Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326835.1

Orthogroup ID

OG0007839

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 964

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326835.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

gtgccggtgcccgttccgagagctgaggagaagaagaaaaaagaggatgatgtgataacgtcgaggatttacgacgcgacggcgatcggagagccactggcggtgggaaaagacaagagcaaggtctgggagaagctgatgaaggctagggttgtgtatctaggcgaagcagagcaggttccgattcgcgacgataaagaattggagctcgaaattgtgaggaatatgaacaagaggtgcttggagagtgagaaagccttggctttggctcttgaatcttttccatgtgatcttcaggaccagctcaatcagtacatgaacaaaagcatagatggtgaagctttgaagtcatacacttcacattggccgccgcaacggtggcaggagtatgagcctcttctaagttactgccgagataatggtgttcggcttgtggcttgtggtactccactcgcggtcttacggactgtacaagcggagggaattcgtgggctttcaaaggctgatcgtaaaatgtatgcccctccagcaggttcggggttcatctcaggcttcacttcgatcacacgcagatcaccagttgatagtaattctccgactcaaactgttccatttgggccaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009741 GO:0009987 GO:0010033 GO:0014070 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cofac_haem_bdg RETICULATA-like

Protein Analysis

208

Amino Acids

23.23

Weight (kDa)

7.76

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40400 AT2G40400 AT2G40400 AT3G56140 AT3G56140 AT3G56140
fragaria_vesca	FvH4_7g25380 FvH4_7g25380 FvH4_7g25380
malus_domestica	MD01G1160000.v1.1
prunus_persica	Prupe.2G258000_v2.0.a1
pyrus_communis	pycom01g17640
rosa_chinensis	RchiOBHm_Chr1g0371311 RchiOBHm_Chr1g0371331
rosa_laevigata	RLG00000026971
rosa_multiflora	Rmu_co8326835.1_g000001 Rmu_sc0000809.1_g000039
rosa_roxburghii	Rroxscaffold_4G00285790
rosa_rugosa	Rorug01G0363100
rosa_samantha	Rh1AG373000 Rh1BG336500 Rh1CG349900 Rh1DG367600
rosa_wichuraiana	Rw1G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	166, 521
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	3 cut(s)	77, 189, 455
AciI	CCGC	5 cut(s)	101, 368, 371, 455, 476
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	3 cut(s)	314, 445, 471
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	275, 346, 498
AluBI	AGCT	5 cut(s)	23, 136, 208, 304, 341
AluI	AGCT	5 cut(s)	23, 136, 208, 304, 341
Alw21I	GWGCWC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	365, 617
ApoI	RAATTY	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	298, 617
AsuHPI	GGTGA	2 cut(s)	347, 567
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	147, 161
BfuAI	ACCTGC	2 cut(s)	166, 521
BisI	GCNGC	2 cut(s)	368, 371
BlsI	GCNGC	2 cut(s)	369, 372
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	298, 617
BmiI	GGNNCC	2 cut(s)	9, 180
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	102, 578
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	15, 561
BseNI	ACTGG	2 cut(s)	102, 578
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	12
Bsh1236I	CGCG	3 cut(s)	77, 189, 455
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	367, 619
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	530
BsnI	GGCC	2 cut(s)	367, 619
Bsp1286I	GDGCHC	2 cut(s)	12, 210
Bsp1407I	TGTACA	1 cut(s)	469
Bsp143I	GATC	5 cut(s)	84, 289, 505, 561, 572
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	5 cut(s)	101, 368, 371, 455, 476
BspANI	GGCC	2 cut(s)	367, 619
BspCNI	CTCAG	2 cut(s)	16, 560
BspFNI	CGCG	3 cut(s)	77, 189, 455
BspLI	GGNNCC	2 cut(s)	9, 180
BspMI	ACCTGC	2 cut(s)	166, 521
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	102, 578
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	5 cut(s)	84, 289, 505, 561, 572
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	378, 469, 607
Bst6I	CTCTTC	1 cut(s)	402
BstAUI	TGTACA	1 cut(s)	469
BstDEI	CTNAG	3 cut(s)	24, 401, 547
