Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007839

Physical Location & Seq

Genomic Coordinates Forward (+)

60577384 .. 60579402

Gene Structure 2019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCTTTTCAGGACCTTCAGAAAGGACTGGATCTTGGTTTGGTATCTCCAGAGGTATTACAGAACTTCTTTGATCTGCAGCAATATCCTCTTGTTTCGGAACTTACTCAACGGTTCCAGGTCAGTGCAGGGTTTCAGGGAAAGATTGTTGGTAGATCCCAAATTCTTGCATAGATTAGCTATAGAAGAATCTATATCAATAACTACTACTCTAATAGCACAATATGAGAGGCGTAAAGAAAATTTCTTTGAGGAGCTGGACTACGTGATTACGGATACTTTAAGGGGGATTGTTGTTGATTTCTTTACAGTGTGGCTTCCTGCTCCGACGTTGTCGTTCCTTTCATATGCTGATGAAATGAATGCGCCTGATAGCATGGATGCTATTAAAGGTCTCCTTGGGTCCATTCCAGACAATGCGTTTCAGAAGAGTCTTGTGGGGCAGGATTGGAGTATCAATCATAGACTTGCATCTGTGCTTTTGGGTGGTCTAAAACTAGCTAGTGTTGGATTTATTTCCAGTATCGGGGCTGTTGCTTCCTCAAATTGTCTGTTTGCAGTTCGCAAATTCATCAATCCAGCTCTGGTTACTAATCAGCAAAAGAAAAGAACTCCAATACTCAAAACAGCAATAATCTATGGAGGCTTTCTCGGAACTTCCGCAAATCTCCGTTATCAGATTATTGCTGGACTAGTGGAGCATCGACTTTCTGATGAATTTTCTTCTCAAACAATACTTGTAAATATGCTGTCTTTTCTTTCTCGGACAATAAACTCTTATTGGGGAACTCAGCAATGGATTGATCTTGCTCGCTTCACTGGACTGCAAGCTTCGAAGAGTGAACCTTCCATTTACCAAACACCGGATTCTACTATCCTGGTTGCATTGGAATGTAACAACACAGAGGAAACAAGTGTAGACGATATACAAAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009741 GO:0009987 GO:0010033 GO:0014070 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cofac_haem_bdg RETICULATA-like

Protein Analysis

312

Amino Acids

35.35

Weight (kDa)

