Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007839

Physical Location & Seq

Genomic Coordinates Forward (+)

26609616 .. 26622364

Gene Structure 12749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1160000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2289 bp

ATGAAGCCCCACACGAACAGAGGATTCGCCACGACTGGCCCGCTTCACGTAACATCTCCTCCACGAGCCTCGCCGGAGCTCTCTCTTAGCCGGCGATTACCGGCCACAGCACACGTTCCCCGGCGAGTTTCATACGGTAAACGCCGCCGCACCAGCATCTCCGCAGTTCTCCGCCGAAACCAGCCCGAAATTTCGGATCAGGAGACCGGTAGCTCAGTAGAAAATGCTGATTATTCCGACGGAGCTCGACGGGGCCCGCTCCATACGAGGCGGCACGCGCTGCTCGCGCCGACGCTGGCGCTGGGCGCGTGGTTTCTGAAATCGACGATAGCGAGCGCCGAGGACGCGCCGTCTACATCGCCGCCGCCATCACCGTCGCAGACAGTACCGGTGCCGAGAGCAGAGGAGAAGGAGGAGGAGGATGCGATAACGTCGAGAATATACGACGCGTCGGTGATCGGAGAGCCAATGGCGATGGGGAAGGACAAGGGCAAGGTATGGGAGAAAGTGATGAATGCTCGGATTGTGTATTTAGGCGAAGCCGAACAGGTTCCGATTCACGACGACAAAGAATTGGAGCTCGAGATTGTGAAGAATTTGGGGAAAAAGTGTTTGGAGAGTGAGCGAGCATTATCTTTGGCTCTTGAAGCATTTCCTTGTAATCTCCAGGACCAGCTCAATCAGTACATGGACAAAAGCATAGATGGAGAAGCTTTGAAGTCCTACACATCACATTGGCCACCTCAACGCTGGCAGGAGTATGAGCCTCTCCTGAGTTACTGTCGGGATAACGGAATTCGGCTAGTGGCTTGTGGAACTCCACTCAAGGTTTTAAGGACTGTCCAAGCAGAGGGAATTAGTCGGCTTTCAGAGGCTGATCGAAAAACATATGCTCCTCCAGCGGGTTCGGGCTTCATATCAGGCTTCACTTCTATCACACGCAGACCACCAGTTGATTCAAATTCCCGGAGTCAATCTGTTCCTTTTGGGCCAAGCTCATATCTTTCTGCGCAAGCAAGAGTGGTTGAGGATTATACTATGTCCCAGATTATTTTAAAGGCCATGGCGGATGGAGGAGCAAGTGGTATGCTAGTGGTGGTGACAGGTGCAAGCCATGTTAAATATGGGATTAGAGGGACTGGGCTGCCGGCCAGAATTTCAAAGAAGTTGCAAAAGAAAAACCAAGTAGTTATATTACTTGATCCTGAAAGACAGCACATACGACGAGAGGGAGAAGTTCCTGTTGCTGATTTCCTGTGGTATTCTGCTGCCAGAACCTGCAGCAGGAATTGTTTTGATCGCGCTGAAATTGCTCGAGTTATGAATGCAGCAGGCAGGAGGCGAGAAGCCCTTCCACAGGACCTTCAGAAAGGACTGGATCTTGGTTTGGTATCCCCAAAGGTATTACAGAACTTCTTTGATCTGGAGCAGTATCCTCTTCTTGCAGAACTTGCTCAACGTTTCCAGGGTTTCAGGGAAAGATTGTTGGCAGATCCTAAATTCTTGAATAGATTAGCTATAGAAGAAGCTATATCATTAACTACTACTCTCTTAGCACAGTATGAGAAGCGCAGAGAAAATTTCTTTGAAGAGCTGGACTATGTTTTTACAGATACTCTAAGGGGATCAGTGGTTGATTTCTTTACAGTGTGGCTTCCCGCCCCAACATTGTCATTCCTTTCATATGCTGATGAGATGAACGCGCCTGATAGCATGGATGCCATTAAAGGTCTCCTTGGGTCCATCCCAGATAATGCGTTTCAGAAGAATCTTGTGGGGACGGATTGGAGTATCAATTATAGACTTGCATCAGTGTTTCTGGGTGGTTTAAAATTAGCTGGTGTTGGATTCATTTCAAGCATTGCGGCTGTTGCTGCCTCAAATGGTTTGTTTGCTGTTCGCAAATTCATTAATCCAACTCTGATTAGTGATCAGGAAAAGAAAAGAACTCCAATACTTAAAACAGCAATAATTTATTCATCCTTTCTCGGAACATCAGCAAATCTCCGTTATCAGATTATTGCTGGAGTAATAGAGCATCGAATTTCTGACGAGTTTGCTTCTCAAACATTACTTGTAAATCTGCTGTCTTTTGTTTCTCGGACAATAAACTCGTATTGGGGAACTCAGCAATGGATTGATCTTGCACGCTTTACTGGACTGCAATCTCGGAAGAGTGAGTCATCCTCTCACCAAATGCCAGAAATGCCCGATTCTACTAACCAAATGGCAGCACTGGAAGGTAACAACACGGAGGAGACAAGTTTAGATGAAATCCAAAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009741 