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	3 cut(s)	77, 189, 455
BstKTI	GATC	5 cut(s)	87, 292, 508, 564, 575
BstMBI	GATC	5 cut(s)	84, 289, 505, 561, 572
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 527
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	3 cut(s)	77, 189, 455
BsuRI	GGCC	2 cut(s)	367, 619
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	95
BtuMI	TCGCGA	1 cut(s)	189
BveI	ACCTGC	2 cut(s)	166, 521
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	298, 617
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	313, 444, 470
CviAII	CATG	2 cut(s)	285, 316
CviQI	GTAC	3 cut(s)	313, 444, 470
DdeI	CTNAG	3 cut(s)	24, 401, 547
DpnI	GATC	5 cut(s)	86, 291, 507, 563, 574
DpnII	GATC	5 cut(s)	84, 289, 505, 561, 572
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	288, 319
FaiI	YATR	7 cut(s)	227, 286, 317, 329, 352, 390, 519
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FatI	CATG	2 cut(s)	284, 315
Fnu4HI	GCNGC	2 cut(s)	368, 371
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	368, 371
FspBI	CTAG	2 cut(s)	147, 161
GluI	GCNGC	2 cut(s)	368, 371
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	367, 619
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	288, 319
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	3 cut(s)	184, 275, 598
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	347, 567
Hpy188I	TCNGA	4 cut(s)	18, 89, 183, 597
Hpy188III	TCNNGA	3 cut(s)	188, 272, 296
Hpy99I	CGWCG	4 cut(s)	64, 77, 82, 194
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	378, 469, 607
HpyCH4IV	ACGT	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 527
HpyF3I	CTNAG	3 cut(s)	24, 401, 547
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	288, 319
Kzo9I	GATC	5 cut(s)	84, 289, 505, 561, 572
LmnI	GCTCC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	147, 161
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	86, 291, 507, 563, 574
MboI	GATC	5 cut(s)	84, 289, 505, 561, 572
MboII	GAAGA	4 cut(s)	43, 46, 284, 389
MhlI	GDGCHC	2 cut(s)	12, 210
MluCI	AATT	4 cut(s)	200, 213, 483, 589
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	8 cut(s)	19, 37, 57, 213, 228, 405, 472, 534
MroXI	GAANNNNTTC	1 cut(s)	279
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	3 cut(s)	77, 189, 455
MwoI	GCNNNNNNNGC	2 cut(s)	379, 527
NdeII	GATC	5 cut(s)	84, 289, 505, 561, 572
NlaIII	CATG	2 cut(s)	288, 319
NlaIV	GGNNCC	2 cut(s)	9, 180
NmeAIII	GCCGAG	1 cut(s)	437
NruI	TCGCGA	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	184, 275
PkrI	GCNGC	2 cut(s)	369, 372
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	9, 180
PspPI	GGNCC	2 cut(s)	298, 617
PvuI	CGATCG	1 cut(s)	87
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	3 cut(s)	314, 445, 471
RsaNI	GTAC	3 cut(s)	313, 444, 470
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	2 cut(s)	368, 371
Sau3AI	GATC	5 cut(s)	84, 289, 505, 561, 572
Sau96I	GGNCC	2 cut(s)	298, 617
SchI	GAGTC	1 cut(s)	592
SduI	GDGCHC	2 cut(s)	12, 210
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	4 cut(s)	200, 213, 483, 589
SsiI	CCGC	5 cut(s)	101, 368, 371, 455, 476
SspMI	CTAG	2 cut(s)	147, 161
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	378, 469, 607
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	62, 210, 560
TasI	AATT	4 cut(s)	200, 213, 483, 589
TatI	WGTACW	2 cut(s)	312, 469
TauI	GCSGC	2 cut(s)	370, 373
TfiI	GAWTC	2 cut(s)	184, 275
TscAI	CASTG	1 cut(s)	102
TspDTI	ATGAA	4 cut(s)	155, 242, 332, 532
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	528
XapI	RAATTY	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	147, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.