Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008267

Physical Location & Seq

Genomic Coordinates Reverse (-)

22046082 .. 22047495

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAGTTTGAGGATCAGGAGGAGCACGATGAGGAGATGGAGATGGAGCCGAGTTACGACTCGCTTGTGAACAACAACGGAGGAGGAGGAGGTGGTGGCAGAGTCAGAATGGCGAGTTCCGCGGCCGAAGCGGCGGCTGCGGCTCAGCTACAACAACAACAGCAGACAAGGAAGGCGTGCAGATATAGGGAGTGCTTGAAGAACCACGCCGTGGGGATTGGAGGGCACGCGCTGGACGGGTGCGGCGAGTTCCTGGCCGCGGGAGCCGAGGGGACGCTGGACGCGCTGAAATGCGCCGCGTGTAACTGCCACCGCAACTTCCACCGCAAGGAGACCGACGAGCCGTACGGTCAGCTGGTGCCGCACCAGGGCCACGTCAGCGGACATCACAGCCACCACCACGGGGGGTTCGGGCACCCTCAATTCTCGGCGACTGGCGGGTACTACCGCACTCCCGGCGGGTACCTCCACGTGACGACGCAGCACAGGCCGCTGGCGCTGCCGTCGACCTCGGGCGGGGGAGGCACGGATCAGGACGACGACATGTCGAATCCCAGCGGAGGCGGAGGCGGCGGCGGAGGAGGAGGAGGGAGTGGGTTTGGAATGGGAATGGGAATGGGAATGGGAACGACGTCGTCCAAGAAGAGGTTCAGGACCAAGTTTAGTCAGGAGCAGAAGGAGAGGATGCTGGAGCTGGCGGAGCGGCTGGGGTGGAGGATTCAGAAGCAGGACGATGCGGCGGTGCAGAGCTTCTGCGACGAGACCGGAGTGAAGCGTCATGTCCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGGCAAGAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0015630 GO:0016070 GO:0016604 GO:0016607 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

277

Amino Acids

29.63

Weight (kDa)

