Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008267

Physical Location & Seq

Genomic Coordinates Forward (+)

58025315 .. 58039520

Gene Structure 14206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGGACTTCGACGAGTACGATTACCTGGAGAAGACTGTGCAGGAGAACGACGACCGTGACTCGAAGAAGAAGGCGAAGAAGGAAGCCACCGAGAAGAGCTACAGGAAGAGAGAGGTAGACGACGACGTTTCGGCGGACGAGGATAGGAAGAGCAGCAAGAGGTCCAGAGGCGGCGAGCACGAGAATGGCCGCGATAAGGAAAAGGATAGGGATCGGCACCACCGGAGCAGCGGCGGTGGTAGAGAGAGGGACAGAGACGGCGAGAGGGACCGCGATCGTGATCGCGGCGGCGAGCGAGAGAGGGAGAGAGACAGGGAGAGGAGCAGTAGGGAGAAGGAGAAGGAGAAGGAGAGAGAGAGGAGGGATAGGGATAAGGAGAAGGAGAAGGAGAGAGAGAAAGAGAAGGAGAAGGAAAGAGAGAGGAGGGAGAGGAGAGAGAGGGATGATAGAGAGAGAAGAGAGAAGGATGAGAAGGAGAGGTCTCGGAGGAGTGTGAGTCGGTCGGATCGGGAAGAGAAGGAGAGGTCCCGGAGGAGTGTGAGCCGGTCCGATAGGGAAGAGAAGGAGAGGTCTCGGAGGAGTAGGAGCCACACTGATCGTGATAGGGAGAGGGAAGTTAGGGAAAAGGAACGAGAATTCGAGATGAATGAGAGCAGGAGGTTTAAAGACAAAAAAGAAATGGTGGAGCCTGAAGCTGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCACTGAAGGCGACTGAGCGAGATGTTTATGAATTCTTCTCAAAGGCGGGCAAGGTGAGGGATGTACGACTGATCATGGACAGGAATTCTAGACGCTCGAAAGGTGTTGGCAATGCGGTAATGATGAGGGATGGTGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGCACTCAAGTCATCAGATTCATCAAAAGAAATTCAGCTTGAGCTCTCTGCCCTTGAGTTTTTGTTTCCATACGTCTCTTTGATATATGCTTTGTATATTGAATTTTATGATGCAATGCATGTGCCGATGGCTATAGCTCTCTCTGGTCAGCTACTTCTTGGACAACCTGTAATGGTGAAGCCTTCAGAGGCAGAAAAGAATCTTGTTCAATCTACTGCTACTGGTGGTACCACAGGCGTAGTAGGACCATATGGTGCAGTTGACAGGAAACTTTATGTAGGGAACTTACATTTTAACATGACTGAGACTCATCTTAGAGAGATTTTTGAACCATTTGGTCCAGTGGAGCTTGTGCAACTTCCCCTTGATATTGAGACATCACAGTGCAAGGGCTTTGGCTTTGTTCAATTTGCTCATCTGGAACATGCAAAGGCAGCTCAAAGTCTGAATGGGAAGTTGGACATTGCTGGTCGAACTATCAAGGTTTCATCCGTTACAGATCATGTTGGCTCACAAGAGACTGGTGCAAAATCAGCAGATTTTGATGATGATGATGGGGGTGGTTTGTCTTTAAATGCTCAATCTAGAGCATTGCTAATGCAAAAGCTGGACCGCACAGGAACTGCCACAAGGAACATGAGTGATAGAGGAGAAGCTCTGATAGATGAAAACAGTGGGGTTACGGATGAAAACAGTGGGCGTTCTCTCGGAGTACCTGGGCTAAATGGGTCAGCACCTAATCAACGAGCTGTTAATTTGCCGATGAATGGTCAAGCCACCCTTTCTGCACCATTTCTTCCAGCAAAAGTGCCTGCAGTAGCAGAACCTATTGGAAACCCCAGTGAATGTCTATTATTGAAGGATATGTTTGATCCAGCCACGGAGACGGAGCCAGATTTTGATGTAGACATAAAAGACGACGTTGAAGATGAATGTTCAAAATATGGTCGCGTGAAGCACATTTATGTGGAGAAAAACAGTGCTGGTTTTGTGTATTTGCGGTTTGAAACTGTGGAAGCGGCAGCTGCAGCTCAACGTGCAATGCATCTGAGATGGTTTGCAGGCAGGCAGATTTCAGCCCTTTTCATGCAACCTCAAGTTTACGAGGCCAATGCTAATTCCCTCAAGCTAAGCAAGTTGGCACGACCCGACAAGATTAGGGACGCCTTGACTGGGAACCTCGAGATGGATAGGTACCAGAGGGTGGAGAAGCCCAAGGCGGAGGCCACGCCTATAAACGAGAATGAAATTCGCATCACCGCTCAAGGTAGAATGAGGAACTATATTACTTACGCCACCACTCTCCTTCAGGACAAAGGGTCTAGTGAAATTGTCCTCAAGGCAATGGGCAGAGCTATCAATAAAACTGTGATGATTGCTGAACTGATCAAGGCTTTCTGCTTCCAGAGAAGGATTGTTGGCCTCCATCAGAATACTTCTATTGGATCAACTGATATAACTGACGTGTGGGAGCCCCTGGAAGAAGGCCTGCTTCCTCTAGAGACTACTCGGCATGTTTCAATGATCACGATTACTTTGTCAAAGACAGAGCTGAAGACAACCTCTACAGGCTACCAACCCCCTATTCCGGCTGATCAAGTGAAACCATTGAATGATTTTGAGGATGATGGAGAGGGTTCACCTAGATTCCGAGGCAGGGGACGTGGTGGCCGAGGAAGAAGCAGGGGTAGAGGGAGCTACAATGGAGTTGTTGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGCTATGGTGGCAGAGGTAGGGGCCGTGCGAGGGGTGGTTCTTTTAGGGGTCGAGGACGAGGTTATGGTCAGCAAGGTGGATACTATGATTATGCTGAAGGTGCACCTATCCAAGGTCGCGGGCTCACAGGGCGTGGCCGAGGAAGGGGAAGGGGCCGTGGGCGTGGTCGTAGTACTCGACTGGATGGCCAAGCACCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0015630 GO:0016070 GO:0016604 GO:0016607 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

954

Amino Acids

107.97

Weight (kDa)

8.86

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	395 - 465	9.5e-19	RNA recognition motif
RBM39linker	PF15519	485 - 604	9e-20	linker between RRM2 and RRM3 domains in RBM39 protein
RRM_1	PF00076	610 - 662	7.2e-07	RNA recognition motif
Alba	PF01918	719 - 788	7.4e-14	Alba

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09880
fragaria_vesca	FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920
malus_domestica	MD01G1009900.v1.1 MD15G1339600.v1.1
prunus_persica	Prupe.6G161000_v2.0.a1
pyrus_communis	pycom01g03620 pycom15g29960
rosa_chinensis	RchiOBHm_Chr2g0119921
rosa_laevigata	RLG00000018502
rosa_multiflora	Rmu_sc0001501.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123990
rosa_rugosa	Rorug02G0225300 Rorug02G0225400
rosa_samantha	Rh2AG282500 Rh2BG293900 Rh2DG307700
rosa_wichuraiana	Rw2G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2631
Acc16I	TGCGCA	1 cut(s)	913
Acc65I	GGTACC	2 cut(s)	1139, 2106
AccB1I	GGYRCC	3 cut(s)	216, 1139, 2106
AccB7I	CCANNNNNTGG	1 cut(s)	2116
AccBSI	CCGCTC	1 cut(s)	2174