GO:0009987 GO:0010033 GO:0014070 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cofac_haem_bdg RETICULATA-like

Protein Analysis

763

Amino Acids

84.49

Weight (kDa)

8.48

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofac_haem_bdg	PF04187	166 - 386	8.1e-44	Haem-binding uptake, Tiki superfamily, ChaN
RETICULATA-like	PF11891	493 - 677	7.4e-61	Protein RETICULATA-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40400 AT2G40400 AT2G40400 AT3G56140 AT3G56140 AT3G56140
fragaria_vesca	FvH4_7g25380 FvH4_7g25380 FvH4_7g25380
malus_domestica	MD01G1160000.v1.1
prunus_persica	Prupe.2G258000_v2.0.a1
pyrus_communis	pycom01g17640
rosa_chinensis	RchiOBHm_Chr1g0371311 RchiOBHm_Chr1g0371331
rosa_laevigata	RLG00000026971
rosa_multiflora	Rmu_co8326835.1_g000001 Rmu_sc0000809.1_g000039
rosa_roxburghii	Rroxscaffold_4G00285790
rosa_rugosa	Rorug01G0363100
rosa_samantha	Rh1AG373000 Rh1BG336500 Rh1CG349900 Rh1DG367600
rosa_wichuraiana	Rw1G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1011
Acc36I	ACCTGC	1 cut(s)	1286
AccB1I	GGYRCC	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	353
AccII	CGCG	7 cut(s)	278, 287, 308, 347, 449, 1302, 1703
AclI	AACGTT	1 cut(s)	1459
AclWI	GGATC	5 cut(s)	204, 1196, 1386, 1487, 1633
AcoI	YGGCCR	3 cut(s)	102, 737, 1149
AcsI	RAATTY	9 cut(s)	189, 595, 795, 961, 1155, 1499, 1579, 1904, 2043
AcuI	CTGAAG	1 cut(s)	1349
AfaI	GTAC	2 cut(s)	387, 686
AfiI	CCNNNNNNNGG	4 cut(s)	850, 902, 1284, 1357
AflIII	ACRYGT	2 cut(s)	112, 447
AgeI	ACCGGT	2 cut(s)	206, 388
AgsI	TTSAA	7 cut(s)	647, 718, 960, 1161, 1507, 1589, 1857
AhdI	GACNNNNNGTC	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	666, 1464
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
Alw21I	GWGCWC	3 cut(s)	81, 247, 582
Alw26I	GTCTC	3 cut(s)	197, 1736, 2252
AlwI	GGATC	5 cut(s)	204, 1196, 1386, 1487, 1633
AlwNI	CAGNNNCTG	2 cut(s)	875, 1278
Ama87I	CYCGRG	2 cut(s)	581, 1314
AoxI	GGCC	7 cut(s)	37, 102, 253, 737, 989, 1059, 1149
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	7 cut(s)	280, 1144, 1268, 1281, 1328, 1874, 2231
ApoI	RAATTY	9 cut(s)	189, 595, 795, 961, 1155, 1499, 1579, 1904, 2043
