Rorug02G0135600

Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004214
Physical Location & Seq
Reverse (-)
11717363 .. 11717992
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0135600.1

Sequence Viewer

Length: 630 bp
ATGGAACCACATACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGTTTTGTAGGCGGAGCAGTACCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTACAACAAGGGAGTTAGGTCCCCAAATGCAGAGCAAGTTCAGAGGATCTGTCTCCAGCTGAAACGGTACGGAAAGATCGAGGGCAAGAACGTCTTTTACTGGTTTGCGAACTACAAGGCTCGGGAGAAGCAGAGGAAGAGGTCCACTTTGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATTTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAAATGGGGAGCTATGGTGGTTATGGATCCATGAGCATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCACGGTGAAGACATTTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCAAGGTGGTGGCTCTCACACTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAATAAGTTTTCAGAGCCGCTGA

Protein Analysis

209

Amino Acids

22.9

Weight (kDa)

9.26

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 3 cut(s) 82, 546, 625
AclWI GGATC 5 cut(s) 194, 363, 382, 447, 460
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 3 cut(s) 91, 209, 337
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 473
AjnI CCWGG 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 6 cut(s) 136, 199, 404, 438, 580, 605
AluI AGCT 6 cut(s) 136, 199, 404, 438, 580, 605
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 5 cut(s) 194, 363, 382, 447, 460
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 159, 282
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 159, 282
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 582
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 2 cut(s) 510, 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 530
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 51, 625
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 52, 626
Bme1390I CCNGG 2 cut(s) 55, 94
Bme18I GGWCC 2 cut(s) 159, 282
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 159, 282
BmiI GGNNCC 4 cut(s) 6, 161, 337, 454
BmrFI CCNGG 2 cut(s) 55, 94
BpiI GAAGAC 2 cut(s) 510, 530
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 113, 596
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 245
Bse21I CCTNAGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 298
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 342, 595
BseNI ACTGG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 306, 582
Bsp143I GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 3 cut(s) 82, 546, 625
BspCNI CTCAG 2 cut(s) 343, 594
BspLI GGNNCC 4 cut(s) 6, 161, 337, 454
BspPI GGATC 5 cut(s) 194, 363, 382, 447, 460
BspT107I GGYRCC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 207, 500
Bst6I CTCTTC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 351, 581
BstF5I GGATG 2 cut(s) 37, 298
BstKTI GATC 7 cut(s) 115, 189, 219, 317, 358, 377, 455
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
BstMWI GCNNNNNNNGC 2 cut(s) 401, 591
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 53, 92
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 510, 530
BstX2I RGATCY 3 cut(s) 186, 374, 452
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 3 cut(s) 186, 374, 452
Bsu36I CCTNAGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 37, 298
Cfr13I GGNCC 2 cut(s) 159, 282
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 208, 336
CviAII CATG 7 cut(s) 70, 299, 307, 457, 463, 493, 520
CviQI GTAC 3 cut(s) 90, 208, 336
DdeI CTNAG 2 cut(s) 351, 581
DpnI GATC 7 cut(s) 114, 188, 218, 316, 357, 376, 454
DpnII GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 159, 282
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 582
FaeI CATG 7 cut(s) 73, 302, 310, 460, 466, 496, 523
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 145
FatI CATG 7 cut(s) 69, 298, 306, 456, 462, 492, 519
Fnu4HI GCNGC 2 cut(s) 51, 625
FokI GGATG 2 cut(s) 44, 305
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 2 cut(s) 51, 625
GluI GCNGC 2 cut(s) 51, 625
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 1 cut(s) 54
Hin1II CATG 7 cut(s) 73, 302, 310, 460, 466, 496, 523
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 99, 285
Hpy188I TCNGA 5 cut(s) 117, 183, 374, 535, 621
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 99, 285
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 2 cut(s) 207, 500
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 170, 310, 383, 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 591
HpyF3I CTNAG 2 cut(s) 351, 581
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 7 cut(s) 73, 302, 310, 460, 466, 496, 523
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
LmnI GCTCC 3 cut(s) 84, 133, 435
Lsp1109I GCAGC 1 cut(s) 62
MabI ACCWGGT 1 cut(s) 92
MaeII ACGT 1 cut(s) 231
MalI GATC 7 cut(s) 114, 188, 218, 316, 357, 376, 454
MboI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
MboII GAAGA 5 cut(s) 289, 369, 390, 515, 535
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 186, 374, 452
MhlI GDGCHC 2 cut(s) 306, 582
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 366, 420
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 3 cut(s) 199, 404, 627
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 55, 94
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 401, 591
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
NlaIII CATG 7 cut(s) 73, 302, 310, 460, 466, 496, 523
NlaIV GGNNCC 4 cut(s) 6, 161, 337, 454
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 2 cut(s) 52, 626
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 159
PscI ACATGT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 4 cut(s) 6, 161, 337, 454
PspPI GGNCC 2 cut(s) 159, 282
PspPPI RGGWCCY 1 cut(s) 159
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
PsuI RGATCY 3 cut(s) 186, 374, 452
PvuII CAGCTG 2 cut(s) 199, 404
RsaI GTAC 3 cut(s) 91, 209, 337
RsaNI GTAC 3 cut(s) 90, 208, 336
RseI CAYNNNNRTG 1 cut(s) 461
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 366, 420
SatI GCNGC 2 cut(s) 51, 625
Sau3AI GATC 7 cut(s) 112, 186, 216, 314, 355, 374, 452
Sau96I GGNCC 2 cut(s) 159, 282
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 55, 94
SduI GDGCHC 2 cut(s) 306, 582
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 2 cut(s) 159, 282
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 2 cut(s) 128, 575
SmoI CTYRAG 2 cut(s) 128, 575
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 82, 546, 625
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 53, 92
TaaI ACNGT 2 cut(s) 207, 500
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 366, 420
Tru9I TTAA 2 cut(s) 366, 420
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 287, 536
TspGWI ACGGA 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 159, 282
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.