AccI	GTMKAC	2 cut(s)	117, 1818
AccII	CGCG	5 cut(s)	192, 273, 285, 1863, 2778
AclWI	GGATC	6 cut(s)	219, 513, 692, 717, 1778, 2365
AcoI	YGGCCR	4 cut(s)	187, 2581, 2794, 2845
AcsI	RAATTY	6 cut(s)	635, 770, 823, 942, 1013, 2160
AcuI	CTGAAG	6 cut(s)	711, 764, 1080, 2204, 2486, 2775
AcyI	GRCGYC	1 cut(s)	2076
AfaI	GTAC	6 cut(s)	17, 804, 1141, 1626, 2108, 2833
AflIII	ACRYGT	1 cut(s)	2376
AhdI	GACNNNNNGTC	1 cut(s)	2230
AjiI	CACGTC	2 cut(s)	2377, 2576
AjnI	CCWGG	3 cut(s)	24, 1627, 2388
AjuI	GAANNNNNNNTTGG	4 cut(s)	1352, 1384, 2481, 2513
Alw21I	GWGCWC	3 cut(s)	180, 957, 2764
Alw44I	GTGCAC	1 cut(s)	2760
AlwI	GGATC	6 cut(s)	219, 513, 692, 717, 1778, 2365
AlwNI	CAGNNNCTG	1 cut(s)	1535
Ama87I	CYCGRG	1 cut(s)	2093
ApaLI	GTGCAC	1 cut(s)	2760
ApeKI	GCWGC	8 cut(s)	153, 228, 909, 1346, 1934, 1937, 1940, 2858
ApoI	RAATTY	6 cut(s)	635, 770, 823, 942, 1013, 2160
Asp718I	GGTACC	2 cut(s)	1139, 2106
AspLEI	GCGC	1 cut(s)	914
AspS9I	GGNCC	9 cut(s)	162, 268, 525, 546, 1157, 1250, 1522, 2680, 2812
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	4 cut(s)	805, 1099, 2161, 2544
AvaI	CYCGRG	1 cut(s)	2093
AvaII	GGWCC	7 cut(s)	162, 268, 525, 546, 1157, 1250, 1522
BaeGI	GKGCMC	1 cut(s)	2764
BalI	TGGCCA	1 cut(s)	2847
BanI	GGYRCC	3 cut(s)	216, 1139, 2106
BanII	GRGCYC	3 cut(s)	957, 2388, 2784
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	38, 2474
Bbv12I	GWGCWC	3 cut(s)	180, 957, 2764
BbvI	GCAGC	8 cut(s)	165, 240, 896, 1358, 1924, 1946, 1952, 2845
BceAI	ACGGC	3 cut(s)	274, 2667, 2799
BcgI	CGANNNNNNTGC	2 cut(s)	2006, 2040
BciT130I	CCWGG	3 cut(s)	26, 1629, 2390
BciVI	GTATCC	1 cut(s)	2732
BclI	TGATCA	4 cut(s)	810, 2298, 2436, 2506
BcnI	CCSGG	1 cut(s)	529
BfaI	CTAG	5 cut(s)	828, 1497, 2235, 2411, 2556
BfmI	CTRYAG	5 cut(s)	100, 1044, 1725, 1938, 2478
BfuI	GTATCC	1 cut(s)	2732
BlpI	GCTNAGC	1 cut(s)	2042
BmcAI	AGTACT	1 cut(s)	2833
Bme1390I	CCNGG	4 cut(s)	26, 529, 1629, 2390
Bme18I	GGWCC	7 cut(s)	162, 268, 525, 546, 1157, 1250, 1522
BmeRI	GACNNNNNGTC	1 cut(s)	2230
BmeT110I	CYCGRG	1 cut(s)	2093
BmgBI	CACGTC	2 cut(s)	2377, 2576
BmgT120I	GGNCC	9 cut(s)	162, 268, 525, 546, 1157, 1250, 1522, 2680, 2812
BmrFI	CCNGG	4 cut(s)	26, 529, 1629, 2390
BmrI	ACTGGG	2 cut(s)	1746, 2094
