Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008267

Physical Location & Seq

Genomic Coordinates Reverse (-)

34322693 .. 34331237

Gene Structure 8545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG282500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGGACTTCGACGAGTACGATTACCTGGAGAAGACCGTGCAGGAGAACGACGACCGTGACTCGAAGAAGAAGGCGAAGAAGGAAGCCACCGAGAAGAGCTACAGGAAGAGAGAGGTAGACGACGACGTTTCGGCCGACGAGGATAGGAAGAGCAGCAAGAGGTCCAGAGGCGGCGAGCACGAGAATGGCCGCGATAAGGAAAGGGATAGGGATCGGCACCACCGGAGCAGCGGCGGTGGTAGAGAGAGGGACAGAGACGGCGAGAGGGACCGCGATCGTGATCGCGGCGGCGAGCGAGAGAGGGAGAGAGACAGGGAGAGGAGCAGTAGGGAGAAGGAGAAGGAGAGAGAGAGGAGGGATAGGGATAAGGAGAAGGAGAAGGAGAGAGAGAAAGAGAAGGAGAAGGAAAGAGAGAGGAGGGAGAGGAGAGAGAGGGATGATAGAGAGAGAAGAGAGAAGGATGAGAAGGAGAGGTCTCGGAGGAGTGTGAGTCGGTCGGATCGGGAAGAGAAGGAGAGGTCCCGGAGGAGTGTGAGCCGGTCTGATAGGGAAGAGAAGGAGAGGTCTCGGAGGAGTAGGAGCCACACTGATCGTGATAGGGAGAGGGAAGTTAGGGAAAAGGAACGAGAATTCGAGATGAATGAGAGCAGGAGGTTTAAAGACAAAAAAGAAATGGTGGAGCCTGAAGCTGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCACTGAAGGCGACCGAGCGAGATGTTTATGAATTCTTCTCAAAGGCGGGCAAGGTGAGGGATGTACGGCTGATCATGGACAGGAATTCTAGACGATCGAAAGGTGTTGGGTATATTGAATTTTATGATGCAATGCATGTGCCGATGGCTATAGCTCTCTCTGGTCAGCTACTTCTTGGACAACCTGTAATGGTGAAACCTTCAGAGGCAGAAAAGAATCTTGTTCAATCTACTGCTACTGGTGGTACCACAGGCGTAGTAGGACCATATGGTGCAGTTGACAGGAAACTTTATGTAGGGAACTTGCATTTTAACATGACTGAGACTCATCTTAGAGAGATTTTTGAACCATTTGGTCCAGTGGAGCTTGTGCAACTTCCCCTTGATATTGAGACATCACAGTGCAAGGGCTTTGGCTTTGTTCAATTTGCTCATCTGGAACATGCAAAGGCAGCTCAAAGTTTGAATGGGAAGTTGGACATTGCTGGTCGAACTATCAAGGTTTCATCCGTTACAGATCATGTTGGCTCACAAGAGACTGGTGCAAAATCAGCAGATTTTGATGATGATGATGGGGGTGGTTTGTCTTTAAATGCTCAATCTAGAGCATTGCTAATGCAAAAGCTGGACCGCACTGGAACTGCCACAAGTATTGCAGGTTCTCTCGGAGTACCTGGGCTAAATGGGTCAGCACCTAATCAACGAGCTGTTAATTTGCCGATGAATGGTCAAGCCACCCTTTCTGCACCATTTCTTCCAGCAAAAGTGCCTGCAGTAGCAGAACCTATTGGAAACCCCAGTGAATGTCTATTATTGAAGGATATGTTTGATCCAGCCACGGAGACGGAGCCAGATTTTGATGTAGACATAAAAGATGACGTCGAAGATGAATGTTCAAAATATGGTCGCGTGAAGCACATTTATGTGGAGAAAAACAGTGCTGGATTTGTGTATTTGCGGTTTGAAACTGTGGAAGCAGCAGCTGCAGCTCAACGTGCAATGCATCTGAGATGGTTTGCAGGCAGGCAGATTTCAGCCCTTTTCATGCAACCTCAAGTTTACGAGGCCAAGTTTGGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0015630 GO:0016070 GO:0016604 GO:0016607 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

604

Amino Acids

69.63

Weight (kDa)

