Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014035

Physical Location & Seq

Genomic Coordinates Reverse (-)

27188479 .. 27190109

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1167300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGGATGAAGTCCCTTTTCCTCCTCAGATCACAACCACCAAGCCATTATCTCTGCTGGGTCAAGGAATTACCGACATTGAGATTCACTTTCTTCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAAGTTGTGTCACACCTTCAACAGTGGAAGGCCAAAAAGGCAGATGAACTTGCAGAAGATGATGACTTCTTTGATGCTCTTATTTCTGGTGAACTTGAGAGTGCAGTGAGGGACAGATTGGCAGCTGATGACAAATATGAGGAAGAGGAGGAGGAGGCCTTGGAAAAAGTTGTTGAGTTCTTCCAATCAAAGTACTTCAAGAAGGATTCCGTCATCACATTCCATTTCCCAGCAACTTCTGCCGCGGCCGAGATCGTGTTTAGCACCGAAGGGAAGGAAGAGTCGAAACTCAAAGTGGAGAATGCAAATGTGGTGGAGAACATCAAGAAATGGTATTTGGGTGGGACAAGAGGGGTGTCTCCTTCGACCATCTCCTCCCTGGCCAACGCACTCTCAGCTGAACTGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

183

Amino Acids

20.28

Weight (kDa)

4.58

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	2 - 82	8.1e-15	Chalcone-flavanone isomerase
Chalcone	PF02431	85 - 178	9.4e-07	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05270 AT5G05270
fragaria_vesca	FvH4_7g25890 FvH4_7g25890
malus_domestica	MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica	Prupe.2G263900_v2.0.a1
pyrus_communis	pycom01g18040
rosa_laevigata	RLG00000026916
rosa_multiflora	Rmu_sc0001755.1_g000020
rosa_roxburghii	Rroxscaffold_4G00285160
rosa_rugosa	Rorug01G0370200
rosa_samantha	Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana	Rw1G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	380
AciI	CCGC	2 cut(s)	378, 380
AcoI	YGGCCR	2 cut(s)	381, 516
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	98, 155, 334
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	2 cut(s)	260, 533
AluI	AGCT	2 cut(s)	260, 533
Alw26I	GTCTC	1 cut(s)	498
AoxI	GGCC	4 cut(s)	165, 291, 381, 516
ApeKI	GCWGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	498
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	258, 378, 381
BlsI	GCNGC	3 cut(s)	259, 379, 382
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	294, 378, 513
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	294, 378, 513
BseGI	GGATG	1 cut(s)	13
BseMII	CTCAG	3 cut(s)	41, 530, 543
BseRI	GAGGAG	5 cut(s)	15, 296, 299, 302, 499
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	269
BseYI	CCCAGC	2 cut(s)	58, 364
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	167, 293, 383, 518
BsiEI	CGRYCG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	260, 493
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	2 cut(s)	260, 493
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	167, 293, 383, 518
Bsp143I	GATC	2 cut(s)	30, 387
BspACI	CCGC	2 cut(s)	378, 380
BspANI	GGCC	4 cut(s)	167, 293, 383, 518
BspCNI	CTCAG	3 cut(s)	40, 531, 542
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	294, 378, 513
BssMI	GATC	2 cut(s)	30, 387
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	2 cut(s)	273, 408
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	27, 529, 539
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	2 cut(s)	33, 390
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	2 cut(s)	30, 387
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 374, 530
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	269
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	167, 293, 383, 518
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	164, 246
Cfr13I	GGNCC	1 cut(s)	130
Cfr42I	CCGCGG	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviJI	RGCY	7 cut(s)	46, 167, 260, 293, 383, 518, 533
CviKI_1	RGCY	7 cut(s)	46, 167, 260, 293, 383, 518, 533
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	27, 529, 539
DpnI	GATC	2 cut(s)	32, 389
DpnII	GATC	2 cut(s)	30, 387
EaeI	YGGCCR	2 cut(s)	381, 516
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	273, 408
EarI	CTCTTC	2 cut(s)	273, 408
EclXI	CGGCCG	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaiI	YATR	1 cut(s)	273
FaqI	GGGAC	2 cut(s)	260, 493
Fnu4HI	GCNGC	3 cut(s)	258, 378, 381
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	258, 378, 381
GluI	GCNGC	3 cut(s)	258, 378, 381
GsaI	CCCAGC	2 cut(s)	62, 368
HaeIII	GGCC	4 cut(s)	167, 293, 383, 518
HinfI	GANTC	3 cut(s)	85, 341, 416
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	108, 124, 227
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	334, 460
Hpy8I	GTNNAC	3 cut(s)	108, 124, 227
HpyAV	CCTTC	6 cut(s)	157, 161, 331, 398, 403, 507
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	188, 239, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 374, 530
HpyF3I	CTNAG	3 cut(s)	27, 529, 539
KspI	CCGCGG	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	30, 387
LpnPI	CCDG	6 cut(s)	44, 147, 207, 378, 500, 527
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	2 cut(s)	32, 389
MboI	GATC	2 cut(s)	30, 387
MboII	GAAGA	5 cut(s)	86, 203, 290, 307, 425
MfeI	CAATTG	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	2 cut(s)	69, 114
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	425
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	3 cut(s)	260, 380, 533
MspR9I	CCNGG	1 cut(s)	515
MunI	CAATTG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	173, 374, 530
NdeII	GATC	2 cut(s)	30, 387
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	85, 341
PkrI	GCNGC	3 cut(s)	259, 379, 382
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	2 cut(s)	58, 364
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	130
PvuII	CAGCTG	2 cut(s)	260, 533
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacII	CCGCGG	1 cut(s)	381
SatI	GCNGC	3 cut(s)	258, 378, 381
Sau3AI	GATC	2 cut(s)	30, 387
Sau96I	GGNCC	1 cut(s)	130
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	3 cut(s)	153, 262, 535
SfaNI	GCATC	1 cut(s)	199
Sfr303I	CCGCGG	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	69, 114
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	378, 380
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	419, 500
TasI	AATT	2 cut(s)	69, 114
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	2 cut(s)	380, 383
TfiI	GAWTC	2 cut(s)	85, 341
TscAI	CASTG	2 cut(s)	164, 246
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	24, 195
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	2 cut(s)	164, 246
VpaK11BI	GGWCC	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.