BmsI	GCATC	4 cut(s)	726, 1012, 1966, 2175
BmuI	ACTGGG	2 cut(s)	1746, 2094
BpiI	GAAGAC	2 cut(s)	38, 2474
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	2042
BpuEI	CTTGAG	7 cut(s)	902, 971, 986, 1992, 2021, 2160, 2234
BpuMI	CCSGG	1 cut(s)	529
BsaBI	GATNNNNATC	2 cut(s)	210, 279
BsaHI	GRCGYC	1 cut(s)	2076
BsaI	GGTCTC	2 cut(s)	486, 576
BsaJI	CCNNGG	9 cut(s)	1628, 1791, 2127, 2388, 2563, 2584, 2770, 2797, 2815
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bse118I	RCCGGY	1 cut(s)	543
Bse1I	ACTGG	6 cut(s)	1138, 1253, 1438, 1752, 2089, 2844
Bse3DI	GCAATG	6 cut(s)	856, 1032, 1374, 1502, 1959, 2262
Bse8I	GATNNNNATC	2 cut(s)	210, 279
BseBI	CCWGG	3 cut(s)	26, 1629, 2390
BseDI	CCNNGG	9 cut(s)	1628, 1791, 2127, 2388, 2563, 2584, 2770, 2797, 2815
BseGI	GGATG	9 cut(s)	448, 472, 805, 874, 1400, 1603, 2542, 2653, 2848
BseJI	GATNNNNATC	2 cut(s)	210, 279
BseMI	GCAATG	6 cut(s)	856, 1032, 1374, 1502, 1959, 2262
BseMII	CTCAG	3 cut(s)	744, 1206, 1952
BseNI	ACTGG	6 cut(s)	1138, 1253, 1438, 1752, 2089, 2844
BseRI	GAGGAG	8 cut(s)	334, 373, 436, 445, 502, 547, 592, 1575
BseSI	GKGCMC	1 cut(s)	2764
BseXI	GCAGC	8 cut(s)	165, 240, 896, 1358, 1924, 1946, 1952, 2845
BsgI	GTGCAG	3 cut(s)	59, 1188, 1683
Bsh1236I	CGCG	5 cut(s)	192, 273, 285, 1863, 2778
Bsh1285I	CGRYCG	3 cut(s)	55, 277, 503
BshNI	GGYRCC	3 cut(s)	216, 1139, 2106
BsiEI	CGRYCG	3 cut(s)	55, 277, 503
BsiHKAI	GWGCWC	3 cut(s)	180, 957, 2764
BsiHKCI	CYCGRG	1 cut(s)	2093
BsiSI	CCGG	4 cut(s)	223, 529, 544, 2501
BslFI	GGGAC	5 cut(s)	263, 281, 511, 2087, 2586
BsmBI	CGTCTC	3 cut(s)	249, 991, 1790
BsmFI	GGGAC	5 cut(s)	263, 281, 511, 2087, 2586
Bso31I	GGTCTC	2 cut(s)	486, 576
BsoBI	CYCGRG	1 cut(s)	2093
Bsp1286I	GDGCHC	5 cut(s)	180, 957, 2388, 2764, 2784
Bsp1720I	GCTNAGC	1 cut(s)	2042
BspCNI	CTCAG	3 cut(s)	745, 1207, 1953
BspFNI	CGCG	5 cut(s)	192, 273, 285, 1863, 2778
BspMAI	CTGCAG	2 cut(s)	1729, 1942
BspPI	GGATC	6 cut(s)	219, 513, 692, 717, 1778, 2365
BspQI	GCTCTTC	2 cut(s)	89, 143
BspT107I	GGYRCC	3 cut(s)	216, 1139, 2106
BspTNI	GGTCTC	2 cut(s)	486, 576
BsrBI	CCGCTC	1 cut(s)	2174
BsrDI	GCAATG	6 cut(s)	856, 1032, 1374, 1502, 1959, 2262
BsrFI	RCCGGY	1 cut(s)	543
BsrI	ACTGG	6 cut(s)	1138, 1253, 1438, 1752, 2089, 2844