6.71

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	244 - 306	1.7e-10	RNA recognition motif
RRM_1	PF00076	341 - 411	5.2e-19	RNA recognition motif
RBM39linker	PF15519	431 - 530	1.8e-21	linker between RRM2 and RRM3 domains in RBM39 protein
RRM_1	PF00076	536 - 588	4.1e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09880
fragaria_vesca	FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920
malus_domestica	MD01G1009900.v1.1 MD15G1339600.v1.1
prunus_persica	Prupe.6G161000_v2.0.a1
pyrus_communis	pycom01g03620 pycom15g29960
rosa_chinensis	RchiOBHm_Chr2g0119921
rosa_laevigata	RLG00000018502
rosa_multiflora	Rmu_sc0001501.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123990
rosa_rugosa	Rorug02G0225300 Rorug02G0225400
rosa_samantha	Rh2AG282500 Rh2BG293900 Rh2DG307700
rosa_wichuraiana	Rw2G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1614
Acc36I	ACCTGC	1 cut(s)	1379
Acc65I	GGTACC	1 cut(s)	977
AccB1I	GGYRCC	2 cut(s)	216, 977
AccI	GTMKAC	2 cut(s)	117, 1596
AccII	CGCG	4 cut(s)	192, 273, 285, 1641
AclWI	GGATC	5 cut(s)	219, 507, 686, 711, 1556
AcoI	YGGCCR	2 cut(s)	132, 187
AcsI	RAATTY	4 cut(s)	629, 764, 817, 851
AcuI	CTGAAG	3 cut(s)	705, 758, 918
AcyI	GRCGYC	1 cut(s)	1611
AfaI	GTAC	4 cut(s)	17, 798, 979, 1404
AfiI	CCNNNNNNNGG	2 cut(s)	196, 1457
AgsI	TTSAA	8 cut(s)	851, 959, 1079, 1157, 1198, 1549, 1629, 1697
AjnI	CCWGG	2 cut(s)	24, 1405
AjuI	GAANNNNNNNTTGG	2 cut(s)	1190, 1222
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	8 cut(s)	249, 303, 480, 570, 1049, 1118, 1262, 1568
AlwI	GGATC	5 cut(s)	219, 507, 686, 711, 1556
AlwNI	CAGNNNCTG	1 cut(s)	1715
AoxI	GGCC	3 cut(s)	132, 187, 1797
ApeKI	GCWGC	7 cut(s)	153, 228, 1184, 1709, 1712, 1715, 1718
ApoI	RAATTY	4 cut(s)	629, 764, 817, 851
Asp718I	GGTACC	1 cut(s)	977
AspS9I	GGNCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	799, 937
AvaII	GGWCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
BanI	GGYRCC	2 cut(s)	216, 977
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	7 cut(s)	165, 240, 1196, 1702, 1721, 1724, 1730
BccI	CCATC	3 cut(s)	871, 1298, 1737
BceAI	ACGGC	2 cut(s)	274, 815
BciT130I	CCWGG	2 cut(s)	26, 1407
BclI	TGATCA	1 cut(s)	804
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	8 cut(s)	249, 303, 480, 570, 1049, 1118, 1262, 1568
BfaI	CTAG	2 cut(s)	822, 1335
BfmI	CTRYAG	4 cut(s)	100, 882, 1503, 1716
BfuAI	ACCTGC	1 cut(s)	1379
Bme1390I	CCNGG	3 cut(s)	26, 523, 1407
Bme18I	GGWCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
BmgT120I	GGNCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
BmiI	GGNNCC	7 cut(s)	218, 269, 521, 581, 681, 979, 1581
BmrFI	CCNGG	3 cut(s)	26, 523, 1407
BmrI	ACTGGG	1 cut(s)	1524
BmsI	GCATC	3 cut(s)	720, 850, 1744
BmuI	ACTGGG	1 cut(s)	1524
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	1770
BpuMI	CCSGG	1 cut(s)	523
BsaBI	GATNNNNATC	2 cut(s)	210, 279
BsaHI	GRCGYC	1 cut(s)	1611
BsaI	GGTCTC	2 cut(s)	480, 570
BsaJI	CCNNGG	2 cut(s)	1406, 1569