6.65

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	60 - 112	4e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09880
fragaria_vesca	FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920
malus_domestica	MD01G1009900.v1.1 MD15G1339600.v1.1
prunus_persica	Prupe.6G161000_v2.0.a1
pyrus_communis	pycom01g03620 pycom15g29960
rosa_chinensis	RchiOBHm_Chr2g0119921
rosa_laevigata	RLG00000018502
rosa_multiflora	Rmu_sc0001501.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123990
rosa_rugosa	Rorug02G0225300 Rorug02G0225400
rosa_samantha	Rh2AG282500 Rh2BG293900 Rh2DG307700
rosa_wichuraiana	Rw2G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	635
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	3 cut(s)	358, 414, 462
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	506
AccII	CGCG	5 cut(s)	122, 230, 260, 284, 299
AclWI	GGATC	2 cut(s)	21, 537
AcoI	YGGCCR	2 cut(s)	123, 255
AcvI	CACGTG	1 cut(s)	472
AcyI	GRCGYC	1 cut(s)	632
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	3 cut(s)	347, 443, 464
AfiI	CCNNNNNNNGG	8 cut(s)	211, 259, 328, 368, 403, 516, 560, 645
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	1 cut(s)	199
AhdI	GACNNNNNGTC	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	2 cut(s)	252, 366
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	4 cut(s)	148, 355, 694, 750
AluI	AGCT	4 cut(s)	148, 355, 694, 750
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	326, 755
AlwI	GGATC	2 cut(s)	21, 537
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	4 cut(s)	123, 255, 370, 488
ApeKI	GCWGC	3 cut(s)	137, 481, 499
Asp700I	GAANNNNTTC	1 cut(s)	647
Asp718I	GGTACC	1 cut(s)	462
AspLEI	GCGC	4 cut(s)	232, 286, 296, 499
AspS9I	GGNCC	2 cut(s)	370, 654
AsuC2I	CCSGG	1 cut(s)	456
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	654
BaeGI	GKGCMC	2 cut(s)	228, 417
BanI	GGYRCC	3 cut(s)	358, 414, 462
BbrPI	CACGTG	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	124, 486, 493
BccI	CCATC	2 cut(s)	31, 37
BceAI	ACGGC	3 cut(s)	194, 328, 487
BciT130I	CCWGG	2 cut(s)	254, 368
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	326, 755
BfoI	RGCGCY	1 cut(s)	500
BglI	GCCNNNNNGGC	1 cut(s)	131
BlpI	GCTNAGC	1 cut(s)	144
Bme1390I	CCNGG	3 cut(s)	254, 368, 456
Bme18I	GGWCC	1 cut(s)	654
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	511
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	370, 654
BmiI	GGNNCC	5 cut(s)	48, 265, 360, 416, 464
BmrFI	CCNGG	3 cut(s)	254, 368, 456
BmsI	GCATC	3 cut(s)	675, 724, 786
BpmI	CTGGAG	1 cut(s)	710
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	770
BpuMI	CCSGG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	632
BsaI	GGTCTC	2 cut(s)	326, 755
BsaJI	CCNNGG	8 cut(s)	120, 210, 258, 267, 367, 400, 510, 817
BsaWI	WCCGGW	1 cut(s)	764
Bsc4I	CCNNNNNNNGG	8 cut(s)	211, 259, 328, 368, 403, 516, 560, 645
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	254, 368
BseDI	CCNNGG	8 cut(s)	120, 210, 258, 267, 367, 400, 510, 817
BseGI	GGATG	2 cut(s)	690, 801
BseLI	CCNNNNNNNGG	8 cut(s)	211, 259, 328, 368, 403, 516, 560, 645
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	8 cut(s)	35, 47, 96, 99, 102, 594, 597, 600
BseSI	GKGCMC	2 cut(s)	228, 417
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	124, 486, 493
BseYI	CCCAGC	2 cut(s)	554, 706
BsgI	GTGCAG	2 cut(s)	199, 764
Bsh1236I	CGCG	5 cut(s)	122, 230, 260, 284, 299