BssAI	RCCGGY	1 cut(s)	543
BssECI	CCNNGG	9 cut(s)	1628, 1791, 2127, 2388, 2563, 2584, 2770, 2797, 2815
BssNI	GRCGYC	1 cut(s)	2076
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	2 cut(s)	2127, 2770
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	3 cut(s)	26, 1629, 2390
Bst4CI	ACNGT	9 cut(s)	37, 56, 721, 1296, 1586, 1607, 1892, 1924, 2281
Bst6I	CTCTTC	6 cut(s)	89, 101, 143, 451, 507, 552
BstACI	GRCGYC	1 cut(s)	2076
BstAPI	GCANNNNNTGC	1 cut(s)	2858
BstC8I	GCNNGC	8 cut(s)	176, 293, 787, 1725, 1975, 1979, 2402, 2780
BstDEI	CTNAG	5 cut(s)	753, 1215, 1226, 1961, 2042
BstDSI	CCRYGG	2 cut(s)	1791, 2815
BstENI	CCTNNNNNAGG	1 cut(s)	2769
BstF5I	GGATG	9 cut(s)	448, 472, 805, 874, 1400, 1603, 2542, 2653, 2848
BstFNI	CGCG	5 cut(s)	192, 273, 285, 1863, 2778
BstHHI	GCGC	1 cut(s)	914
BstMCI	CGRYCG	3 cut(s)	55, 277, 503
BstMWI	GCNNNNNNNGC	9 cut(s)	1346, 1445, 1937, 1940, 1949, 2667, 2759, 2788, 2858
BstNI	CCWGG	3 cut(s)	26, 1629, 2390
BstNSI	RCATGY	3 cut(s)	1034, 1340, 2429
BstSCI	CCNGG	4 cut(s)	24, 527, 1627, 2388
BstSFI	CTRYAG	5 cut(s)	100, 1044, 1725, 1938, 2478
BstSLI	GKGCMC	1 cut(s)	2764
BstUI	CGCG	5 cut(s)	192, 273, 285, 1863, 2778
BstV1I	GCAGC	8 cut(s)	165, 240, 896, 1358, 1924, 1946, 1952, 2845
BstV2I	GAAGAC	2 cut(s)	38, 2474
BsuI	GTATCC	1 cut(s)	2732
BtgI	CCRYGG	2 cut(s)	1791, 2815
BtrI	CACGTC	2 cut(s)	2377, 2576
BtsCI	GGATG	9 cut(s)	448, 472, 805, 874, 1400, 1603, 2542, 2653, 2848
BtsIMutI	CAGTG	8 cut(s)	591, 740, 1260, 1301, 1591, 1612, 1759, 1897
Cac8I	GCNNGC	8 cut(s)	176, 293, 787, 1725, 1975, 1979, 2402, 2780
CaiI	CAGNNNCTG	1 cut(s)	1535
CfoI	GCGC	1 cut(s)	914
Cfr10I	RCCGGY	1 cut(s)	543
Cfr13I	GGNCC	9 cut(s)	162, 268, 525, 546, 1157, 1250, 1522, 2680, 2812
CpoI	CGGWCCG	1 cut(s)	546
CseI	GACGC	2 cut(s)	840, 2084
Csp6I	GTAC	6 cut(s)	16, 803, 1140, 1625, 2107, 2832
CspI	CGGWCCG	1 cut(s)	546
CviQI	GTAC	6 cut(s)	16, 803, 1140, 1625, 2107, 2832
DdeI	CTNAG	5 cut(s)	753, 1215, 1226, 1961, 2042
DraI	TTTAAA	2 cut(s)	664, 1485
DriI	GACNNNNNGTC	1 cut(s)	2230
EaeI	YGGCCR	4 cut(s)	187, 2581, 2794, 2845
Eam1104I	CTCTTC	6 cut(s)	89, 101, 143, 451, 507, 552
Eam1105I	GACNNNNNGTC	1 cut(s)	2230
EarI	CTCTTC	6 cut(s)	89, 101, 143, 451, 507, 552