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 1457
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	5 cut(s)	976, 1091, 1276, 1372, 1530
Bse3DI	GCAATG	4 cut(s)	870, 1212, 1340, 1737
Bse8I	GATNNNNATC	2 cut(s)	210, 279
BseBI	CCWGG	2 cut(s)	26, 1407
BseDI	CCNNGG	2 cut(s)	1406, 1569
BseGI	GGATG	4 cut(s)	442, 466, 799, 1238
BseJI	GATNNNNATC	2 cut(s)	210, 279
BseLI	CCNNNNNNNGG	2 cut(s)	196, 1457
BseMI	GCAATG	4 cut(s)	870, 1212, 1340, 1737
BseMII	CTCAG	2 cut(s)	1044, 1730
BseNI	ACTGG	5 cut(s)	976, 1091, 1276, 1372, 1530
BseRI	GAGGAG	7 cut(s)	334, 367, 430, 439, 496, 541, 586
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	7 cut(s)	165, 240, 1196, 1702, 1721, 1724, 1730
BsgI	GTGCAG	3 cut(s)	59, 1026, 1461
Bsh1236I	CGCG	4 cut(s)	192, 273, 285, 1641
Bsh1285I	CGRYCG	6 cut(s)	55, 135, 277, 497, 747, 830
BshFI	GGCC	3 cut(s)	134, 189, 1799
BshNI	GGYRCC	2 cut(s)	216, 977
BsiEI	CGRYCG	6 cut(s)	55, 135, 277, 497, 747, 830
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	223, 523, 538
BslFI	GGGAC	3 cut(s)	263, 281, 505
BslI	CCNNNNNNNGG	2 cut(s)	196, 1457
BsmAI	GTCTC	8 cut(s)	249, 303, 480, 570, 1049, 1118, 1262, 1568
BsmBI	CGTCTC	2 cut(s)	249, 1568
BsmFI	GGGAC	3 cut(s)	263, 281, 505
BsnI	GGCC	3 cut(s)	134, 189, 1799
Bso31I	GGTCTC	2 cut(s)	480, 570
Bsp1286I	GDGCHC	1 cut(s)	180
BspANI	GGCC	3 cut(s)	134, 189, 1799
BspCNI	CTCAG	2 cut(s)	1045, 1731
BspFNI	CGCG	4 cut(s)	192, 273, 285, 1641
BspLI	GGNNCC	7 cut(s)	218, 269, 521, 581, 681, 979, 1581
BspMAI	CTGCAG	2 cut(s)	1507, 1720
BspMI	ACCTGC	1 cut(s)	1379
BspPI	GGATC	5 cut(s)	219, 507, 686, 711, 1556
BspQI	GCTCTTC	2 cut(s)	89, 143
BspT107I	GGYRCC	2 cut(s)	216, 977
BspTNI	GGTCTC	2 cut(s)	480, 570
BsrDI	GCAATG	4 cut(s)	870, 1212, 1340, 1737
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	976, 1091, 1276, 1372, 1530
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	1406, 1569
BssNI	GRCGYC	1 cut(s)	1611
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	26, 1407
Bst4CI	ACNGT	6 cut(s)	37, 56, 715, 1134, 1670, 1702
Bst6I	CTCTTC	6 cut(s)	89, 101, 143, 445, 501, 546
BstACI	GRCGYC	1 cut(s)	1611
BstAPI	GCANNNNNTGC	1 cut(s)	1715
BstC8I	GCNNGC	6 cut(s)	176, 293, 781, 1503, 1753, 1757
BstDEI	CTNAG	3 cut(s)	1053, 1064, 1739
BstDSI	CCRYGG	1 cut(s)	1569
BstF5I	GGATG	4 cut(s)	442, 466, 799, 1238
BstFNI	CGCG	4 cut(s)	192, 273, 285, 1641
BstMAI	GTCTC	8 cut(s)	249, 303, 480, 570, 1049, 1118, 1262, 1568
BstMCI	CGRYCG	6 cut(s)	55, 135, 277, 497, 747, 830
BstMWI	GCNNNNNNNGC	5 cut(s)	1184, 1283, 1715, 1718, 1727
BstNI	CCWGG	2 cut(s)	26, 1407
BstNSI	RCATGY	2 cut(s)	872, 1178
BstSCI	CCNGG	3 cut(s)	24, 521, 1405
BstSFI	CTRYAG	4 cut(s)	100, 882, 1503, 1716
BstUI	CGCG	4 cut(s)	192, 273, 285, 1641
BstV1I	GCAGC	7 cut(s)	165, 240, 1196, 1702, 1721, 1724, 1730
BstV2I	GAAGAC	1 cut(s)	38
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	134, 189, 1799
BtgI	CCRYGG	1 cut(s)	1569
BtsCI	GGATG	4 cut(s)	442, 466, 799, 1238
