Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008267

Physical Location & Seq

Genomic Coordinates Reverse (-)

5865143 .. 5866661

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1009900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCTGTGCCAATGGCTATAGCTTTTTCTGGCCAACTACTTCTGGGGCAACCTGTAATGGTGAAACCTTCGGAGGCTGAAAAGAATCTTGTTCAGTCCAACACAACGAGTGGGGCTGCAGGTGTTGTAGGGCCATATGGTGCGGTTGATAGGAAACTGTATGTGGGGAACTTGCATTTTAACATGACTGAGACTCACCTTAGAGAGATTTTTGAACCGTTTGGACCAGTGGAGCTTGTGCAACTTCCCCTTGATCTTGAGACAGGACAGTGCAAGGGTTTTGGCTTTGTTCAATTTGCTCATCTAGAACATGCAAGGGCTGCTCAAAGTTTGAATGGAAAGTTGGAGATTGCTGGTCGAACTATCAAGGTTTCATCTGTTACAGATCATGTTGGATCTCAAGATGCTGGAGCAAAATCTGCAGACTTTGATGATGATGATGGGGGTGGTTTGGTGAGTTTCAACATTTTCATTATGTTGATGACTATTAGTAAGTTCACGAATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0015630 GO:0016070 GO:0016604 GO:0016607 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

170

Amino Acids

18.06

Weight (kDa)

5.25

Isoelectric Point (pI)

24.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	53 - 123	5.8e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09880
fragaria_vesca	FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920
malus_domestica	MD01G1009900.v1.1 MD15G1339600.v1.1
prunus_persica	Prupe.6G161000_v2.0.a1
pyrus_communis	pycom01g03620 pycom15g29960
rosa_chinensis	RchiOBHm_Chr2g0119921
rosa_laevigata	RLG00000018502
rosa_multiflora	Rmu_sc0001501.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123990
rosa_rugosa	Rorug02G0225300 Rorug02G0225400
rosa_samantha	Rh2AG282500 Rh2BG293900 Rh2DG307700
rosa_wichuraiana	Rw2G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	110
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	215, 293, 334, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	2 cut(s)	23, 235
AluI	AGCT	2 cut(s)	23, 235
Alw26I	GTCTC	2 cut(s)	185, 254
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	2 cut(s)	31, 131
ApeKI	GCWGC	2 cut(s)	116, 320
AspS9I	GGNCC	2 cut(s)	131, 224
AsuHPI	GGTGA	3 cut(s)	73, 188, 466
AvaII	GGWCC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	103, 307
BccI	CCATC	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	185, 254
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	3 cut(s)	18, 117, 420
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	117, 321
BlsI	GCNGC	2 cut(s)	118, 322
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	131, 224
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	278, 384
Bse1I	ACTGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	103, 307
BshFI	GGCC	2 cut(s)	33, 133
BsmAI	GTCTC	2 cut(s)	185, 254
BsnI	GGCC	2 cut(s)	33, 133
Bsp143I	GATC	3 cut(s)	253, 385, 395
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	2 cut(s)	33, 133
BspCNI	CTCAG	1 cut(s)	181
BspMAI	CTGCAG	2 cut(s)	121, 424
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	3 cut(s)	253, 385, 395
Bst4CI	ACNGT	3 cut(s)	159, 219, 270
BstAPI	GCANNNNNTGC	2 cut(s)	320, 419
BstDEI	CTNAG	2 cut(s)	189, 200
BstKTI	GATC	3 cut(s)	256, 388, 398
BstMAI	GTCTC	2 cut(s)	185, 254
BstMBI	GATC	3 cut(s)	253, 385, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 419
BstNSI	RCATGY	1 cut(s)	314
BstSFI	CTRYAG	3 cut(s)	18, 117, 420
BstV1I	GCAGC	2 cut(s)	103, 307
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	33, 133
BtsIMutI	CAGTG	2 cut(s)	234, 275
BveI	ACCTGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	131, 224
CviAII	CATG	3 cut(s)	184, 311, 389
CviJI	RGCY	9 cut(s)	17, 23, 33, 77, 116, 133, 235, 285, 320
CviKI_1	RGCY	9 cut(s)	17, 23, 33, 77, 116, 133, 235, 285, 320
DdeI	CTNAG	2 cut(s)	189, 200
DpnI	GATC	3 cut(s)	255, 387, 397
DpnII	GATC	3 cut(s)	253, 385, 395
EaeI	YGGCCR	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	224
FaeI	CATG	3 cut(s)	187, 314, 392
FaiI	YATR	8 cut(s)	20, 136, 138, 162, 185, 312, 390, 476
FatI	CATG	3 cut(s)	183, 310, 388
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	117, 321
Fsp4HI	GCNGC	2 cut(s)	117, 321
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	117, 321
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	33, 133
Hin1II	CATG	3 cut(s)	187, 314, 392
HinfI	GANTC	2 cut(s)	85, 193
HphI	GGTGA	3 cut(s)	73, 188, 466
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	4 cut(s)	257, 305, 401, 499
Hpy8I	GTNNAC	1 cut(s)	498
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	3 cut(s)	159, 219, 270
HpyCH4V	TGCA	6 cut(s)	119, 175, 241, 273, 314, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 419
HpyF3I	CTNAG	2 cut(s)	189, 200
Hsp92II	CATG	3 cut(s)	187, 314, 392
Kzo9I	GATC	3 cut(s)	253, 385, 395
LmnI	GCTCC	2 cut(s)	232, 410
LpnPI	CCDG	8 cut(s)	15, 29, 66, 105, 240, 249, 339, 393
Lsp1109I	GCAGC	2 cut(s)	103, 307
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	255, 387, 397
MboI	GATC	3 cut(s)	253, 385, 395
MflI	RGATCY	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	3 cut(s)	123, 324, 373
MnlI	CCTC	1 cut(s)	67
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	2 cut(s)	180, 508
Msp20I	TGGCCA	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	320, 419
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	3 cut(s)	253, 385, 395
NlaIII	CATG	3 cut(s)	187, 314, 392
NspI	RCATGY	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	118, 322
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	131, 224
PstI	CTGCAG	2 cut(s)	121, 424
PsuI	RGATCY	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	180, 508
SatI	GCNGC	2 cut(s)	117, 321
Sau3AI	GATC	3 cut(s)	253, 385, 395
Sau96I	GGNCC	2 cut(s)	131, 224
SchI	GAGTC	1 cut(s)	187
SetI	ASST	7 cut(s)	25, 55, 70, 124, 201, 237, 372
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	3 cut(s)	18, 117, 420
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	257, 399
SmoI	CTYRAG	2 cut(s)	257, 399
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	305
TaaI	ACNGT	3 cut(s)	159, 219, 270
TaqI	TCGA	1 cut(s)	358
TasI	AATT	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	180, 508
Tru9I	TTAA	2 cut(s)	180, 508
TscAI	CASTG	2 cut(s)	234, 275
TseI	GCWGC	2 cut(s)	116, 320
TspDTI	ATGAA	2 cut(s)	363, 460
TspRI	CASTG	2 cut(s)	234, 275
VpaK11BI	GGWCC	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	304
XceI	RCATGY	1 cut(s)	314
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.