Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014035

Physical Location & Seq

Genomic Coordinates Forward (+)

6988115 .. 6991482

Gene Structure 3368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTTACCGGTTTCACTGAAGAAGAAGAAGAATCAACCACTGTAGCTCTAACATTCTCGGTGAGACGGCAACGACATAGAACTTTTCTTGGTGGAAGAGGCTTAAGTATCACCTCTACCCTCATTATTCTTCTAGACAACTACTTCAATCTCACCATTTCTAAATTGCTAATAGGATCCTCGATCAAGAACACAGCTATGGGTGCAGTGAGTGCAGAAGTAGTGTTGGTGGATGAAATCCCTTTTCCTTCAGTGATCACAACCTCCAAGCCATTAGCTCTTCTGGGTCATGGGATCACGGACATTGAGATACACTTTCTGCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAGATTGTTGGACATCTGCAGAAATGGAAGACCAAGAAAGGAACTGAGCTTGCAGAAGATGATGACTTCTTTGATGCTCTTATTTCTGCTCCTGTTGAGAAATTTCTAAGAGTTGTGGTGATCAAGGAGATCAAAGGGTCTCAATATGGGGTGCAGCTTGAGAGTTCAGTGAGGGATAGGTTGGCAGCTGATGACAAATATGAGGAAGAGGAGGAGGAAGCCTTGGAGAAGATTGTTGAGTTCTTCCAATCAAAATATTTTAAGAAGGATTCCATCATAACATTTCATTTTCCAGCTACTTCCCCTACAGCTGAGATTGTGTTTACTGCTGAAGGGAAGGAGGAGTCGAAGATCAAAGTGGAAAATGCCAATGTTGTCGAGACGATCCAGAAATGGTATTTGGGTGGAACAAGAGGGGTTTCTCCTTCAACCATATCTTCCTTAGCTAACACACTCTCTGTTGAATTGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

279

Amino Acids

30.9

Weight (kDa)