8.36

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RETICULATA-like	PF11891	47 - 231	1.1e-61	Protein RETICULATA-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40400 AT2G40400 AT2G40400 AT3G56140 AT3G56140 AT3G56140
fragaria_vesca	FvH4_7g25380 FvH4_7g25380 FvH4_7g25380
malus_domestica	MD01G1160000.v1.1
prunus_persica	Prupe.2G258000_v2.0.a1
pyrus_communis	pycom01g17640
rosa_chinensis	RchiOBHm_Chr1g0371311 RchiOBHm_Chr1g0371331
rosa_laevigata	RLG00000026971
rosa_multiflora	Rmu_co8326835.1_g000001 Rmu_sc0000809.1_g000039
rosa_roxburghii	Rroxscaffold_4G00285790
rosa_rugosa	Rorug01G0363100
rosa_samantha	Rh1AG373000 Rh1BG336500 Rh1CG349900 Rh1DG367600
rosa_wichuraiana	Rw1G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	918
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	2 cut(s)	38, 149
AcsI	RAATTY	4 cut(s)	161, 241, 566, 716
AfiI	CCNNNNNNNGG	2 cut(s)	525, 862
AhlI	ACTAGT	1 cut(s)	691
AjnI	CCWGG	2 cut(s)	116, 876
AluBI	AGCT	5 cut(s)	179, 256, 500, 581, 830
AluI	AGCT	5 cut(s)	179, 256, 500, 581, 830
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	38, 149
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	4 cut(s)	161, 241, 566, 716
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	12, 402
AsuII	TTCGAA	1 cut(s)	833
AvaII	GGWCC	2 cut(s)	12, 402
BbvI	GCAGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	118, 878
BciVI	GTATCC	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	398
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	3 cut(s)	497, 501, 692
BfmI	CTRYAG	2 cut(s)	76, 180
BfuI	GTATCC	1 cut(s)	268
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	118, 878
Bme18I	GGWCC	2 cut(s)	12, 402
BmgT120I	GGNCC	2 cut(s)	12, 402
BmiI	GGNNCC	2 cut(s)	115, 403
BmrFI	CCNGG	2 cut(s)	118, 878
BmsI	GCATC	3 cut(s)	370, 479, 709
BplI	GAGNNNNNCTC	2 cut(s)	633, 665
BpmI	CTGGAG	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	833
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 862
Bse1I	ACTGG	3 cut(s)	32, 519, 823
Bse3DI	GCAATG	1 cut(s)	800
BseBI	CCWGG	2 cut(s)	118, 878
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	525, 862
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	1 cut(s)	803
BseNI	ACTGG	3 cut(s)	32, 519, 823
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	863
BslI	CCNNNNNNNGG	2 cut(s)	525, 862
BsmAI	GTCTC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	367
Bso31I	GGTCTC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	833
Bsp143I	GATC	4 cut(s)	30, 72, 154, 802
BspACI	CCGC	1 cut(s)	660
BspCNI	CTCAG	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	115, 403
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	2 cut(s)	38, 149
BspT104I	TTCGAA	1 cut(s)	833
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	800
BsrI	ACTGG	3 cut(s)	32, 519, 823
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	4 cut(s)	30, 72, 154, 802
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	118, 878
Bst4CI	ACNGT	2 cut(s)	113, 310
Bst6I	CTCTTC	2 cut(s)	422, 830
BstBAI	YACGTR	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	811, 828
BstDEI	CTNAG	1 cut(s)	789
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	4 cut(s)	33, 75, 157, 805
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	30, 72, 154, 802
BstNI	CCWGG	2 cut(s)	118, 878
BstSCI	CCNGG	2 cut(s)	116, 876
BstSFI	CTRYAG	2 cut(s)	76, 180
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	2 cut(s)	30, 154
BstYI	RGATCY	2 cut(s)	30, 154
BsuI	GTATCC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	3 cut(s)	129, 315, 816
Cac8I	GCNNGC	2 cut(s)	811, 828
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	12, 402
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	8 cut(s)	179, 256, 316, 500, 530, 581, 645, 830
CviKI_1	RGCY	8 cut(s)	179, 256, 316, 500, 530, 581, 645, 830
DdeI	CTNAG	1 cut(s)	789
DpnI	GATC	4 cut(s)	32, 74, 156, 804
DpnII	GATC	4 cut(s)	30, 72, 154, 802
Eam1104I	CTCTTC	2 cut(s)	422, 830
EarI	CTCTTC	2 cut(s)	422, 830
Eco130I	CCWWGG	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	12, 402
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	116, 876
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	1 cut(s)	379
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	3 cut(s)	497, 501, 692
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	32
HapII	CCGG	1 cut(s)	863
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HindIII	AAGCTT	1 cut(s)	828
HinfI	GANTC	3 cut(s)	188, 430, 866
HpaII	CCGG	1 cut(s)	863
Hpy166II	GTNNAC	2 cut(s)	842, 919
Hpy188I	TCNGA	8 cut(s)	20, 99, 327, 426, 653, 678, 712, 765
Hpy188III	TCNNGA	3 cut(s)	10, 49, 410
Hpy8I	GTNNAC	2 cut(s)	842, 919
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	25, 855
HpyCH4III	ACNGT	2 cut(s)	113, 310
HpyCH4IV	ACGT	2 cut(s)	264, 329
HpyCH4V	TGCA	7 cut(s)	78, 127, 169, 470, 557, 826, 884
HpyF3I	CTNAG	1 cut(s)	789
HpySE526I	ACGT	2 cut(s)	264, 329
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	4 cut(s)	30, 72, 154, 802
LmnI	GCTCC	3 cut(s)	253, 328, 697
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	3 cut(s)	370, 479, 709
MaeI	CTAG	3 cut(s)	497, 501, 692
MaeII	ACGT	2 cut(s)	264, 329
MaeIII	GTNAC	2 cut(s)	586, 893
MalI	GATC	4 cut(s)	32, 74, 156, 804
MboI	GATC	4 cut(s)	30, 72, 154, 802
MboII	GAAGA	4 cut(s)	197, 439, 714, 847
MflI	RGATCY	2 cut(s)	30, 154
MluCI	AATT	5 cut(s)	161, 241, 544, 566, 716
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	2 cut(s)	350, 487
MnlI	CCTC	7 cut(s)	45, 98, 222, 244, 550, 635, 898
MseI	TTAA	2 cut(s)	281, 387
MslI	CAYNNNNRTG	1 cut(s)	889
MspI	CCGG	1 cut(s)	863
MspR9I	CCNGG	2 cut(s)	118, 878
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	118, 878
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	4 cut(s)	30, 72, 154, 802
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	115, 403
NspV	TTCGAA	1 cut(s)	833
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	188, 866
PflFI	GACNNNGTC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
Ppu21I	YACGTR	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	116, 876
PspGI	CCWGG	2 cut(s)	116, 876
PspN4I	GGNNCC	2 cut(s)	115, 403
PspPI	GGNCC	2 cut(s)	12, 402
PspPPI	RGGWCCY	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	30, 154
PsyI	GACNNNGTC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	889
SaqAI	TTAA	2 cut(s)	281, 387
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	4 cut(s)	30, 72, 154, 802
Sau96I	GGNCC	2 cut(s)	12, 402
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	2 cut(s)	118, 878
SfaNI	GCATC	3 cut(s)	370, 479, 709
SfcI	CTRYAG	2 cut(s)	76, 180
SfuI	TTCGAA	1 cut(s)	833
SinI	GGWCC	2 cut(s)	12, 402
SmiMI	CAYNNNNRTG	1 cut(s)	889
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	5 cut(s)	161, 241, 544, 566, 716
SsiI	CCGC	1 cut(s)	660
SspMI	CTAG	3 cut(s)	497, 501, 692
StyD4I	CCNGG	2 cut(s)	116, 876
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	113, 310
TaiI	ACGT	2 cut(s)	267, 332
TaqI	TCGA	2 cut(s)	703, 833
TasI	AATT	5 cut(s)	161, 241, 544, 566, 716
TfiI	GAWTC	2 cut(s)	188, 866
Tru1I	TTAA	2 cut(s)	281, 387
Tru9I	TTAA	2 cut(s)	281, 387
TscAI	CASTG	3 cut(s)	129, 315, 823
TseI	GCWGC	1 cut(s)	78
TspDTI	ATGAA	5 cut(s)	333, 369, 374, 559, 729
TspGWI	ACGGA	2 cut(s)	287, 659
TspRI	CASTG	3 cut(s)	129, 315, 823
Tth111I	GACNNNGTC	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	12, 402
XapI	RAATTY	4 cut(s)	161, 241, 566, 716
XmiI	GTMKAC	1 cut(s)	918
XspI	CTAG	3 cut(s)	497, 501, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.