Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004214

Physical Location & Seq

Genomic Coordinates Forward (+)

18110634 .. 18119697

Gene Structure 9064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG192200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGACATATATTACTGAAAATATAATTGCTATGGGTTTCCCAGCTGGAGATATAAGTTCTGGCTTTTTTGGATATGTTGAGGGATTTTATCGGAATCATATGGAAGAAGTGATCAGATTTTTTGAAACTCATCACAAGGGACATTATAAAGTGTACAATCTTTGTTCAGAGAGGTTATATGATGCATCGCGATTTGAGGGGAAGGCTGCAAGTTTCCCATTTGATGATCATAACTGCCCCCCAATCCAACTTATTGGATCCTTCTGTCAAAGTGCTCATTCATGGTTAAAGGAGGACATTGAAAATGTTGTGGTTGTTCATTGTAAAGCTGGTATGGCAAGGACAGGAGTAATGATTTGTAGCCTTCTCCTATACCTTAAGTTCTTTCCTACAGCTGAGGAGGCCATGTATTACTATAACCATAAAAGATGTGTAGATGGAAAGGCTCTGGTTCTTCCGAGTCAGATTAGGTACGTGAAATATTTTGACATTATCTTGAGAAACTTCAATGGAGAATGTCATCCTCGAAGGTGCATGCTCAGGGGATTCCGGATTCACAACTGCCCTCATTGGATTAGGCCCTCCATTACAGTCTCTGACCATAATGGAATTTTGTTCTCATCAAGAAAGCATCCAAAAACAAAAGATCTAATGCCAGAAGATTTCTGGATCAGTGCACGGAAGAAAGGGATTGTCGTTTTCGCTCTACCAGGGGAGCCTGGTCTAGCAGAGTTAGTGGGGGATTTCAAAATCTATTTCCATGAACGCCACGGAGATTTCTATTGCTGGTTAAATACGATGATAGAAAACAACAGAAAGTTCTTAAACGCAGATGATCTCGATGGTTTTGAGAAGAGAAAATTACCTTCTCCAAGATTTCAGGTTGAAGTGATCATGATAGATTATAATGGTACTTCTCCTACAATACCTAATTCTTCAAGTAAGAAACCCGACGGTAGCTCAAATGACGCCTCTGCTTCAAGTGGCGGTGATGCAGCCAATCTGAATCAAAGAAAAAGAGAAGATGGTGATGATGTATTTTCAGATAGTGAGGGAGAGGAGTCTGGGGATAGAAAGAGCAGGCTAGCAGAAGCTAATTCTAGAGCTGAGCTTACTGCGCTTGATCACTCGTCCAATACAACAGGAAAACAAATGGAAACTTCAGCTCAAACTGTGGATAGCACACAGAATGGTTCTTCTCACAAACAAACTTCTGATGGGGCAGGAAAATCTGGAGCAGAGGATATTAGGGCAATAGCTGCTGATGCTTCAGTTTTCTCTTTTGGGGATGAAGATTTTGACAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00562 ko01521 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230

Pfam Domains

Protein Families

DSPc

Protein Analysis

436

Amino Acids

49.03

Weight (kDa)

