MD07G1233400.v1.1

Belongs to the chalcone isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014035
Physical Location & Seq
Reverse (-)
30720185 .. 30722337
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1233400.v1.1.491

Sequence Viewer

Length: 582 bp
ATGCAATTTCATTTGGGCACTGAAGTTGTATTGGTGGATGAGGTCCCTTTTCCTTCTAAGATCACAACCACCAAGCCTTTATCTCTGCTGGGTCAAGGAATTACCGACATAGAGATTCACTTTCTTCAAATTAAGTTCACAGCAATTGGGGTTTACCTGGATGCTGAAATTGTGTCACATCTTCAACAATGGAAGGCCAAAAAGGCAAATGAACTTGCAGAAGATGATGACTTCTTTGATGCTCTTGTTTCTGCTCCTGTCGAGAAATTCATTAGGGTTGTGGTGATCAAGGAGATCAAAGGGTCACAATATGGAGTGCAGGAAACCTTGGAGAAAGTTGTTGAGTTCTTCCAATCAAAGTACTTCAAGAAGGACTCCGTCATCACATTCCATTTTCCTGCAACTTCTAACACTGCTGAGATTGTGTTTAGCACTGAAGGGAAGGAAGAGTCAAAGATCAAAGTGGAGAATGCAAATGTGGTGGAGAATATCAAGAAATGGTATTTGGGAGGGACGAGAGGGGTGTCTCCGTCGACCATCTCCTCCTTGGCCAACACTCTCTCGGCTGAGTTGACCAAGTGA

Protein Analysis

194

Amino Acids

21.54

Weight (kDa)

5.45

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chalcone PF02431 12 - 105 3e-21 Chalcone-flavanone isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05270 AT5G05270
fragaria_vesca FvH4_7g25890 FvH4_7g25890
malus_domestica MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica Prupe.2G263900_v2.0.a1
pyrus_communis pycom01g18040
rosa_laevigata RLG00000026916
rosa_multiflora Rmu_sc0001755.1_g000020
rosa_roxburghii Rroxscaffold_4G00285160
rosa_rugosa Rorug01G0370200
rosa_samantha Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana Rw1G033320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 533
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 2 cut(s) 42, 456
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 3 cut(s) 128, 185, 367
AjnI CCWGG 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
Alw26I GTCTC 1 cut(s) 531
AoxI GGCC 2 cut(s) 195, 549
ApoI RAATTY 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 20
BalI TGGCCA 1 cut(s) 551
BccI CCATC 1 cut(s) 545
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 531
BglI GCCNNNNNGGC 1 cut(s) 203
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 2 cut(s) 151, 229
BsaJI CCNNGG 2 cut(s) 327, 546
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 327, 546
BseGI GGATG 2 cut(s) 43, 166
BseMII CTCAG 2 cut(s) 408, 558
BseRI GAGGAG 1 cut(s) 532
BseSI GKGCMC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 2 cut(s) 197, 551
BslFI GGGAC 2 cut(s) 29, 526
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 2 cut(s) 29, 526
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 2 cut(s) 197, 551
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 4 cut(s) 60, 285, 294, 456
BspANI GGCC 2 cut(s) 197, 551
BspCNI CTCAG 2 cut(s) 409, 559
BspLI GGNNCC 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 327, 546
BssMI GATC 4 cut(s) 60, 285, 294, 456
BssT1I CCWWGG 2 cut(s) 327, 546
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 441
BstDEI CTNAG 3 cut(s) 57, 417, 567
BstF5I GGATG 2 cut(s) 43, 166
BstKTI GATC 4 cut(s) 63, 288, 297, 459
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 4 cut(s) 60, 285, 294, 456
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 197, 551
BtsCI GGATG 2 cut(s) 43, 166
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 18, 411, 432
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 361
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviJI RGCY 4 cut(s) 76, 197, 551, 566
CviKI_1 RGCY 4 cut(s) 76, 197, 551, 566
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 3 cut(s) 57, 417, 567
DpnI GATC 4 cut(s) 62, 287, 296, 458
DpnII GATC 4 cut(s) 60, 285, 294, 456
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco130I CCWWGG 2 cut(s) 327, 546
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 42, 456
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 327, 546
ErhI CCWWGG 2 cut(s) 327, 546
FaiI YATR 2 cut(s) 110, 312
FaqI GGGAC 2 cut(s) 29, 526
FbaI TGATCA 1 cut(s) 285
FblI GTMKAC 1 cut(s) 533
FokI GGATG 2 cut(s) 50, 173
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 2 cut(s) 197, 551
HincII GTYRAC 2 cut(s) 534, 573
HindII GTYRAC 2 cut(s) 534, 573
HinfI GANTC 3 cut(s) 115, 374, 449
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 4 cut(s) 138, 154, 534, 573
Hpy188III TCNNGA 3 cut(s) 262, 367, 493
Hpy8I GTNNAC 4 cut(s) 138, 154, 534, 573
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 5 cut(s) 63, 187, 364, 431, 436
HpyCH4V TGCA 5 cut(s) 4, 218, 319, 401, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 57, 417, 567
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 4 cut(s) 60, 285, 294, 456
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 6 cut(s) 74, 143, 170, 270, 305, 411
LweI GCATC 2 cut(s) 151, 229
MaeIII GTNAC 2 cut(s) 174, 303
MalI GATC 4 cut(s) 62, 287, 296, 458
MboI GATC 4 cut(s) 60, 285, 294, 456
MboII GAAGA 5 cut(s) 116, 173, 233, 340, 458
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 6 cut(s) 5, 99, 129, 144, 168, 266
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 368, 458
MnlI CCTC 4 cut(s) 34, 503, 512, 553
Mox20I TGGCCA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 551
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 551
MspR9I CCNGG 1 cut(s) 158
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 4 cut(s) 60, 285, 294, 456
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 542
NmuCI GTSAC 2 cut(s) 174, 303
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 1 cut(s) 115
PflFI GACNNNGTC 1 cut(s) 377
PleI GAGTC 2 cut(s) 368, 457
PpsI GAGTC 2 cut(s) 368, 457
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SalI GTCGAC 1 cut(s) 532
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 4 cut(s) 60, 285, 294, 456
Sau96I GGNCC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 2 cut(s) 368, 458
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 20
SetI ASST 3 cut(s) 45, 159, 329
SfaNI GCATC 2 cut(s) 151, 229
SinI GGWCC 1 cut(s) 43
Sse9I AATT 6 cut(s) 5, 99, 129, 144, 168, 266
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 2 cut(s) 327, 546
TaqI TCGA 2 cut(s) 261, 533
TasI AATT 6 cut(s) 5, 99, 129, 144, 168, 266
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 3 cut(s) 25, 418, 439
TseFI GTSAC 2 cut(s) 174, 303
Tsp45I GTSAC 2 cut(s) 174, 303
TspDTI ATGAA 2 cut(s) 225, 259
TspGWI ACGGA 2 cut(s) 367, 519
TspRI CASTG 3 cut(s) 25, 418, 439
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.