EciI	GGCGGA	2 cut(s)	149, 2147
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	2 cut(s)	2127, 2770
Eco147I	AGGCCT	1 cut(s)	2400
Eco24I	GRGCYC	3 cut(s)	957, 2388, 2784
Eco31I	GGTCTC	2 cut(s)	486, 576
Eco47I	GGWCC	7 cut(s)	162, 268, 525, 546, 1157, 1250, 1522
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	6 cut(s)	711, 764, 1080, 2204, 2486, 2775
Eco88I	CYCGRG	1 cut(s)	2093
EcoICRI	GAGCTC	1 cut(s)	955
EcoNI	CCTNNNNNAGG	1 cut(s)	2769
EcoO109I	RGGNCCY	1 cut(s)	525
EcoRI	GAATTC	3 cut(s)	635, 770, 823
EcoRII	CCWGG	3 cut(s)	24, 1627, 2388
EcoT14I	CCWWGG	2 cut(s)	2127, 2770
EcoT22I	ATGCAT	2 cut(s)	1032, 1959
EcoT38I	GRGCYC	3 cut(s)	957, 2388, 2784
ErhI	CCWWGG	2 cut(s)	2127, 2770
Esp3I	CGTCTC	3 cut(s)	249, 991, 1790
FalI	AAGNNNNNCTT	4 cut(s)	1677, 1709, 2388, 2420
FaqI	GGGAC	5 cut(s)	263, 281, 511, 2087, 2586
FauI	CCCGC	2 cut(s)	778, 2771
FauNDI	CATATG	1 cut(s)	1162
FbaI	TGATCA	4 cut(s)	810, 2298, 2436, 2506
FblI	GTMKAC	2 cut(s)	117, 1818
FokI	GGATG	9 cut(s)	455, 479, 812, 881, 1387, 1610, 2549, 2660, 2855
FriOI	GRGCYC	3 cut(s)	957, 2388, 2784
FspBI	CTAG	5 cut(s)	828, 1497, 2235, 2411, 2556
FspI	TGCGCA	1 cut(s)	913
GlaI	GCGC	1 cut(s)	913
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	4 cut(s)	223, 529, 544, 2501
HgaI	GACGC	2 cut(s)	840, 2084
HhaI	GCGC	1 cut(s)	914
Hin1I	GRCGYC	1 cut(s)	2076
Hin6I	GCGC	1 cut(s)	912
HinP1I	GCGC	1 cut(s)	912
HincII	GTYRAC	1 cut(s)	1174
HindII	GTYRAC	1 cut(s)	1174
HinfI	GANTC	6 cut(s)	59, 496, 929, 1111, 1219, 2559
HpaII	CCGG	4 cut(s)	223, 529, 544, 2501
HphI	GGTGA	4 cut(s)	805, 1099, 2161, 2544
Hpy166II	GTNNAC	6 cut(s)	118, 1174, 1819, 2014, 2552, 2762
Hpy8I	GTNNAC	6 cut(s)	118, 1174, 1819, 2014, 2552, 2762
Hpy99I	CGWCG	5 cut(s)	14, 53, 125, 128, 1835
HpyCH4III	ACNGT	9 cut(s)	37, 56, 721, 1296, 1586, 1607, 1892, 1924, 2281
HpyCH4IV	ACGT	6 cut(s)	126, 984, 1833, 1948, 2376, 2575
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1346, 1445, 1937, 1940, 1949, 2667, 2759, 2788, 2858
HpyF3I	CTNAG	5 cut(s)	753, 1215, 1226, 1961, 2042
HpySE526I	ACGT	6 cut(s)	126, 984, 1833, 1948, 2376, 2575
Hsp92I	GRCGYC	1 cut(s)	2076
HspAI	GCGC	1 cut(s)	912
KpnI	GGTACC	2 cut(s)	1143, 2110
Ksp22I	TGATCA	4 cut(s)	810, 2298, 2436, 2506