AseI	ATTAAT	1 cut(s)	1911
AsiGI	ACCGGT	2 cut(s)	206, 388
Asp700I	GAANNNNTTC	3 cut(s)	549, 651, 1350
AspS9I	GGNCC	7 cut(s)	38, 253, 254, 670, 989, 1360, 1740
AsuC2I	CCSGG	2 cut(s)	121, 967
AsuHPI	GGTGA	4 cut(s)	363, 466, 1111, 2183
AvaI	CYCGRG	2 cut(s)	581, 1314
AvaII	GGWCC	3 cut(s)	670, 1360, 1740
BaeGI	GKGCMC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	4 cut(s)	81, 247, 257, 582
BauI	CACGAG	1 cut(s)	63
Bbv12I	GWGCWC	3 cut(s)	81, 247, 582
BbvI	GCAGC	7 cut(s)	267, 1131, 1255, 1293, 1340, 1861, 2243
BccI	CCATC	5 cut(s)	376, 469, 698, 1064, 1751
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	2 cut(s)	668, 1466
BciVI	GTATCC	2 cut(s)	1402, 1443
BclI	TGATCA	1 cut(s)	1930
BcnI	CCSGG	2 cut(s)	121, 967
BcoDI	GTCTC	3 cut(s)	197, 1736, 2252
BfaI	CTAG	2 cut(s)	803, 1091
BfmI	CTRYAG	2 cut(s)	1279, 1518
BfoI	RGCGCY	2 cut(s)	302, 339
BfuAI	ACCTGC	1 cut(s)	1286
BfuI	GTATCC	2 cut(s)	1402, 1443
Bme1390I	CCNGG	4 cut(s)	121, 668, 967, 1466
Bme18I	GGWCC	3 cut(s)	670, 1360, 1740
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmeT110I	CYCGRG	2 cut(s)	581, 1314
BmgT120I	GGNCC	7 cut(s)	38, 253, 254, 670, 989, 1360, 1740
BmiI	GGNNCC	5 cut(s)	254, 255, 393, 552, 1741
BmrFI	CCNGG	4 cut(s)	121, 668, 967, 1466
BmrI	ACTGGG	1 cut(s)	1149
BmsI	GCATC	5 cut(s)	165, 412, 1708, 1817, 2047
BmuI	ACTGGG	1 cut(s)	1149
BplI	GAGNNNNNCTC	2 cut(s)	2171, 2203
BpmI	CTGGAG	4 cut(s)	650, 882, 1445, 2046
BpuEI	CTTGAG	1 cut(s)	809
BpuMI	CCSGG	2 cut(s)	121, 967
BsaAI	YACGTR	1 cut(s)	49
BsaI	GGTCTC	2 cut(s)	197, 1736
BsaJI	CCNNGG	5 cut(s)	119, 339, 1062, 1465, 1735
BsaWI	WCCGGW	2 cut(s)	206, 388
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 877, 907
Bsc4I	CCNNNNNNNGG	4 cut(s)	850, 902, 1284, 1357
Bse118I	RCCGGY	5 cut(s)	90, 100, 206, 388, 1147
Bse1I	ACTGG	6 cut(s)	40, 950, 1144, 1380, 2161, 2241
Bse3DI	GCAATG	2 cut(s)	1860, 2138
BseBI	CCWGG	2 cut(s)	668, 1466
BseDI	CCNNGG	5 cut(s)	119, 339, 1062, 1465, 1735
BseGI	GGATG	6 cut(s)	427, 1075, 1723, 1743, 1979, 2183
BseLI	CCNNNNNNNGG	4 cut(s)	850, 902, 1284, 1357
BseMI	GCAATG	2 cut(s)	1860, 2138
BseMII	CTCAG	3 cut(s)	228, 764, 2141
BseNI	ACTGG	6 cut(s)	40, 950, 1144, 1380, 2161, 2241
BseRI	GAGGAG	7 cut(s)	48, 419, 428, 431, 885, 1089, 2270
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	7 cut(s)	267, 1131, 1255, 1293, 1340, 1861, 2243
BseYI	CCCAGC	1 cut(s)	301