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	125, 257, 372, 490
BshNI	GGYRCC	3 cut(s)	358, 414, 462
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	456, 765
BsiWI	CGTACG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	8 cut(s)	211, 259, 328, 368, 403, 516, 560, 645
BsmAI	GTCTC	2 cut(s)	326, 755
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	4 cut(s)	125, 257, 372, 490
Bso31I	GGTCTC	2 cut(s)	326, 755
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	3 cut(s)	27, 228, 417
Bsp143I	GATC	2 cut(s)	13, 529
Bsp1720I	GCTNAGC	1 cut(s)	144
BspANI	GGCC	4 cut(s)	125, 257, 372, 490
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	5 cut(s)	122, 230, 260, 284, 299
BspLI	GGNNCC	5 cut(s)	48, 265, 360, 416, 464
BspPI	GGATC	2 cut(s)	21, 537
BspT107I	GGYRCC	3 cut(s)	358, 414, 462
BspTNI	GGTCTC	2 cut(s)	326, 755
BsrBI	CCGCTC	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	8 cut(s)	120, 210, 258, 267, 367, 400, 510, 817
BssMI	GATC	2 cut(s)	13, 529
BssNI	GRCGYC	1 cut(s)	632
Bst2UI	CCWGG	2 cut(s)	254, 368
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	638
BstACI	GRCGYC	1 cut(s)	632
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	4 cut(s)	178, 228, 495, 696
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	4 cut(s)	120, 210, 258, 400
BstF5I	GGATG	2 cut(s)	690, 801
BstFNI	CGCG	5 cut(s)	122, 230, 260, 284, 299
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	4 cut(s)	232, 286, 296, 499
BstKTI	GATC	2 cut(s)	16, 532
BstMAI	GTCTC	2 cut(s)	326, 755
BstMBI	GATC	2 cut(s)	13, 529
BstMCI	CGRYCG	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	254, 368
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	3 cut(s)	252, 366, 454
BstSLI	GKGCMC	2 cut(s)	228, 417
BstUI	CGCG	5 cut(s)	122, 230, 260, 284, 299
BstV1I	GCAGC	3 cut(s)	124, 486, 493
BstZI	CGGCCG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	125, 257, 372, 490
BtgI	CCRYGG	4 cut(s)	120, 210, 258, 400
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	690, 801
Cac8I	GCNNGC	4 cut(s)	178, 228, 495, 696
CfoI	GCGC	4 cut(s)	232, 286, 296, 499
Cfr13I	GGNCC	2 cut(s)	370, 654
Cfr42I	CCGCGG	2 cut(s)	123, 261
CseI	GACGC	4 cut(s)	283, 290, 487, 764
Csp6I	GTAC	3 cut(s)	346, 442, 463
CviAII	CATG	2 cut(s)	544, 779
CviQI	GTAC	3 cut(s)	346, 442, 463
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	15, 531
DpnII	GATC	2 cut(s)	13, 529
DraIII	CACNNNGTG	1 cut(s)	211
DriI	GACNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	2 cut(s)	123, 255
EagI	CGGCCG	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	638
Eam1105I	GACNNNNNGTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	638
EciI	GGCGGA	3 cut(s)	579, 591, 713
EclXI	CGGCCG	1 cut(s)	123
Eco31I	GGTCTC	2 cut(s)	326, 755
Eco47I	GGWCC	1 cut(s)	654
Eco52I	CGGCCG	1 cut(s)	123
Eco72I	CACGTG	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	252, 366
EcoT22I	ATGCAT	1 cut(s)	801
FaeI	CATG	2 cut(s)	547, 782
FaiI	YATR	4 cut(s)	186, 545, 780, 801
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	543, 778
FauI	CCCGC	4 cut(s)	253, 431, 452, 509
FblI	GTMKAC	1 cut(s)	506
FokI	GGATG	2 cut(s)	697, 808
GlaI	GCGC	4 cut(s)	231, 285, 295, 498
GsaI	CCCAGC	2 cut(s)	558, 710
GsuI	CTGGAG	1 cut(s)	710
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	4 cut(s)	125, 257, 372, 490
HapII	CCGG	2 cut(s)	456, 765
HgaI	GACGC	4 cut(s)	283, 290, 487, 764
HhaI	GCGC	4 cut(s)	232, 286, 296, 499
