Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014035

Physical Location & Seq

Genomic Coordinates Reverse (-)

61059863 .. 61062202

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGTGCAGTGAGTGCAGAAGTAGTGTTGGTGGATGAAATCCCTTTTCCTTCAGTGATCACAACCTCCAAGCCATTAGCTCTTCTGGGTCATGGGATCACAGACATTGAGATACACTTTCTGCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAGATTGTTGGACATTTGCAGAAATGGAAGACCAAGAAAGGAACTGAGCTTGCAGAAGATGATGACTTCTTTGATGCTCTTATTTCTGCTCCTGTTGAGAAATTTCTAAGAGTTGTGGTGATCAAGGAGATCAAAGGGTCTCAATATGGGGTGCAGCTTGAGAGTTCAGTGAGGGATAGGTTGGCAGCTGATGACAAATATGAGGAAGAGGAGGAGGAAGCCTTGGAGAAGATTGTTGACTTCTTCCAATCAAAATATTTTAAGAAGGATTCCATCATCACATTTCATTTTCCAGCTACTTCCCCTACAGCTGAGGTAAGAATGATCAAACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

165

Amino Acids

18.63

Weight (kDa)

4.96

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	11 - 152	6.4e-28	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05270 AT5G05270
fragaria_vesca	FvH4_7g25890 FvH4_7g25890
malus_domestica	MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica	Prupe.2G263900_v2.0.a1
pyrus_communis	pycom01g18040
rosa_laevigata	RLG00000026916
rosa_multiflora	Rmu_sc0001755.1_g000020
rosa_roxburghii	Rroxscaffold_4G00285160
rosa_rugosa	Rorug01G0370200
rosa_samantha	Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana	Rw1G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	36
AluBI	AGCT	6 cut(s)	80, 211, 319, 350, 458, 473
AluI	AGCT	6 cut(s)	80, 211, 319, 350, 458, 473
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	316, 347
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	197
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	328, 359
BccI	CCATC	1 cut(s)	443
BclI	TGATCA	3 cut(s)	57, 282, 486
BcoDI	GTCTC	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	468
BisI	GCNGC	2 cut(s)	317, 348
BlsI	GCNGC	2 cut(s)	318, 349
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	153, 198, 465
BseRI	GAGGAG	2 cut(s)	386, 389
BseXI	GCAGC	2 cut(s)	328, 359
BsgI	GTGCAG	3 cut(s)	27, 36, 335
BsmAI	GTCTC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	5 cut(s)	57, 96, 282, 291, 486
BspCNI	CTCAG	3 cut(s)	154, 199, 466
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	104
BspQI	GCTCTTC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	5 cut(s)	57, 96, 282, 291, 486
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	2 cut(s)	87, 363
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	162, 207, 269, 474
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	5 cut(s)	60, 99, 285, 294, 489
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	5 cut(s)	57, 96, 282, 291, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	328, 359
BstV2I	GAAGAC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	3 cut(s)	15, 60, 336
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	157
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	8 cut(s)	73, 80, 211, 319, 350, 383, 458, 473
CviKI_1	RGCY	8 cut(s)	73, 80, 211, 319, 350, 383, 458, 473
DdeI	CTNAG	4 cut(s)	162, 207, 269, 474
DpnI	GATC	5 cut(s)	59, 98, 284, 293, 488
DpnII	GATC	5 cut(s)	57, 96, 282, 291, 486
Eam1104I	CTCTTC	2 cut(s)	87, 363
EarI	CTCTTC	2 cut(s)	87, 363
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	95
FaiI	YATR	3 cut(s)	93, 309, 363
FatI	CATG	1 cut(s)	91
FbaI	TGATCA	3 cut(s)	57, 282, 486
Fnu4HI	GCNGC	2 cut(s)	317, 348
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	317, 348
GluI	GCNGC	2 cut(s)	317, 348
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	1 cut(s)	431
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	3 cut(s)	135, 151, 400
Hpy8I	GTNNAC	3 cut(s)	135, 151, 400
HpyAV	CCTTC	2 cut(s)	60, 421
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4V	TGCA	6 cut(s)	8, 17, 124, 181, 215, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	4 cut(s)	162, 207, 269, 474
Hsp92II	CATG	1 cut(s)	95
Ksp22I	TGATCA	3 cut(s)	57, 282, 486
Kzo9I	GATC	5 cut(s)	57, 96, 282, 291, 486
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	71, 174, 267, 468
Lsp1109I	GCAGC	2 cut(s)	328, 359
LweI	GCATC	1 cut(s)	226
MalI	GATC	5 cut(s)	59, 98, 284, 293, 488
MboI	GATC	5 cut(s)	57, 96, 282, 291, 486
MboII	GAAGA	6 cut(s)	74, 202, 230, 380, 397, 403
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	2 cut(s)	141, 263
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	76, 327, 358, 364, 367, 370, 469
MseI	TTAA	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	350, 473
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	5 cut(s)	57, 96, 282, 291, 486
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	318, 349
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	157
PvuII	CAGCTG	2 cut(s)	350, 473
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	317, 348
Sau3AI	GATC	5 cut(s)	57, 96, 282, 291, 486
Sau96I	GGNCC	1 cut(s)	157
SetI	ASST	9 cut(s)	68, 82, 213, 321, 344, 352, 460, 475, 480
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	141, 263
SspI	AATATT	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	495
TasI	AATT	2 cut(s)	141, 263
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	3 cut(s)	15, 60, 336
TseI	GCWGC	2 cut(s)	316, 347
TspDTI	ATGAA	2 cut(s)	51, 437
TspRI	CASTG	3 cut(s)	15, 60, 336
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.