5.88

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tc-R-P	PF22785	72 - 124	5.3e-07	Polymorphic toxin system, DSP-PTPase phosphatase
PTEN2_C2	PF22918	176 - 303	5.2e-69	PTEN2, C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004214)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16580 FvH4_1g16580 FvH4_1g16580 FvH4_1g16580 FvH4_1g16580 FvH4_1g16580
malus_domestica	MD00G1045600.v1.1 MD02G1177900.v1.1 MD15G1287800.v1.1
prunus_persica	Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1 Prupe.6G230100_v2.0.a1
pyrus_communis	pycom02g14390 pycom15g25130
rosa_chinensis	RchiOBHm_Chr2g0106491
rosa_laevigata	RLG00000017506
rosa_multiflora	Rmu_co8516909.1_g000001 Rmu_sc0004015.1_g000018
rosa_roxburghii	Rroxscaffold_2G00137130
rosa_rugosa	Rorug02G0135600 Rorug02G0135700
rosa_samantha	Rh2AG187200 Rh2BG198000 Rh2CG192200 Rh2DG193300
rosa_wichuraiana	Rw2G014590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	147, 906
AccII	CGCG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	549
AciI	CCGC	1 cut(s)	987
AclWI	GGATC	3 cut(s)	252, 265, 677
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	1146, 1254
AcyI	GRCGYC	1 cut(s)	969
AfaI	GTAC	3 cut(s)	155, 473, 913
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	7 cut(s)	125, 302, 508, 748, 887, 939, 981
AjnI	CCWGG	2 cut(s)	709, 718
AluBI	AGCT	9 cut(s)	44, 329, 395, 960, 1094, 1106, 1111, 1166, 1259
AluI	AGCT	9 cut(s)	44, 329, 395, 960, 1094, 1106, 1111, 1166, 1259
Alw21I	GWGCWC	2 cut(s)	277, 679
Alw26I	GTCTC	1 cut(s)	598
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	3 cut(s)	252, 265, 677
AlwNI	CAGNNNCTG	1 cut(s)	596
Aor13HI	TCCGGA	1 cut(s)	549
AoxI	GGCC	2 cut(s)	402, 578
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	3 cut(s)	206, 995, 1259
ApoI	RAATTY	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	1 cut(s)	579
AsuHPI	GGTGA	2 cut(s)	1001, 1040
AsuNHI	GCTAGC	1 cut(s)	1084
BaeGI	GKGCMC	1 cut(s)	679
BamHI	GGATCC	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	277, 679
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	193, 1007, 1246
BccI	CCATC	4 cut(s)	431, 836, 1019, 1211
BciT130I	CCWGG	2 cut(s)	711, 720
BclI	TGATCA	4 cut(s)	111, 226, 891, 1123
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	3 cut(s)	725, 1085, 1101
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	377
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	3 cut(s)	207, 996, 1260
BlpI	GCTNAGC	1 cut(s)	1107
BlsI	GCNGC	3 cut(s)	208, 997, 1261
Bme1390I	CCNGG	2 cut(s)	711, 720
BmgT120I	GGNCC	1 cut(s)	579
BmiI	GGNNCC	2 cut(s)	259, 717
BmrFI	CCNGG	2 cut(s)	711, 720
BmsI	GCATC	5 cut(s)	172, 194, 640, 982, 1255
BmtI	GCTAGC	1 cut(s)	1088
BpmI	CTGGAG	2 cut(s)	66, 1254
Bpu10I	CCTNAGC	2 cut(s)	396, 539
Bpu1102I	GCTNAGC	1 cut(s)	1107
BpuEI	CTTGAG	1 cut(s)	517
BsaAI	YACGTR	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	969
BsaJI	CCNNGG	2 cut(s)	710, 769
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
BseAI	TCCGGA	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	711, 720
BseDI	CCNNGG	2 cut(s)	710, 769
BseGI	GGATG	3 cut(s)	520, 631, 1294
BseMII	CTCAG	3 cut(s)	387, 553, 1098
BseRI	GAGGAG	2 cut(s)	413, 1073
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	193, 1007, 1246
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	404, 580
BsiHKAI	GWGCWC	2 cut(s)	277, 679
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	404, 580
Bsp1286I	GDGCHC	2 cut(s)	277, 679
Bsp13I	TCCGGA	1 cut(s)	549
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
