Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007839

Physical Location & Seq

Genomic Coordinates Forward (+)

47841953 .. 47843002

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0363100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAGGCAGGGGAGAGGCAACCCGAATTTCTCAAGCCCAGAAGCACAACCAGACTTTGCCAAAGGGGAGAAGTCAATTTGGGCTGGGTTTACATAACTGGTTACACGGCCGGCACAGCCGATAGGGTTCAGCAGCTCCCAATTCCAGTCTTGGAGTATGAGGTCGAGAAAAACAGCATTGTCGTGGTGAATTCAAGGTTGTTTTTGATCGGCGGACAACTTGCTCCCAACAACGACATGGATGATGATCCATCCGAAGTGGGTGTGTCGTTTTTGGATCTGAATCAACTAGAGGAGGAGGCTTGGAGAGTCGCGGCCAGGTTCGCAGCGGGACAACAGGACCACGCGTTGGCCTACAGCGATGGTTGGATATACTCCGTCGGTCACATCAGTGGGCGTTTTCACTCCCAAACCTTCCAATGGGAGCCGTCTCGTAACCTTGCGAAAGAGTTCAATATAAGTCTTCTGGGAGCTTCAAGAATTGTGCAATATGCCAATGTGCAGTATGTCAATCTGCAGGGGATCGAGGGCAGAGTTAACGCGATGTGTCACTGTCGTGAGGGAATGCAACATTTGGAGATATGTGGAACATTGGCTCACGAATATAAAGGTTATTGGTATCCCAGAGTAGTGGTGGGCAGGCACCTCATATGTGTGAATAATGCCCACCCTATCACGGGAGCTTATAGCTGTAGGATGCTTTATGTGTATGACACTGGACGGATGCGGTGGATGCAGCGTCCGGTGCAGGGCCTGGTCATGAACAATTACATGCTTCCATTCCAGAGGGAACAAGATGTTGGGATGACGGCTTTGATAAAAGTCGGTCCTCATCGGTATGCACTCGTGTGGTCTCGCGAGTGCACCGTTGAGGACTCTCAATTTGAAATTCATTGGTGTAAGTTTGATCTTCGACTGCATCACGGAGTCATTGAAGGAAAAACTGTATTGGATGATTACTTCTCAGCCGTAAGAGTGGCACATGGGATGTGTATGTTTGAAGATGTTGGATTTGACACAACCTTGCTTAACATCACCTCTGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009741 GO:0009987 GO:0010033 GO:0014070 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cofac_haem_bdg RETICULATA-like

Protein Analysis

349

Amino Acids

39.83

Weight (kDa)