Bsh1236I	CGCG	7 cut(s)	278, 287, 308, 347, 449, 1302, 1703
BshFI	GGCC	7 cut(s)	39, 104, 255, 739, 991, 1061, 1151
BshNI	GGYRCC	1 cut(s)	391
BshTI	ACCGGT	2 cut(s)	206, 388
BsiHKAI	GWGCWC	3 cut(s)	81, 247, 582
BsiHKCI	CYCGRG	2 cut(s)	581, 1314
BsiSI	CCGG	8 cut(s)	74, 91, 101, 121, 207, 389, 967, 1148
BslFI	GGGAC	3 cut(s)	1027, 1150, 1792
BslI	CCNNNNNNNGG	4 cut(s)	850, 902, 1284, 1357
BsmAI	GTCTC	3 cut(s)	197, 1736, 2252
BsmFI	GGGAC	3 cut(s)	1027, 1150, 1792
BsmI	GAATGC	2 cut(s)	520, 1330
BsnI	GGCC	7 cut(s)	39, 104, 255, 739, 991, 1061, 1151
Bso31I	GGTCTC	2 cut(s)	197, 1736
BsoBI	CYCGRG	2 cut(s)	581, 1314
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	4 cut(s)	81, 247, 257, 582
Bsp19I	CCATGG	1 cut(s)	1062
BspANI	GGCC	7 cut(s)	39, 104, 255, 739, 991, 1061, 1151
BspCNI	CTCAG	3 cut(s)	227, 765, 2140
BspFNI	CGCG	7 cut(s)	278, 287, 308, 347, 449, 1302, 1703
BspLI	GGNNCC	5 cut(s)	254, 255, 393, 552, 1741
BspMAI	CTGCAG	1 cut(s)	1283
BspMI	ACCTGC	1 cut(s)	1286
BspPI	GGATC	5 cut(s)	204, 1196, 1386, 1487, 1633
BspQI	GCTCTTC	1 cut(s)	1584
BspT107I	GGYRCC	1 cut(s)	391
BspTNI	GGTCTC	2 cut(s)	197, 1736
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	1860, 2138
BsrFI	RCCGGY	5 cut(s)	90, 100, 206, 388, 1147
BsrI	ACTGG	6 cut(s)	40, 950, 1144, 1380, 2161, 2241
BssAI	RCCGGY	5 cut(s)	90, 100, 206, 388, 1147
BssECI	CCNNGG	5 cut(s)	119, 339, 1062, 1465, 1735
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	1062, 1735
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	668, 1466
Bst4CI	ACNGT	7 cut(s)	137, 375, 385, 782, 841, 1560, 1648
Bst6I	CTCTTC	3 cut(s)	1443, 1584, 2168
BstAPI	GCANNNNNTGC	2 cut(s)	280, 1451
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	6 cut(s)	86, 214, 773, 1552, 1619, 2127
BstDSI	CCRYGG	1 cut(s)	1062
BstENI	CCTNNNNNAGG	2 cut(s)	1282, 1355
BstF5I	GGATG	6 cut(s)	427, 1075, 1723, 1743, 1979, 2183
BstFNI	CGCG	7 cut(s)	278, 287, 308, 347, 449, 1302, 1703
BstH2I	RGCGCY	2 cut(s)	302, 339
BstMAI	GTCTC	3 cut(s)	197, 1736, 2252
BstNI	CCWGG	2 cut(s)	668, 1466
BstSCI	CCNGG	4 cut(s)	119, 666, 965, 1464
BstSFI	CTRYAG	2 cut(s)	1279, 1518
BstSLI	GKGCMC	1 cut(s)	257
BstUI	CGCG	7 cut(s)	278, 287, 308, 347, 449, 1302, 1703
BstV1I	GCAGC	7 cut(s)	267, 1131, 1255, 1293, 1340, 1861, 2243
BstX2I	RGATCY	2 cut(s)	1378, 1492
BstYI	RGATCY	2 cut(s)	1378, 1492
BsuI	GTATCC	2 cut(s)	1402, 1443