Hin1I	GRCGYC	1 cut(s)	632
Hin1II	CATG	2 cut(s)	547, 782
Hin6I	GCGC	4 cut(s)	230, 284, 294, 497
HinP1I	GCGC	4 cut(s)	230, 284, 294, 497
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	4 cut(s)	59, 102, 550, 718
HpaII	CCGG	2 cut(s)	456, 765
Hpy166II	GTNNAC	2 cut(s)	70, 507
Hpy188I	TCNGA	2 cut(s)	107, 723
Hpy188III	TCNNGA	4 cut(s)	17, 533, 652, 668
Hpy8I	GTNNAC	2 cut(s)	70, 507
Hpy99I	CGWCG	7 cut(s)	341, 481, 508, 542, 634, 637, 761
HpyAV	CCTTC	2 cut(s)	166, 670
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	3 cut(s)	375, 471, 632
HpyCH4V	TGCA	3 cut(s)	180, 745, 799
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	3 cut(s)	375, 471, 632
Hsp92I	GRCGYC	1 cut(s)	632
Hsp92II	CATG	2 cut(s)	547, 782
HspAI	GCGC	4 cut(s)	230, 284, 294, 497
KpnI	GGTACC	1 cut(s)	466
KspI	CCGCGG	2 cut(s)	123, 261
Kzo9I	GATC	2 cut(s)	13, 529
LmnI	GCTCC	6 cut(s)	22, 46, 263, 670, 691, 700
Lsp1109I	GCAGC	3 cut(s)	124, 486, 493
LweI	GCATC	3 cut(s)	675, 724, 786
MaeII	ACGT	3 cut(s)	375, 471, 632
MaeIII	GTNAC	3 cut(s)	53, 302, 472
MalI	GATC	2 cut(s)	15, 531
MbiI	CCGCTC	1 cut(s)	703
MboI	GATC	2 cut(s)	13, 529
MboII	GAAGA	2 cut(s)	211, 655
MhlI	GDGCHC	3 cut(s)	27, 228, 417
MluCI	AATT	1 cut(s)	422
MlyI	GAGTC	2 cut(s)	53, 111
Mph1103I	ATGCAT	1 cut(s)	801
MroXI	GAANNNNTTC	1 cut(s)	647
MspA1I	CMGCKG	6 cut(s)	122, 260, 355, 381, 493, 558
MspI	CCGG	2 cut(s)	456, 765
MspR9I	CCNGG	3 cut(s)	254, 368, 456
MvaI	CCWGG	2 cut(s)	254, 368
MvnI	CGCG	5 cut(s)	122, 230, 260, 284, 299
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	2 cut(s)	13, 529
NlaIII	CATG	2 cut(s)	547, 782
NlaIV	GGNNCC	5 cut(s)	48, 265, 360, 416, 464
NmeAIII	GCCGAG	4 cut(s)	75, 292, 407, 798
NmuCI	GTSAC	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	801
NspI	RCATGY	1 cut(s)	547
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	550, 718
Pfl23II	CGTACG	1 cut(s)	345
PflFI	GACNNNGTC	1 cut(s)	634
PflMI	CCANNNNNTGG	1 cut(s)	211
PleI	GAGTC	2 cut(s)	53, 110
PmaCI	CACGTG	1 cut(s)	472
PmlI	CACGTG	1 cut(s)	472
PpsI	GAGTC	2 cut(s)	53, 110
Ppu21I	YACGTR	1 cut(s)	472
PscI	ACATGT	1 cut(s)	543
Psp6I	CCWGG	2 cut(s)	252, 366
PspCI	CACGTG	1 cut(s)	472
PspFI	CCCAGC	2 cut(s)	554, 706
PspGI	CCWGG	2 cut(s)	252, 366
PspLI	CGTACG	1 cut(s)	345
PspN4I	GGNNCC	5 cut(s)	48, 265, 360, 416, 464
PspPI	GGNCC	2 cut(s)	370, 654
PsyI	GACNNNGTC	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	3 cut(s)	347, 443, 464
RsaNI	GTAC	3 cut(s)	346, 442, 463
SacII	CCGCGG	2 cut(s)	123, 261
SalI	GTCGAC	1 cut(s)	505
Sau3AI	GATC	2 cut(s)	13, 529
Sau96I	GGNCC	2 cut(s)	370, 654
SchI	GAGTC	2 cut(s)	53, 111
ScrFI	CCNGG	3 cut(s)	254, 368, 456
SduI	GDGCHC	3 cut(s)	27, 228, 417
SfaNI	GCATC	3 cut(s)	675, 724, 786
Sfr303I	CCGCGG	2 cut(s)	123, 261
SgrBI	CCGCGG	2 cut(s)	123, 261
SinI	GGWCC	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	252, 366, 454
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	3 cut(s)	378, 474, 635
TaqI	TCGA	2 cut(s)	506, 548
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	550, 718
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	3 cut(s)	137, 481, 499
Tsp45I	GTSAC	1 cut(s)	472
TspGWI	ACGGA	2 cut(s)	93, 542
Tth111I	GACNNNGTC	1 cut(s)	634
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	654
XceI	RCATGY	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	647
ZraI	GACGTC	1 cut(s)	633
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.