5.9

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40400 AT2G40400 AT2G40400 AT3G56140 AT3G56140 AT3G56140
fragaria_vesca	FvH4_7g25380 FvH4_7g25380 FvH4_7g25380
malus_domestica	MD01G1160000.v1.1
prunus_persica	Prupe.2G258000_v2.0.a1
pyrus_communis	pycom01g17640
rosa_chinensis	RchiOBHm_Chr1g0371311 RchiOBHm_Chr1g0371331
rosa_laevigata	RLG00000026971
rosa_multiflora	Rmu_co8326835.1_g000001 Rmu_sc0000809.1_g000039
rosa_roxburghii	Rroxscaffold_4G00285790
rosa_rugosa	Rorug01G0363100
rosa_samantha	Rh1AG373000 Rh1BG336500 Rh1CG349900 Rh1DG367600
rosa_wichuraiana	Rw1G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	4 cut(s)	314, 347, 542, 858
AciI	CCGC	4 cut(s)	213, 314, 329, 727
AclWI	GGATC	3 cut(s)	242, 285, 530
AcoI	YGGCCR	2 cut(s)	108, 315
AcsI	RAATTY	3 cut(s)	26, 190, 888
AfiI	CCNNNNNNNGG	5 cut(s)	349, 420, 676, 677, 749
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	6 cut(s)	195, 454, 477, 887, 935, 1001
AjnI	CCWGG	2 cut(s)	317, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	783, 815
AleI	CACNNNNGTG	3 cut(s)	390, 555, 847
AluBI	AGCT	4 cut(s)	136, 473, 683, 690
AluI	AGCT	4 cut(s)	136, 473, 683, 690
Alw21I	GWGCWC	1 cut(s)	866
Alw26I	GTCTC	2 cut(s)	435, 858
Alw44I	GTGCAC	1 cut(s)	862
AlwI	GGATC	3 cut(s)	242, 285, 530
AlwNI	CAGNNNCTG	1 cut(s)	754
AoxI	GGCC	4 cut(s)	108, 315, 351, 751
ApaLI	GTGCAC	1 cut(s)	862
ApeKI	GCWGC	3 cut(s)	133, 326, 736
ApoI	RAATTY	3 cut(s)	26, 190, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	3 cut(s)	340, 751, 827
AsuHPI	GGTGA	2 cut(s)	199, 1027
AvaII	GGWCC	2 cut(s)	340, 827
BaeGI	GKGCMC	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	642
BauI	CACGAG	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	866
BbvI	GCAGC	3 cut(s)	145, 338, 748
BccI	CCATC	2 cut(s)	259, 356
BceAI	ACGGC	4 cut(s)	123, 412, 825, 953
BciT130I	CCWGG	2 cut(s)	319, 755
BciVI	GTATCC	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	435, 858
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	3 cut(s)	355, 515, 691
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	4 cut(s)	134, 315, 327, 737
BlsI	GCNGC	4 cut(s)	135, 316, 328, 738
Bme1390I	CCNGG	2 cut(s)	319, 755
Bme18I	GGWCC	2 cut(s)	340, 827
BmgT120I	GGNCC	3 cut(s)	340, 751, 827
BmiI	GGNNCC	2 cut(s)	426, 644
BmrFI	CCNGG	2 cut(s)	319, 755
BmsI	GCATC	4 cut(s)	687, 714, 723, 928
BpiI	GAAGAC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	17
BsaBI	GATNNNNATC	2 cut(s)	246, 282
BsaI	GGTCTC	1 cut(s)	858
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	5 cut(s)	349, 420, 676, 677, 749
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	103, 146, 721
Bse8I	GATNNNNATC	2 cut(s)	246, 282
BseBI	CCWGG	2 cut(s)	319, 755
BseGI	GGATG	8 cut(s)	247, 251, 702, 729, 738, 810, 958, 993
BseJI	GATNNNNATC	2 cut(s)	246, 282
BseLI	CCNNNNNNNGG	5 cut(s)	349, 420, 676, 677, 749
BseMII	CTCAG	1 cut(s)	978
BseNI	ACTGG	3 cut(s)	103, 146, 721
BseRI	GAGGAG	2 cut(s)	308, 311
BseSI	GKGCMC	1 cut(s)	866
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	3 cut(s)	145, 338, 748
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	2 cut(s)	521, 767
Bsh1236I	CGCG	4 cut(s)	314, 347, 542, 858
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	110, 317, 353, 753
BshNI	GGYRCC	1 cut(s)	642
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	866
BsiSI	CCGG	2 cut(s)	111, 743