BtsIMutI	CAGTG	7 cut(s)	585, 734, 1098, 1139, 1365, 1537, 1675
BveI	ACCTGC	1 cut(s)	1379
Cac8I	GCNNGC	6 cut(s)	176, 293, 781, 1503, 1753, 1757
CaiI	CAGNNNCTG	1 cut(s)	1715
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
Csp6I	GTAC	4 cut(s)	16, 797, 978, 1403
CspCI	CAANNNNNGTGG	2 cut(s)	1366, 1401
CviAII	CATG	6 cut(s)	808, 869, 1048, 1175, 1253, 1777
CviQI	GTAC	4 cut(s)	16, 797, 978, 1403
DdeI	CTNAG	3 cut(s)	1053, 1064, 1739
DraI	TTTAAA	2 cut(s)	658, 1323
EaeI	YGGCCR	2 cut(s)	132, 187
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	6 cut(s)	89, 101, 143, 445, 501, 546
EarI	CTCTTC	6 cut(s)	89, 101, 143, 445, 501, 546
EclXI	CGGCCG	1 cut(s)	132
Eco31I	GGTCTC	2 cut(s)	480, 570
Eco47I	GGWCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
Eco52I	CGGCCG	1 cut(s)	132
Eco57I	CTGAAG	3 cut(s)	705, 758, 918
EcoO109I	RGGNCCY	1 cut(s)	519
EcoRI	GAATTC	3 cut(s)	629, 764, 817
EcoRII	CCWGG	2 cut(s)	24, 1405
EcoT22I	ATGCAT	2 cut(s)	870, 1737
Esp3I	CGTCTC	2 cut(s)	249, 1568
FaeI	CATG	6 cut(s)	811, 872, 1051, 1178, 1256, 1780
FalI	AAGNNNNNCTT	2 cut(s)	1455, 1487
FaqI	GGGAC	3 cut(s)	263, 281, 505
FatI	CATG	6 cut(s)	807, 868, 1047, 1174, 1252, 1776
FauI	CCCGC	1 cut(s)	772
FauNDI	CATATG	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	804
FblI	GTMKAC	2 cut(s)	117, 1596
FokI	GGATG	4 cut(s)	449, 473, 806, 1225
FspBI	CTAG	2 cut(s)	822, 1335
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	134, 189, 1799
HapII	CCGG	3 cut(s)	223, 523, 538
Hin1I	GRCGYC	1 cut(s)	1611
Hin1II	CATG	6 cut(s)	811, 872, 1051, 1178, 1256, 1780
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HinfI	GANTC	4 cut(s)	59, 490, 949, 1057
HpaII	CCGG	3 cut(s)	223, 523, 538
HphI	GGTGA	2 cut(s)	799, 937
Hpy166II	GTNNAC	4 cut(s)	118, 1012, 1597, 1792
Hpy188I	TCNGA	8 cut(s)	480, 499, 544, 570, 708, 937, 1400, 1740
Hpy188III	TCNNGA	9 cut(s)	165, 278, 503, 593, 634, 695, 822, 1169, 1335
Hpy8I	GTNNAC	4 cut(s)	118, 1012, 1597, 1792
Hpy99I	CGWCG	6 cut(s)	14, 53, 125, 128, 140, 1616
HpyCH4III	ACNGT	6 cut(s)	37, 56, 715, 1134, 1670, 1702
HpyCH4IV	ACGT	3 cut(s)	126, 1611, 1726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1184, 1283, 1715, 1718, 1727
HpyF3I	CTNAG	3 cut(s)	1053, 1064, 1739
HpySE526I	ACGT	3 cut(s)	126, 1611, 1726
Hsp92I	GRCGYC	1 cut(s)	1611
Hsp92II	CATG	6 cut(s)	811, 872, 1051, 1178, 1256, 1780
KpnI	GGTACC	1 cut(s)	981
Ksp22I	TGATCA	1 cut(s)	804
LguI	GCTCTTC	2 cut(s)	89, 143
LmnI	GCTCC	6 cut(s)	225, 321, 579, 679, 1096, 1579
Lsp1109I	GCAGC	7 cut(s)	165, 240, 1196, 1702, 1721, 1724, 1730
LweI	GCATC	3 cut(s)	720, 850, 1744
MaeI	CTAG	2 cut(s)	822, 1335
MaeII	ACGT	3 cut(s)	126, 1611, 1726
MaeIII	GTNAC	2 cut(s)	56, 1243
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	6 cut(s)	629, 764, 817, 851, 1157, 1444
MlyI	GAGTC	3 cut(s)	53, 499, 1051
MmeI	TCCRAC	2 cut(s)	477, 1188
Mph1103I	ATGCAT	2 cut(s)	870, 1737
MseI	TTAA	4 cut(s)	657, 1044, 1322, 1443
MslI	CAYNNNNRTG	4 cut(s)	183, 1132, 1653, 1655