BsuRI	GGCC	7 cut(s)	39, 104, 255, 739, 991, 1061, 1151
BtgI	CCRYGG	1 cut(s)	1062
BtgZI	GCGATG	2 cut(s)	342, 488
BtsCI	GGATG	6 cut(s)	427, 1075, 1723, 1743, 1979, 2183
BtsIMutI	CAGTG	4 cut(s)	1635, 1653, 1818, 2234
BveI	ACCTGC	1 cut(s)	1286
CaiI	CAGNNNCTG	2 cut(s)	875, 1278
Cfr10I	RCCGGY	5 cut(s)	90, 100, 206, 388, 1147
Cfr13I	GGNCC	7 cut(s)	38, 253, 254, 670, 989, 1360, 1740
CseI	GACGC	4 cut(s)	301, 353, 438, 455
Csp6I	GTAC	2 cut(s)	386, 685
CspAI	ACCGGT	2 cut(s)	206, 388
CviAII	CATG	4 cut(s)	688, 1063, 1115, 1714
CviQI	GTAC	2 cut(s)	386, 685
DdeI	CTNAG	6 cut(s)	86, 214, 773, 1552, 1619, 2127
DraI	TTTAAA	2 cut(s)	1056, 1830
DriI	GACNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	3 cut(s)	102, 737, 1149
Eam1104I	CTCTTC	3 cut(s)	1443, 1584, 2168
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	3 cut(s)	1443, 1584, 2168
EciI	GGCGGA	2 cut(s)	161, 1082
Ecl136II	GAGCTC	3 cut(s)	79, 245, 580
Eco130I	CCWWGG	2 cut(s)	1062, 1735
Eco24I	GRGCYC	4 cut(s)	81, 247, 257, 582
Eco31I	GGTCTC	2 cut(s)	197, 1736
Eco47I	GGWCC	3 cut(s)	670, 1360, 1740
Eco53kI	GAGCTC	3 cut(s)	79, 245, 580
Eco57I	CTGAAG	1 cut(s)	1349
Eco88I	CYCGRG	2 cut(s)	581, 1314
EcoICRI	GAGCTC	3 cut(s)	79, 245, 580
EcoNI	CCTNNNNNAGG	2 cut(s)	1282, 1355
EcoO109I	RGGNCCY	2 cut(s)	253, 1360
EcoRI	GAATTC	1 cut(s)	795
EcoRII	CCWGG	2 cut(s)	666, 1464
EcoT14I	CCWWGG	2 cut(s)	1062, 1735
EcoT38I	GRGCYC	4 cut(s)	81, 247, 257, 582
ErhI	CCWWGG	2 cut(s)	1062, 1735
FaeI	CATG	4 cut(s)	691, 1066, 1118, 1717
FalI	AAGNNNNNCTT	2 cut(s)	1719, 1751
FaqI	GGGAC	3 cut(s)	1027, 1150, 1792
FatI	CATG	4 cut(s)	687, 1062, 1114, 1713
FauI	CCCGC	4 cut(s)	48, 264, 895, 1666
FauNDI	CATATG	2 cut(s)	889, 1684
FbaI	TGATCA	1 cut(s)	1930
FblI	GTMKAC	1 cut(s)	353
FokI	GGATG	6 cut(s)	434, 1082, 1730, 1730, 1966, 2170
FriOI	GRGCYC	4 cut(s)	81, 247, 257, 582
FspBI	CTAG	2 cut(s)	803, 1091
FspI	TGCGCA	1 cut(s)	1011
GsaI	CCCAGC	1 cut(s)	305
GsuI	CTGGAG	4 cut(s)	650, 882, 1445, 2046
HaeII	RGCGCY	2 cut(s)	302, 339
HaeIII	GGCC	7 cut(s)	39, 104, 255, 739, 991, 1061, 1151
HapII	CCGG	8 cut(s)	74, 91, 101, 121, 207, 389, 967, 1148
HgaI	GACGC	4 cut(s)	301, 353, 438, 455
Hin1II	CATG	4 cut(s)	691, 1066, 1118, 1717
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	8 cut(s)	24, 556, 956, 970, 1768, 1848, 2180, 2213
HpaII	CCGG	8 cut(s)	74, 91, 101, 121, 207, 389, 967, 1148
HphI	GGTGA	4 cut(s)	363, 466, 1111, 2183