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	5 cut(s)	349, 420, 676, 677, 749
BsmAI	GTCTC	2 cut(s)	435, 858
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	4 cut(s)	110, 317, 353, 753
Bso31I	GGTCTC	1 cut(s)	858
Bsp1286I	GDGCHC	1 cut(s)	866
Bsp143I	GATC	5 cut(s)	207, 247, 277, 522, 907
Bsp68I	TCGCGA	1 cut(s)	858
BspACI	CCGC	4 cut(s)	213, 314, 329, 727
BspANI	GGCC	4 cut(s)	110, 317, 353, 753
BspCNI	CTCAG	1 cut(s)	977
BspFNI	CGCG	4 cut(s)	314, 347, 542, 858
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	2 cut(s)	426, 644
BspMAI	CTGCAG	1 cut(s)	519
BspPI	GGATC	3 cut(s)	242, 285, 530
BspT107I	GGYRCC	1 cut(s)	642
BspTNI	GGTCTC	1 cut(s)	858
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	103, 146, 721
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	5 cut(s)	207, 247, 277, 522, 907
BssSI	CACGAG	1 cut(s)	845
Bst2BI	CACGAG	1 cut(s)	845
Bst2UI	CCWGG	2 cut(s)	319, 755
Bst4CI	ACNGT	3 cut(s)	554, 868, 946
BstC8I	GCNNGC	3 cut(s)	6, 112, 641
BstDEI	CTNAG	1 cut(s)	964
BstF5I	GGATG	8 cut(s)	247, 251, 702, 729, 738, 810, 958, 993
BstFNI	CGCG	4 cut(s)	314, 347, 542, 858
BstKTI	GATC	5 cut(s)	210, 250, 280, 525, 910
BstMAI	GTCTC	2 cut(s)	435, 858
BstMBI	GATC	5 cut(s)	207, 247, 277, 522, 907
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 323, 733, 745
BstNI	CCWGG	2 cut(s)	319, 755
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	2 cut(s)	317, 753
BstSFI	CTRYAG	3 cut(s)	355, 515, 691
BstSLI	GKGCMC	1 cut(s)	866
BstUI	CGCG	4 cut(s)	314, 347, 542, 858
BstV1I	GCAGC	3 cut(s)	145, 338, 748
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	110, 317, 353, 753
BtgZI	GCGATG	2 cut(s)	375, 557
BtsCI	GGATG	8 cut(s)	247, 251, 702, 729, 738, 810, 958, 993
BtsIMutI	CAGTG	3 cut(s)	397, 550, 714
BtuMI	TCGCGA	1 cut(s)	858
Cac8I	GCNNGC	3 cut(s)	6, 112, 641
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	759
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	340, 751, 827
CseI	GACGC	1 cut(s)	728
CviAII	CATG	4 cut(s)	238, 760, 772, 983
DdeI	CTNAG	1 cut(s)	964
DpnI	GATC	5 cut(s)	209, 249, 279, 524, 909
DpnII	GATC	5 cut(s)	207, 247, 277, 522, 907
EaeI	YGGCCR	2 cut(s)	108, 315
EagI	CGGCCG	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	858
Eco47I	GGWCC	2 cut(s)	340, 827
Eco52I	CGGCCG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	317, 753
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	4 cut(s)	241, 763, 775, 986
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	237, 759, 771, 982
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	650
Fnu4HI	GCNGC	4 cut(s)	134, 315, 327, 737
FokI	GGATG	8 cut(s)	238, 254, 709, 736, 745, 817, 965, 1000
Fsp4HI	GCNGC	4 cut(s)	134, 315, 327, 737
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	4 cut(s)	134, 315, 327, 737
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	4 cut(s)	110, 317, 353, 753
HapII	CCGG	2 cut(s)	111, 743
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	4 cut(s)	241, 763, 775, 986
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	4 cut(s)	283, 309, 875, 927
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	2 cut(s)	111, 743
HphI	GGTGA	2 cut(s)	199, 1027
Hpy166II	GTNNAC	3 cut(s)	91, 538, 864
Hpy188I	TCNGA	3 cut(s)	256, 282, 1042
Hpy188III	TCNNGA	7 cut(s)	166, 477, 557, 599, 760, 784, 857
Hpy8I	GTNNAC	3 cut(s)	91, 538, 864
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	424, 929
