Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014035

Physical Location & Seq

Genomic Coordinates Reverse (-)

47557043 .. 47558252

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG342000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTTCATCTTGTTCATGGGTGCAGTGAGTGCAGAAGTAGTGTTGGTGGATGAAATCCCTTTTCCTTCGGTGATCACAACCTCCAAGCCATTAGCTCTTCTGGGTCATGGGATCACAGACATTGAGATACACTTTCTGCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAGATTGTTGGACATCTGCAGAAATGGAAGACCAAGAAAGGAACTGAGCTTGCAGAAGATGATGACTTCTTTGATGCTCTTATTTCTGCTCCTGTTGAGAAATTTCTAAGAGTTGTGGTGATCAAGGAGATCAAAGGGTCTCAATATGGGGTGCAGCTTGAGAGTTCGGTGAGGGATAGGTTGGCAGCTGATGACAAATATGAGGAAGAGGAGGAGGAAGCCTTGGAGAAGATTGTTGAGTTCTTCCAATCAAAATATTTTAAGAAGGATTCCATCATCACATTTCATTTTCCAGCTACTTCCCCTACAGCTGAGATTGTGTTTACTGCTGAAGGGAAGGAGGAGTCGAAGATCAAAGTGGAAAATGCCAATGTTGTCGAGACGATCCAGAAATGGTATTTGGGTGGAACAAGAGGGGTTTCTCCTTCAACCATATCTTCCTTGGCTAACACACTCTCTGCTGAATTGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

217

Amino Acids

24.19

Weight (kDa)

4.86

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	16 - 213	1.7e-33	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05270 AT5G05270
fragaria_vesca	FvH4_7g25890 FvH4_7g25890
malus_domestica	MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica	Prupe.2G263900_v2.0.a1
pyrus_communis	pycom01g18040
rosa_laevigata	RLG00000026916
rosa_multiflora	Rmu_sc0001755.1_g000020
rosa_roxburghii	Rroxscaffold_4G00285160
rosa_rugosa	Rorug01G0370200
rosa_samantha	Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana	Rw1G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	119, 556
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	528
AgsI	TTSAA	1 cut(s)	606
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	6 cut(s)	95, 226, 334, 365, 473, 488
AluI	AGCT	6 cut(s)	95, 226, 334, 365, 473, 488
Alw26I	GTCTC	2 cut(s)	321, 551
AlwI	GGATC	2 cut(s)	119, 556
ApeKI	GCWGC	2 cut(s)	331, 362
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	82, 307, 358
AvaII	GGWCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	343, 374
BccI	CCATC	1 cut(s)	458
BclI	TGATCA	2 cut(s)	72, 297
BcoDI	GTCTC	2 cut(s)	321, 551
BfmI	CTRYAG	2 cut(s)	194, 483
BisI	GCNGC	2 cut(s)	332, 363
BlsI	GCNGC	2 cut(s)	333, 364
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	399, 618
BseDI	CCNNGG	2 cut(s)	399, 618
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	168, 213, 480
BseRI	GAGGAG	3 cut(s)	401, 404, 533
BseXI	GCAGC	2 cut(s)	343, 374
BsgI	GTGCAG	3 cut(s)	42, 51, 350
BsmAI	GTCTC	2 cut(s)	321, 551
BsmBI	CGTCTC	1 cut(s)	551
Bso31I	GGTCTC	1 cut(s)	321
Bsp143I	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
BspCNI	CTCAG	3 cut(s)	169, 214, 481
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	198
BspPI	GGATC	2 cut(s)	119, 556
BspQI	GCTCTTC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	399, 618
BssMI	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
BssT1I	CCWWGG	2 cut(s)	399, 618
Bst6I	CTCTTC	2 cut(s)	102, 378
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	177, 222, 284, 489
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	6 cut(s)	75, 114, 300, 309, 531, 564
BstMAI	GTCTC	2 cut(s)	321, 551
BstMBI	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	194, 483
BstV1I	GCAGC	2 cut(s)	343, 374
BstV2I	GAAGAC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	172
CviAII	CATG	2 cut(s)	16, 107
CviJI	RGCY	9 cut(s)	88, 95, 226, 334, 365, 398, 473, 488, 623
CviKI_1	RGCY	9 cut(s)	88, 95, 226, 334, 365, 398, 473, 488, 623
DdeI	CTNAG	4 cut(s)	177, 222, 284, 489
DpnI	GATC	6 cut(s)	74, 113, 299, 308, 530, 563
DpnII	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
Eam1104I	CTCTTC	2 cut(s)	102, 378
EarI	CTCTTC	2 cut(s)	102, 378
Eco130I	CCWWGG	2 cut(s)	399, 618
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	528
EcoT14I	CCWWGG	2 cut(s)	399, 618
ErhI	CCWWGG	2 cut(s)	399, 618
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	2 cut(s)	19, 110
FaiI	YATR	5 cut(s)	17, 108, 324, 378, 611
FatI	CATG	2 cut(s)	15, 106
FbaI	TGATCA	2 cut(s)	72, 297
Fnu4HI	GCNGC	2 cut(s)	332, 363
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	332, 363
GluI	GCNGC	2 cut(s)	332, 363
Hin1II	CATG	2 cut(s)	19, 110
HinfI	GANTC	2 cut(s)	446, 521
HphI	GGTGA	3 cut(s)	82, 307, 358
Hpy166II	GTNNAC	3 cut(s)	150, 166, 501
Hpy188III	TCNNGA	2 cut(s)	556, 565
Hpy8I	GTNNAC	3 cut(s)	150, 166, 501
HpyAV	CCTTC	5 cut(s)	75, 436, 503, 508, 612
HpyCH4V	TGCA	6 cut(s)	23, 32, 139, 196, 230, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	4 cut(s)	177, 222, 284, 489
Hsp92II	CATG	2 cut(s)	19, 110
Ksp22I	TGATCA	2 cut(s)	72, 297
Kzo9I	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	86, 189, 282, 483, 578
Lsp1109I	GCAGC	2 cut(s)	343, 374
LweI	GCATC	1 cut(s)	241
MalI	GATC	6 cut(s)	74, 113, 299, 308, 530, 563
MboI	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
MboII	GAAGA	8 cut(s)	89, 217, 245, 395, 412, 418, 538, 606
MfeI	CAATTG	1 cut(s)	156
MluCI	AATT	3 cut(s)	156, 278, 641
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	8 cut(s)	91, 342, 373, 379, 382, 385, 511, 584
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	2 cut(s)	365, 488
MunI	CAATTG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
NlaIII	CATG	2 cut(s)	19, 110
NlaIV	GGNNCC	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	333, 364
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	198
PvuII	CAGCTG	2 cut(s)	365, 488
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	332, 363
Sau3AI	GATC	6 cut(s)	72, 111, 297, 306, 528, 561
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	530
SetI	ASST	8 cut(s)	83, 97, 228, 336, 359, 367, 475, 490
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	194, 483
SinI	GGWCC	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	3 cut(s)	156, 278, 641
SspI	AATATT	1 cut(s)	434
StyI	CCWWGG	2 cut(s)	399, 618
TaqI	TCGA	2 cut(s)	524, 555
TasI	AATT	3 cut(s)	156, 278, 641
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	331, 362
TspDTI	ATGAA	3 cut(s)	4, 66, 452
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.