LguI	GCTCTTC	2 cut(s)	89, 143
LmnI	GCTCC	8 cut(s)	225, 321, 585, 685, 1258, 1801, 2383, 2607
Lsp1109I	GCAGC	8 cut(s)	165, 240, 896, 1358, 1924, 1946, 1952, 2845
LweI	GCATC	4 cut(s)	726, 1012, 1966, 2175
MaeI	CTAG	5 cut(s)	828, 1497, 2235, 2411, 2556
MaeII	ACGT	6 cut(s)	126, 984, 1833, 1948, 2376, 2575
MaeIII	GTNAC	3 cut(s)	56, 1405, 1591
MbiI	CCGCTC	1 cut(s)	2174
MhlI	GDGCHC	5 cut(s)	180, 957, 2388, 2764, 2784
MlsI	TGGCCA	1 cut(s)	2847
MluNI	TGGCCA	1 cut(s)	2847
MlyI	GAGTC	3 cut(s)	53, 505, 1213
MmeI	TCCRAC	2 cut(s)	483, 1350
Mox20I	TGGCCA	1 cut(s)	2847
Mph1103I	ATGCAT	2 cut(s)	1032, 1959
MscI	TGGCCA	1 cut(s)	2847
MseI	TTAA	5 cut(s)	663, 896, 1206, 1484, 1665
MslI	CAYNNNNRTG	4 cut(s)	183, 1294, 1875, 1877
Msp20I	TGGCCA	1 cut(s)	2847
MspA1I	CMGCKG	3 cut(s)	231, 1937, 2858
MspI	CCGG	4 cut(s)	223, 529, 544, 2501
MspR9I	CCNGG	4 cut(s)	26, 529, 1629, 2390
MvaI	CCWGG	3 cut(s)	26, 1629, 2390
MvnI	CGCG	5 cut(s)	192, 273, 285, 1863, 2778
MwoI	GCNNNNNNNGC	9 cut(s)	1346, 1445, 1937, 1940, 1949, 2667, 2759, 2788, 2858
NciI	CCSGG	1 cut(s)	529
NdeI	CATATG	1 cut(s)	1162
NmeAIII	GCCGAG	3 cut(s)	2401, 2609, 2822
NmuCI	GTSAC	1 cut(s)	56
NsbI	TGCGCA	1 cut(s)	913
NsiI	ATGCAT	2 cut(s)	1032, 1959
NspI	RCATGY	3 cut(s)	1034, 1340, 2429
PaeR7I	CTCGAG	1 cut(s)	2093
PceI	AGGCCT	1 cut(s)	2400
PciSI	GCTCTTC	2 cut(s)	89, 143
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 2581, 2833
PfeI	GAWTC	3 cut(s)	929, 1111, 2559
PflMI	CCANNNNNTGG	1 cut(s)	2116
PfoI	TCCNGGA	1 cut(s)	527
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	3 cut(s)	53, 504, 1213
PpsI	GAGTC	3 cut(s)	53, 504, 1213
PpuMI	RGGWCCY	1 cut(s)	525
PsiI	TTATAA	1 cut(s)	2631
Psp124BI	GAGCTC	1 cut(s)	957
Psp5II	RGGWCCY	1 cut(s)	525
Psp6I	CCWGG	3 cut(s)	24, 1627, 2388
PspGI	CCWGG	3 cut(s)	24, 1627, 2388
PspPI	GGNCC	9 cut(s)	162, 268, 525, 546, 1157, 1250, 1522, 2680, 2812
PspPPI	RGGWCCY	1 cut(s)	525
PstI	CTGCAG	2 cut(s)	1729, 1942
PstNI	CAGNNNCTG	1 cut(s)	1535
PvuI	CGATCG	1 cut(s)	277
PvuII	CAGCTG	2 cut(s)	1937, 2858
RsaI	GTAC	6 cut(s)	17, 804, 1141, 1626, 2108, 2833
RsaNI	GTAC	6 cut(s)	16, 803, 1140, 1625, 2107, 2832
RseI	CAYNNNNRTG	4 cut(s)	183, 1294, 1875, 1877
Rsr2I	CGGWCCG	1 cut(s)	546