Hpy166II	GTNNAC	2 cut(s)	140, 354
Hpy8I	GTNNAC	2 cut(s)	140, 354
HpyAV	CCTTC	5 cut(s)	403, 475, 1361, 1373, 2234
HpyCH4III	ACNGT	7 cut(s)	137, 375, 385, 782, 841, 1560, 1648
HpyCH4IV	ACGT	4 cut(s)	48, 114, 431, 1459
HpyCH4V	TGCA	8 cut(s)	1109, 1171, 1281, 1328, 1445, 1808, 2147, 2164
HpyF3I	CTNAG	6 cut(s)	86, 214, 773, 1552, 1619, 2127
HpySE526I	ACGT	4 cut(s)	48, 114, 431, 1459
Hsp92II	CATG	4 cut(s)	691, 1066, 1118, 1717
KroI	GCCGGC	2 cut(s)	90, 1147
KroNI	GCCGGC	2 cut(s)	92, 1149
Ksp22I	TGATCA	1 cut(s)	1930
LguI	GCTCTTC	1 cut(s)	1584
LmnI	GCTCC	7 cut(s)	76, 242, 264, 577, 898, 1076, 1426
Lsp1109I	GCAGC	7 cut(s)	267, 1131, 1255, 1293, 1340, 1861, 2243
LweI	GCATC	5 cut(s)	165, 412, 1708, 1817, 2047
MaeI	CTAG	2 cut(s)	803, 1091
MaeII	ACGT	4 cut(s)	48, 114, 431, 1459
MaeIII	GTNAC	4 cut(s)	49, 776, 1099, 2243
MbiI	CCGCTC	1 cut(s)	259
MboII	GAAGA	6 cut(s)	604, 1430, 1535, 1601, 1777, 2185
MflI	RGATCY	2 cut(s)	1378, 1492
MhlI	GDGCHC	4 cut(s)	81, 247, 257, 582
MlsI	TGGCCA	1 cut(s)	739
MluI	ACGCGT	1 cut(s)	447
MluNI	TGGCCA	1 cut(s)	739
MlyI	GAGTC	2 cut(s)	979, 2189
MmeI	TCCRAC	3 cut(s)	261, 1825, 1940
Mox20I	TGGCCA	1 cut(s)	739
MroNI	GCCGGC	2 cut(s)	90, 1147
MroXI	GAANNNNTTC	3 cut(s)	549, 651, 1350
MscI	TGGCCA	1 cut(s)	739
MseI	TTAA	8 cut(s)	833, 1055, 1119, 1538, 1725, 1829, 1911, 1959
Msp20I	TGGCCA	1 cut(s)	739
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	8 cut(s)	74, 91, 101, 121, 207, 389, 967, 1148
MspR9I	CCNGG	4 cut(s)	121, 668, 967, 1466
Mva1269I	GAATGC	2 cut(s)	520, 1330
MvaI	CCWGG	2 cut(s)	668, 1466
MvnI	CGCG	7 cut(s)	278, 287, 308, 347, 449, 1302, 1703
NaeI	GCCGGC	2 cut(s)	92, 1149
NciI	CCSGG	2 cut(s)	121, 967
NcoI	CCATGG	1 cut(s)	1062
NdeI	CATATG	2 cut(s)	889, 1684
NgoMIV	GCCGGC	2 cut(s)	90, 1147
NlaIII	CATG	4 cut(s)	691, 1066, 1118, 1717
NlaIV	GGNNCC	5 cut(s)	254, 255, 393, 552, 1741
NmeAIII	GCCGAG	2 cut(s)	364, 420
NmuCI	GTSAC	1 cut(s)	1099
NsbI	TGCGCA	1 cut(s)	1011
PaeR7I	CTCGAG	2 cut(s)	581, 1314
PciSI	GCTCTTC	1 cut(s)	1584
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PctI	GAATGC	2 cut(s)	520, 1330
PdiI	GCCGGC	2 cut(s)	92, 1149
PdmI	GAANNNNTTC	3 cut(s)	549, 651, 1350
PfeI	GAWTC	6 cut(s)	24, 556, 956, 1768, 1848, 2213
PfoI	TCCNGGA	2 cut(s)	666, 965
PinAI	ACCGGT	2 cut(s)	206, 388
PleI	GAGTC	2 cut(s)	978, 2188
PpsI	GAGTC	2 cut(s)	978, 2188
Ppu21I	YACGTR	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	1360
