviKI_1	RGCY	4 cut(s)	86, 216, 222, 277
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	110, 193, 317
FatI	CATG	3 cut(s)	106, 189, 313
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	19
HgaI	GACGC	2 cut(s)	276, 293
Hin1II	CATG	3 cut(s)	110, 193, 317
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	62, 195, 310
HphI	GGTGA	2 cut(s)	218, 319
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	230, 271
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	134, 293
HpyCH4V	TGCA	2 cut(s)	21, 77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	110, 193, 317
LpnPI	CCDG	7 cut(s)	77, 88, 122, 149, 189, 204, 213
Lsp1109I	GCAGC	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	57, 141
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	1 cut(s)	183
MluI	ACGCGT	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	56, 319
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	1 cut(s)	232
MseI	TTAA	2 cut(s)	96, 352
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	189
NlaIII	CATG	3 cut(s)	110, 193, 317
NmuCI	GTSAC	1 cut(s)	321
NspI	RCATGY	1 cut(s)	110
PagI	TCATGA	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	2 cut(s)	56, 318
PpsI	GAGTC	2 cut(s)	56, 318
Psp124BI	GAGCTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	96, 352
SatI	GCNGC	1 cut(s)	19
SchI	GAGTC	2 cut(s)	56, 319
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	6 cut(s)	88, 96, 102, 218, 264, 309
Sse9I	AATT	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	189
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	2 cut(s)	96, 352
Tru9I	TTAA	2 cut(s)	96, 352
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	17, 21
TspRI	CASTG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.