MspA1I	CMGCKG	2 cut(s)	231, 1715
MspI	CCGG	3 cut(s)	223, 523, 538
MspR9I	CCNGG	3 cut(s)	26, 523, 1407
MvaI	CCWGG	2 cut(s)	26, 1407
MvnI	CGCG	4 cut(s)	192, 273, 285, 1641
MwoI	GCNNNNNNNGC	5 cut(s)	1184, 1283, 1715, 1718, 1727
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	1 cut(s)	1000
NlaIII	CATG	6 cut(s)	811, 872, 1051, 1178, 1256, 1780
NlaIV	GGNNCC	7 cut(s)	218, 269, 521, 581, 681, 979, 1581
NmuCI	GTSAC	1 cut(s)	56
NsiI	ATGCAT	2 cut(s)	870, 1737
NspI	RCATGY	2 cut(s)	872, 1178
PciSI	GCTCTTC	2 cut(s)	89, 143
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 132
PfeI	GAWTC	1 cut(s)	949
PfoI	TCCNGGA	1 cut(s)	521
Ple19I	CGATCG	2 cut(s)	277, 830
PleI	GAGTC	3 cut(s)	53, 498, 1051
PpsI	GAGTC	3 cut(s)	53, 498, 1051
PpuMI	RGGWCCY	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	24, 1405
PspGI	CCWGG	2 cut(s)	24, 1405
PspN4I	GGNNCC	7 cut(s)	218, 269, 521, 581, 681, 979, 1581
PspPI	GGNCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
PspPPI	RGGWCCY	1 cut(s)	519
PsrI	GAACNNNNNNTAC	2 cut(s)	1375, 1407
PstI	CTGCAG	2 cut(s)	1507, 1720
PstNI	CAGNNNCTG	1 cut(s)	1715
PvuI	CGATCG	2 cut(s)	277, 830
PvuII	CAGCTG	1 cut(s)	1715
RsaI	GTAC	4 cut(s)	17, 798, 979, 1404
RsaNI	GTAC	4 cut(s)	16, 797, 978, 1403
RseI	CAYNNNNRTG	4 cut(s)	183, 1132, 1653, 1655
SapI	GCTCTTC	2 cut(s)	89, 143
SaqAI	TTAA	4 cut(s)	657, 1044, 1322, 1443
Sau96I	GGNCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
SchI	GAGTC	3 cut(s)	53, 499, 1051
ScrFI	CCNGG	3 cut(s)	26, 523, 1407
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	3 cut(s)	720, 850, 1744
SfcI	CTRYAG	4 cut(s)	100, 882, 1503, 1716
SinI	GGWCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
SmiMI	CAYNNNNRTG	4 cut(s)	183, 1132, 1653, 1655
SmlI	CTYRAG	1 cut(s)	1785
SmoI	CTYRAG	1 cut(s)	1785
Sse9I	AATT	6 cut(s)	629, 764, 817, 851, 1157, 1444
SspMI	CTAG	2 cut(s)	822, 1335
StyD4I	CCNGG	3 cut(s)	24, 521, 1405
TaaI	ACNGT	6 cut(s)	37, 56, 715, 1134, 1670, 1702
TaiI	ACGT	3 cut(s)	129, 1614, 1729
TaqI	TCGA	6 cut(s)	9, 62, 633, 830, 1222, 1614
TaqII	GACCGA	2 cut(s)	483, 761
TasI	AATT	6 cut(s)	629, 764, 817, 851, 1157, 1444
TauI	GCSGC	5 cut(s)	174, 192, 234, 288, 291
TfiI	GAWTC	1 cut(s)	949
Tru1I	TTAA	4 cut(s)	657, 1044, 1322, 1443
Tru9I	TTAA	4 cut(s)	657, 1044, 1322, 1443
TscAI	CASTG	7 cut(s)	592, 741, 1098, 1139, 1372, 1537, 1675
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	7 cut(s)	153, 228, 1184, 1709, 1712, 1715, 1718
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	653, 777, 1227, 1469, 1635, 1765
TspGWI	ACGGA	3 cut(s)	1231, 1586, 1592
TspRI	CASTG	7 cut(s)	592, 741, 1098, 1139, 1372, 1537, 1675
VpaK11BI	GGWCC	6 cut(s)	162, 268, 519, 995, 1088, 1360
XapI	RAATTY	4 cut(s)	629, 764, 817, 851
XbaI	TCTAGA	2 cut(s)	821, 1334
XceI	RCATGY	2 cut(s)	872, 1178
XmiI	GTMKAC	2 cut(s)	117, 1596
XspI	CTAG	2 cut(s)	822, 1335
ZraI	GACGTC	1 cut(s)	1612
Zsp2I	ATGCAT	2 cut(s)	870, 1737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.