PshBI	ATTAAT	1 cut(s)	1911
Psp124BI	GAGCTC	3 cut(s)	81, 247, 582
Psp1406I	AACGTT	1 cut(s)	1459
Psp5II	RGGWCCY	1 cut(s)	1360
Psp6I	CCWGG	2 cut(s)	666, 1464
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	2 cut(s)	666, 1464
PspN4I	GGNNCC	5 cut(s)	254, 255, 393, 552, 1741
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	7 cut(s)	38, 253, 254, 670, 989, 1360, 1740
PspPPI	RGGWCCY	1 cut(s)	1360
PspXI	VCTCGAGB	1 cut(s)	1314
PstI	CTGCAG	1 cut(s)	1283
PstNI	CAGNNNCTG	2 cut(s)	875, 1278
PsuI	RGATCY	2 cut(s)	1378, 1492
RsaI	GTAC	2 cut(s)	387, 686
RsaNI	GTAC	2 cut(s)	386, 685
SacI	GAGCTC	3 cut(s)	81, 247, 582
SapI	GCTCTTC	1 cut(s)	1584
SaqAI	TTAA	8 cut(s)	833, 1055, 1119, 1538, 1725, 1829, 1911, 1959
Sau96I	GGNCC	7 cut(s)	38, 253, 254, 670, 989, 1360, 1740
SchI	GAGTC	2 cut(s)	979, 2189
ScrFI	CCNGG	4 cut(s)	121, 668, 967, 1466
SduI	GDGCHC	4 cut(s)	81, 247, 257, 582
SfaNI	GCATC	5 cut(s)	165, 412, 1708, 1817, 2047
SfcI	CTRYAG	2 cut(s)	1279, 1518
Sfr274I	CTCGAG	2 cut(s)	581, 1314
SinI	GGWCC	3 cut(s)	670, 1360, 1740
SlaI	CTCGAG	2 cut(s)	581, 1314
SmlI	CTYRAG	3 cut(s)	581, 824, 1314
SmoI	CTYRAG	3 cut(s)	581, 824, 1314
SspMI	CTAG	2 cut(s)	803, 1091
SstI	GAGCTC	3 cut(s)	81, 247, 582
StyD4I	CCNGG	4 cut(s)	119, 666, 965, 1464
StyI	CCWWGG	2 cut(s)	1062, 1735
TaaI	ACNGT	7 cut(s)	137, 375, 385, 782, 841, 1560, 1648
TaiI	ACGT	4 cut(s)	51, 117, 434, 1462
TaqI	TCGA	7 cut(s)	247, 323, 434, 582, 880, 1315, 2041
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	6 cut(s)	147, 150, 274, 364, 367, 1868
TfiI	GAWTC	6 cut(s)	24, 556, 956, 1768, 1848, 2213
Tru1I	TTAA	8 cut(s)	833, 1055, 1119, 1538, 1725, 1829, 1911, 1959
Tru9I	TTAA	8 cut(s)	833, 1055, 1119, 1538, 1725, 1829, 1911, 1959
TscAI	CASTG	4 cut(s)	1635, 1653, 1818, 2241
TseFI	GTSAC	1 cut(s)	1099
TseI	GCWGC	7 cut(s)	280, 1144, 1268, 1281, 1328, 1874, 2231
Tsp45I	GTSAC	1 cut(s)	1099
TspGWI	ACGGA	5 cut(s)	255, 807, 1796, 1997, 2267
TspRI	CASTG	4 cut(s)	1635, 1653, 1818, 2241
VpaK11BI	GGWCC	3 cut(s)	670, 1360, 1740
VspI	ATTAAT	1 cut(s)	1911
XagI	CCTNNNNNAGG	2 cut(s)	1282, 1355
XapI	RAATTY	9 cut(s)	189, 595, 795, 961, 1155, 1499, 1579, 1904, 2043
XcmI	CCANNNNNNNNNTGG	2 cut(s)	747, 1121
XhoI	CTCGAG	2 cut(s)	581, 1314
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	3 cut(s)	549, 651, 1350
XspI	CTAG	2 cut(s)	803, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.