Bsp1720I	GCTNAGC	1 cut(s)	1107
Bsp68I	TCGCGA	1 cut(s)	190
BspACI	CCGC	1 cut(s)	987
BspANI	GGCC	2 cut(s)	404, 580
BspCNI	CTCAG	3 cut(s)	388, 552, 1099
BspEI	TCCGGA	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	2 cut(s)	259, 717
BspOI	GCTAGC	1 cut(s)	1088
BspPI	GGATC	3 cut(s)	252, 265, 677
BspTI	CTTAAG	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	710, 769
BssMI	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
BssNI	GRCGYC	1 cut(s)	969
Bst2UI	CCWGG	2 cut(s)	711, 720
Bst4CI	ACNGT	4 cut(s)	592, 956, 1174, 1304
Bst6I	CTCTTC	1 cut(s)	848
BstACI	GRCGYC	1 cut(s)	969
BstAFI	CTTAAG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	1259
BstAUI	TGTACA	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	3 cut(s)	536, 1082, 1086
BstDEI	CTNAG	3 cut(s)	396, 539, 1107
BstDSI	CCRYGG	1 cut(s)	769
BstF5I	GGATG	3 cut(s)	520, 631, 1294
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	8 cut(s)	114, 229, 260, 649, 672, 838, 894, 1126
BstMAI	GTCTC	1 cut(s)	598
BstMBI	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 401, 1117, 1259, 1265
BstNI	CCWGG	2 cut(s)	711, 720
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	709, 718
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	679
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	193, 1007, 1246
BstX2I	RGATCY	2 cut(s)	257, 646
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	2 cut(s)	257, 646
BsuRI	GGCC	2 cut(s)	404, 580
BtgI	CCRYGG	1 cut(s)	769
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	520, 631, 1294
BtsIMutI	CAGTG	2 cut(s)	679, 1309
BtuMI	TCGCGA	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	536, 1082, 1086
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	894
CfoI	GCGC	1 cut(s)	1120
Cfr13I	GGNCC	1 cut(s)	579
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	3 cut(s)	154, 472, 912
CviAII	CATG	5 cut(s)	282, 406, 535, 761, 895
CviQI	GTAC	3 cut(s)	154, 472, 912
DdeI	CTNAG	3 cut(s)	396, 539, 1107
DpnI	GATC	8 cut(s)	113, 228, 259, 648, 671, 837, 893, 1125
DpnII	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
Eam1104I	CTCTTC	1 cut(s)	848
EarI	CTCTTC	1 cut(s)	848
Eco57I	CTGAAG	2 cut(s)	1146, 1254
EcoO109I	RGGNCCY	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	709, 718
EcoT22I	ATGCAT	1 cut(s)	187
FaeI	CATG	5 cut(s)	285, 409, 538, 764, 898
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	5 cut(s)	281, 405, 534, 760, 894
FauNDI	CATATG	1 cut(s)	99
FbaI	TGATCA	4 cut(s)	111, 226, 891, 1123
Fnu4HI	GCNGC	3 cut(s)	207, 996, 1260
FokI	GGATG	3 cut(s)	507, 618, 1301
Fsp4HI	GCNGC	3 cut(s)	207, 996, 1260
FspBI	CTAG	3 cut(s)	725, 1085, 1101
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	3 cut(s)	207, 996, 1260
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	2 cut(s)	66, 1254
HaeIII	GGCC	2 cut(s)	404, 580
HapII	CCGG	1 cut(s)	550
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	1 cut(s)	1120
Hin1I	GRCGYC	1 cut(s)	969
Hin1II	CATG	5 cut(s)	285, 409, 538, 764, 898
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HinfI	GANTC	6 cut(s)	94, 460, 546, 553, 1006, 1061
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	2 cut(s)	1001, 1040
Hpy166II	GTNNAC	2 cut(s)	154, 677
Hpy188I	TCNGA	9 cut(s)	93, 116, 169, 459, 465, 598, 1005, 1045, 1216
Hpy188III	TCNNGA	9 cut(s)	189, 496, 550, 624, 667, 839, 895, 1101, 1233
Hpy8I	GTNNAC	2 cut(s)	154, 677
Hpy99I	CGWCG	1 cut(s)	956
HpyAV	CCTTC	5 cut(s)	196, 271, 374, 522, 876
HpyCH4III	ACNGT	4 cut(s)	592, 956, 1174, 1304