5.08

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	77 - 273	6.2e-33	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05270 AT5G05270
fragaria_vesca	FvH4_7g25890 FvH4_7g25890
malus_domestica	MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica	Prupe.2G263900_v2.0.a1
pyrus_communis	pycom01g18040
rosa_laevigata	RLG00000026916
rosa_multiflora	Rmu_sc0001755.1_g000020
rosa_roxburghii	Rroxscaffold_4G00285160
rosa_rugosa	Rorug01G0370200
rosa_samantha	Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana	Rw1G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	171, 184, 302, 739
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	3 cut(s)	39, 234, 711
AflII	CTTAAG	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	148, 789, 824
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	9 cut(s)	47, 197, 278, 409, 517, 548, 656, 671, 806
AluI	AGCT	9 cut(s)	47, 197, 278, 409, 517, 548, 656, 671, 806
Alw26I	GTCTC	3 cut(s)	58, 504, 734
AlwI	GGATC	4 cut(s)	171, 184, 302, 739
ApeKI	GCWGC	2 cut(s)	514, 545
ApoI	RAATTY	1 cut(s)	461
AsiGI	ACCGGT	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	4 cut(s)	73, 103, 145, 490
AvaII	GGWCC	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	526, 557
BccI	CCATC	1 cut(s)	641
BceAI	ACGGC	1 cut(s)	83
BclI	TGATCA	2 cut(s)	255, 480
BcoDI	GTCTC	3 cut(s)	58, 504, 734
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	3 cut(s)	42, 377, 666
BfrI	CTTAAG	1 cut(s)	103
BisI	GCNGC	2 cut(s)	515, 546
BlsI	GCNGC	2 cut(s)	516, 547
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	178, 357
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	802
BpuEI	CTTGAG	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	351, 396, 663
BseRI	GAGGAG	3 cut(s)	584, 587, 716
BseXI	GCAGC	2 cut(s)	526, 557
BsgI	GTGCAG	3 cut(s)	225, 234, 533
BshTI	ACCGGT	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	9
BsmAI	GTCTC	3 cut(s)	58, 504, 734
BsmBI	CGTCTC	2 cut(s)	58, 734
Bso31I	GGTCTC	1 cut(s)	504
Bsp143I	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
BspCNI	CTCAG	3 cut(s)	352, 397, 664
BspLI	GGNNCC	2 cut(s)	178, 357
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	4 cut(s)	171, 184, 302, 739
BspQI	GCTCTTC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
BssT1I	CCWWGG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	3 cut(s)	91, 285, 561
BstAFI	CTTAAG	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	5 cut(s)	360, 405, 467, 672, 802
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	8 cut(s)	179, 186, 258, 297, 483, 492, 714, 747
BstMAI	GTCTC	3 cut(s)	58, 504, 734
BstMBI	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 212
BstPI	GGTNACC	1 cut(s)	4
BstSFI	CTRYAG	3 cut(s)	42, 377, 666
BstV1I	GCAGC	2 cut(s)	526, 557
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	5 cut(s)	15, 39, 213, 258, 534
Cac8I	GCNNGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	355
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	1 cut(s)	290
DdeI	CTNAG	5 cut(s)	360, 405, 467, 672, 802
DpnI	GATC	8 cut(s)	178, 185, 257, 296, 482, 491, 713, 746
DpnII	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
Eam1104I	CTCTTC	3 cut(s)	91, 285, 561
EarI	CTCTTC	3 cut(s)	91, 285, 561
Eco130I	CCWWGG	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	39, 234, 711
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	2 cut(s)	58, 734
FaeI	CATG	1 cut(s)	293
FaiI	YATR	7 cut(s)	78, 200, 291, 507, 561, 638, 794
FatI	CATG	1 cut(s)	289
FbaI	TGATCA	2 cut(s)	255, 480
Fnu4HI	GCNGC	2 cut(s)	515, 546
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	515, 546
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	515, 546
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	293
HinfI	GANTC	3 cut(s)	32, 629, 704
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	4 cut(s)	73, 103, 145, 490
Hpy166II	GTNNAC	3 cut(s)	333, 349, 684
Hpy188III	TCNNGA	4 cut(s)	134, 187, 739, 748
Hpy8I	GTNNAC	3 cut(s)	333, 349, 684
HpyAV	CCTTC	5 cut(s)	258, 619, 686, 691, 795
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	6 cut(s)	206, 215, 322, 379, 413, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 212
HpyF3I	CTNAG	5 cut(s)	360, 405, 467, 672, 802
Hsp92II	CATG	1 cut(s)	293
Ksp22I	TGATCA	2 cut(s)	255, 480
Kzo9I	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	6 cut(s)	22, 269, 372, 465, 666, 761
Lsp1109I	GCAGC	2 cut(s)	526, 557
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	8 cut(s)	178, 185, 257, 296, 482, 491, 713, 746
MboI	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	176
MluCI	AATT	4 cut(s)	164, 339, 461, 824
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	349
MseI	TTAA	2 cut(s)	104, 621
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	2 cut(s)	548, 671
MspCI	CTTAAG	1 cut(s)	103
MspI	CCGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	203, 212
NdeII	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	178, 357
PciSI	GCTCTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	32, 629
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	516, 547
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	178, 357
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	176
PvuII	CAGCTG	2 cut(s)	548, 671
RseI	CAYNNNNRTG	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	104, 621
SatI	GCNGC	2 cut(s)	515, 546
Sau3AI	GATC	8 cut(s)	176, 183, 255, 294, 480, 489, 711, 744
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	713
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	3 cut(s)	42, 377, 666
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	103, 518
SmoI	CTYRAG	2 cut(s)	103, 518
Sse9I	AATT	4 cut(s)	164, 339, 461, 824
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	3 cut(s)	182, 707, 738
TasI	AATT	4 cut(s)	164, 339, 461, 824
TfiI	GAWTC	2 cut(s)	32, 629
Tru1I	TTAA	2 cut(s)	104, 621
Tru9I	TTAA	2 cut(s)	104, 621
TscAI	CASTG	5 cut(s)	22, 46, 213, 258, 534
TseI	GCWGC	2 cut(s)	514, 545
TspDTI	ATGAA	2 cut(s)	249, 635
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	5 cut(s)	22, 46, 213, 258, 534
Vha464I	CTTAAG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	461
XbaI	TCTAGA	1 cut(s)	133
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.