HpyCH4III	ACNGT	3 cut(s)	554, 868, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 323, 733, 745
HpyF3I	CTNAG	1 cut(s)	964
Hsp92II	CATG	4 cut(s)	241, 763, 775, 986
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	207, 247, 277, 522, 907
LmnI	GCTCC	5 cut(s)	141, 229, 424, 470, 680
Lsp1109I	GCAGC	3 cut(s)	145, 338, 748
LweI	GCATC	4 cut(s)	687, 714, 723, 928
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	4 cut(s)	101, 383, 434, 548
MalI	GATC	5 cut(s)	209, 249, 279, 524, 909
MboI	GATC	5 cut(s)	207, 247, 277, 522, 907
MboII	GAAGA	3 cut(s)	455, 902, 1013
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	866
MluCI	AATT	8 cut(s)	26, 76, 141, 190, 480, 766, 881, 888
MluI	ACGCGT	1 cut(s)	345
MlyI	GAGTC	3 cut(s)	318, 869, 936
MmeI	TCCRAC	2 cut(s)	347, 988
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	537, 1029
MslI	CAYNNNNRTG	6 cut(s)	182, 390, 555, 653, 837, 847
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	111, 743
MspR9I	CCNGG	2 cut(s)	319, 755
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	2 cut(s)	319, 755
MvnI	CGCG	4 cut(s)	314, 347, 542, 858
MwoI	GCNNNNNNNGC	4 cut(s)	116, 323, 733, 745
NaeI	GCCGGC	1 cut(s)	112
NdeI	CATATG	1 cut(s)	650
NdeII	GATC	5 cut(s)	207, 247, 277, 522, 907
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	241, 763, 775, 986
NlaIV	GGNNCC	2 cut(s)	426, 644
NmuCI	GTSAC	2 cut(s)	383, 548
NruI	TCGCGA	1 cut(s)	858
NspI	RCATGY	1 cut(s)	775
OliI	CACNNNNGTG	3 cut(s)	390, 555, 847
PagI	TCATGA	1 cut(s)	759
PctI	GAATGC	1 cut(s)	570
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	135, 316, 328, 738
PleI	GAGTC	3 cut(s)	317, 869, 935
PpsI	GAGTC	3 cut(s)	317, 869, 935
Psp6I	CCWGG	2 cut(s)	317, 753
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	2 cut(s)	317, 753
PspN4I	GGNNCC	2 cut(s)	426, 644
PspPI	GGNCC	3 cut(s)	340, 751, 827
PstI	CTGCAG	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	858
RseI	CAYNNNNRTG	6 cut(s)	182, 390, 555, 653, 837, 847
SaqAI	TTAA	2 cut(s)	537, 1029
SatI	GCNGC	4 cut(s)	134, 315, 327, 737
Sau3AI	GATC	5 cut(s)	207, 247, 277, 522, 907
Sau96I	GGNCC	3 cut(s)	340, 751, 827
SchI	GAGTC	3 cut(s)	318, 869, 936
ScrFI	CCNGG	2 cut(s)	319, 755
SduI	GDGCHC	1 cut(s)	866
SfaNI	GCATC	4 cut(s)	687, 714, 723, 928
SfcI	CTRYAG	3 cut(s)	355, 515, 691
SinI	GGWCC	2 cut(s)	340, 827
SmiMI	CAYNNNNRTG	6 cut(s)	182, 390, 555, 653, 837, 847
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	8 cut(s)	26, 76, 141, 190, 480, 766, 881, 888
SsiI	CCGC	4 cut(s)	213, 314, 329, 727
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	317, 753
TaaI	ACNGT	3 cut(s)	554, 868, 946
TaqI	TCGA	3 cut(s)	165, 525, 913
TaqII	GACCGA	2 cut(s)	371, 815
TasI	AATT	8 cut(s)	26, 76, 141, 190, 480, 766, 881, 888
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	537, 1029
Tru9I	TTAA	2 cut(s)	537, 1029
TscAI	CASTG	3 cut(s)	397, 557, 721
TseFI	GTSAC	2 cut(s)	383, 548
TseI	GCWGC	3 cut(s)	133, 326, 736
Tsp45I	GTSAC	2 cut(s)	383, 548
TspDTI	ATGAA	2 cut(s)	776, 881
TspGWI	ACGGA	3 cut(s)	367, 736, 939
TspRI	CASTG	3 cut(s)	397, 557, 721
Van91I	CCANNNNNTGG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	862
VpaK11BI	GGWCC	2 cut(s)	340, 827
XapI	RAATTY	3 cut(s)	26, 190, 888
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	2 cut(s)	235, 631
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.