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	5 cut(s)	185, 209, 534, 677, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 401, 1117, 1259, 1265
HpyF3I	CTNAG	3 cut(s)	396, 539, 1107
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	969
Hsp92II	CATG	5 cut(s)	285, 409, 538, 764, 898
HspAI	GCGC	1 cut(s)	1118
Kpn2I	TCCGGA	1 cut(s)	549
Ksp22I	TGATCA	4 cut(s)	111, 226, 891, 1123
Kzo9I	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
LmnI	GCTCC	2 cut(s)	715, 1235
Lsp1109I	GCAGC	3 cut(s)	193, 1007, 1246
LweI	GCATC	5 cut(s)	172, 194, 640, 982, 1255
MaeI	CTAG	3 cut(s)	725, 1085, 1101
MaeII	ACGT	1 cut(s)	474
MalI	GATC	8 cut(s)	113, 228, 259, 648, 671, 837, 893, 1125
MboI	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
MboII	GAAGA	9 cut(s)	116, 446, 671, 694, 865, 927, 1034, 1188, 1304
MflI	RGATCY	2 cut(s)	257, 646
MhlI	GDGCHC	2 cut(s)	277, 679
MluCI	AATT	5 cut(s)	24, 609, 860, 931, 1096
MlyI	GAGTC	2 cut(s)	469, 1070
MmeI	TCCRAC	1 cut(s)	271
Mph1103I	ATGCAT	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	549
MseI	TTAA	4 cut(s)	287, 378, 791, 824
MspA1I	CMGCKG	2 cut(s)	44, 395
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	711, 720
MvaI	CCWGG	2 cut(s)	711, 720
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	5 cut(s)	335, 401, 1117, 1259, 1265
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
NheI	GCTAGC	1 cut(s)	1084
NlaIII	CATG	5 cut(s)	285, 409, 538, 764, 898
NlaIV	GGNNCC	2 cut(s)	259, 717
NruI	TCGCGA	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	538
PaeI	GCATGC	1 cut(s)	538
PagI	TCATGA	1 cut(s)	894
PfeI	GAWTC	4 cut(s)	94, 546, 553, 1006
PkrI	GCNGC	3 cut(s)	208, 997, 1261
PleI	GAGTC	2 cut(s)	468, 1069
PpsI	GAGTC	2 cut(s)	468, 1069
Ppu21I	YACGTR	1 cut(s)	475
PsiI	TTATAA	2 cut(s)	147, 906
Psp6I	CCWGG	2 cut(s)	709, 718
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	2 cut(s)	709, 718
PspN4I	GGNNCC	2 cut(s)	259, 717
PspPI	GGNCC	1 cut(s)	579
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	257, 646
PvuII	CAGCTG	2 cut(s)	44, 395
RruI	TCGCGA	1 cut(s)	190
RsaI	GTAC	3 cut(s)	155, 473, 913
RsaNI	GTAC	3 cut(s)	154, 472, 912
SaqAI	TTAA	4 cut(s)	287, 378, 791, 824
SatI	GCNGC	3 cut(s)	207, 996, 1260
Sau3AI	GATC	8 cut(s)	111, 226, 257, 646, 669, 835, 891, 1123
Sau96I	GGNCC	1 cut(s)	579
SchI	GAGTC	2 cut(s)	469, 1070
ScrFI	CCNGG	2 cut(s)	711, 720
SduI	GDGCHC	2 cut(s)	277, 679
SfaNI	GCATC	5 cut(s)	172, 194, 640, 982, 1255
SfcI	CTRYAG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	377, 496
SmoI	CTYRAG	2 cut(s)	377, 496
SphI	GCATGC	1 cut(s)	538
Sse9I	AATT	5 cut(s)	24, 609, 860, 931, 1096
SsiI	CCGC	1 cut(s)	987
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	3 cut(s)	725, 1085, 1101
StyD4I	CCNGG	2 cut(s)	709, 718
TaaI	ACNGT	4 cut(s)	592, 956, 1174, 1304
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	526, 840
TasI	AATT	5 cut(s)	24, 609, 860, 931, 1096
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	4 cut(s)	94, 546, 553, 1006
Tru1I	TTAA	4 cut(s)	287, 378, 791, 824
Tru9I	TTAA	4 cut(s)	287, 378, 791, 824
TscAI	CASTG	2 cut(s)	679, 1309
TseI	GCWGC	3 cut(s)	206, 995, 1259
TspDTI	ATGAA	4 cut(s)	270, 308, 777, 1305
TspGWI	ACGGA	2 cut(s)	694, 786
TspRI	CASTG	2 cut(s)	679, 1309
Vha464I	CTTAAG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	675
XapI	RAATTY	1 cut(s)	609
XbaI	TCTAGA	1 cut(s)	1100
XceI	RCATGY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	663
XspI	CTAG	3 cut(s)	725, 1085, 1101
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.