RsrII	CGGWCCG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	957
SapI	GCTCTTC	2 cut(s)	89, 143
SaqAI	TTAA	5 cut(s)	663, 896, 1206, 1484, 1665
Sau96I	GGNCC	9 cut(s)	162, 268, 525, 546, 1157, 1250, 1522, 2680, 2812
ScaI	AGTACT	1 cut(s)	2833
SchI	GAGTC	3 cut(s)	53, 505, 1213
ScrFI	CCNGG	4 cut(s)	26, 529, 1629, 2390
SduI	GDGCHC	5 cut(s)	180, 957, 2388, 2764, 2784
SfaNI	GCATC	4 cut(s)	726, 1012, 1966, 2175
SfcI	CTRYAG	5 cut(s)	100, 1044, 1725, 1938, 2478
Sfr274I	CTCGAG	1 cut(s)	2093
SinI	GGWCC	7 cut(s)	162, 268, 525, 546, 1157, 1250, 1522
SlaI	CTCGAG	1 cut(s)	2093
SmiMI	CAYNNNNRTG	4 cut(s)	183, 1294, 1875, 1877
SmlI	CTYRAG	8 cut(s)	917, 950, 965, 2007, 2036, 2093, 2175, 2249
SmoI	CTYRAG	8 cut(s)	917, 950, 965, 2007, 2036, 2093, 2175, 2249
SseBI	AGGCCT	1 cut(s)	2400
SspMI	CTAG	5 cut(s)	828, 1497, 2235, 2411, 2556
SstI	GAGCTC	1 cut(s)	957
StuI	AGGCCT	1 cut(s)	2400
StyD4I	CCNGG	4 cut(s)	24, 527, 1627, 2388
StyI	CCWWGG	2 cut(s)	2127, 2770
TaaI	ACNGT	9 cut(s)	37, 56, 721, 1296, 1586, 1607, 1892, 1924, 2281
TaiI	ACGT	6 cut(s)	129, 987, 1836, 1951, 2379, 2578
TaqI	TCGA	8 cut(s)	9, 62, 639, 836, 1384, 2094, 2710, 2836
TaqII	GACCGA	1 cut(s)	489
TatI	WGTACW	1 cut(s)	2831
TauI	GCSGC	6 cut(s)	174, 192, 234, 288, 291, 1934
TfiI	GAWTC	3 cut(s)	929, 1111, 2559
Tru1I	TTAA	5 cut(s)	663, 896, 1206, 1484, 1665
Tru9I	TTAA	5 cut(s)	663, 896, 1206, 1484, 1665
TscAI	CASTG	8 cut(s)	598, 747, 1260, 1301, 1591, 1612, 1759, 1897
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	8 cut(s)	153, 228, 909, 1346, 1934, 1937, 1940, 2858
Tsp45I	GTSAC	1 cut(s)	56
TspGWI	ACGGA	4 cut(s)	1393, 1610, 1808, 1814
TspRI	CASTG	8 cut(s)	598, 747, 1260, 1301, 1591, 1612, 1759, 1897
Van91I	CCANNNNNTGG	1 cut(s)	2116
VneI	GTGCAC	1 cut(s)	2760
VpaK11BI	GGWCC	7 cut(s)	162, 268, 525, 546, 1157, 1250, 1522
XagI	CCTNNNNNAGG	1 cut(s)	2769
XapI	RAATTY	6 cut(s)	635, 770, 823, 942, 1013, 2160
XbaI	TCTAGA	3 cut(s)	827, 1496, 2410
XceI	RCATGY	3 cut(s)	1034, 1340, 2429
XhoI	CTCGAG	1 cut(s)	2093
XmiI	GTMKAC	2 cut(s)	117, 1818
XspI	CTAG	5 cut(s)	828, 1497, 2235, 2411, 2556
ZrmI	AGTACT	1 cut(s)	2833
Zsp2I	ATGCAT	2 cut(s)	1032, 1959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.