Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014035

Physical Location & Seq

Genomic Coordinates Reverse (-)

59696585 .. 59698626

Gene Structure 2042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG373100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGTGCAGTAGGTGCAGAGGTAGTGTTGGTGGATGAAATCCCTTTTCCTTCAGTGATCACAACCTCCAAGCCATTAGCTTTGCTGGGTCATGGGATCACAGACATTGAGATACACTTTCTGCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAGATTGTTGGACATCTGCAGAAATGGAAGACCAAGAAAGGAACTGAGCTTGCAGAAGATGATGACTTCTTTGATGCTCTTATTTCTGCTCCTGTTGAGAAATTTCTAAGGGTTGTGGTGATCAAGGAGATCAAAGGGTCTCAATATGGGGTGCAGCTTGAGAGTTCAGTGAGGGATAGGTTGGCAGGTGATGACAAATATGAGGAAGAGGAGGAGGAAGCCTTGGAGAAGATTGTTGAGTTCTTCCAATCAAAATATTTTAAGAAGGATTCCATCATCACATTTCATTTTCCAGCTACTTCCCCTACAGCTGAGATTGTGTTTACTGCTGAAGGGAAGGAGGAGTCGAAGATCAAAGTGGAAAATGCCAATGTTGTCGAGACGATCCAGAAATGGTATTTGGGTGGAACAACAGGGGTTTCTCCTTCAACCATATCTTCCTTGGCTAACACACTCTCTGCTGAATTGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

212

Amino Acids

23.44

Weight (kDa)

4.79

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	11 - 208	3.6e-33	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05270 AT5G05270
fragaria_vesca	FvH4_7g25890 FvH4_7g25890
malus_domestica	MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica	Prupe.2G263900_v2.0.a1
pyrus_communis	pycom01g18040
rosa_laevigata	RLG00000026916
rosa_multiflora	Rmu_sc0001755.1_g000020
rosa_roxburghii	Rroxscaffold_4G00285160
rosa_rugosa	Rorug01G0370200
rosa_samantha	Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana	Rw1G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AclWI	GGATC	2 cut(s)	104, 541
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	2 cut(s)	36, 513
AgsI	TTSAA	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	5 cut(s)	80, 211, 319, 458, 473
AluI	AGCT	5 cut(s)	80, 211, 319, 458, 473
Alw26I	GTCTC	2 cut(s)	306, 536
AlwI	GGATC	2 cut(s)	104, 541
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	292, 362
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	443
BclI	TGATCA	2 cut(s)	57, 282
BcoDI	GTCTC	2 cut(s)	306, 536
BfmI	CTRYAG	2 cut(s)	179, 468
BfuAI	ACCTGC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	384, 603
BseDI	CCNNGG	2 cut(s)	384, 603
BseGI	GGATG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	153, 198, 465
BseRI	GAGGAG	3 cut(s)	386, 389, 518
BseXI	GCAGC	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	3 cut(s)	27, 36, 335
BsmAI	GTCTC	2 cut(s)	306, 536
BsmBI	CGTCTC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
BspCNI	CTCAG	3 cut(s)	154, 199, 466
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	2 cut(s)	104, 541
BspTNI	GGTCTC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	384, 603
BssMI	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
BssT1I	CCWWGG	2 cut(s)	384, 603
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	162, 207, 269, 474
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	6 cut(s)	60, 99, 285, 294, 516, 549
BstMAI	GTCTC	2 cut(s)	306, 536
BstMBI	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	2 cut(s)	179, 468
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	60, 336
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	157
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	8 cut(s)	73, 80, 211, 319, 383, 458, 473, 608
CviKI_1	RGCY	8 cut(s)	73, 80, 211, 319, 383, 458, 473, 608
DdeI	CTNAG	4 cut(s)	162, 207, 269, 474
DpnI	GATC	6 cut(s)	59, 98, 284, 293, 515, 548
DpnII	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	2 cut(s)	384, 603
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	36, 513
EcoT14I	CCWWGG	2 cut(s)	384, 603
ErhI	CCWWGG	2 cut(s)	384, 603
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	1 cut(s)	95
FaiI	YATR	4 cut(s)	93, 309, 363, 596
FatI	CATG	1 cut(s)	91
FbaI	TGATCA	2 cut(s)	57, 282
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	317
GsaI	CCCAGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	2 cut(s)	431, 506
HphI	GGTGA	2 cut(s)	292, 362
Hpy166II	GTNNAC	3 cut(s)	135, 151, 486
Hpy188III	TCNNGA	2 cut(s)	541, 550
Hpy8I	GTNNAC	3 cut(s)	135, 151, 486
HpyAV	CCTTC	5 cut(s)	60, 421, 488, 493, 597
HpyCH4V	TGCA	6 cut(s)	8, 17, 124, 181, 215, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	4 cut(s)	162, 207, 269, 474
Hsp92II	CATG	1 cut(s)	95
Ksp22I	TGATCA	2 cut(s)	57, 282
Kzo9I	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	7 cut(s)	71, 174, 267, 333, 468, 561, 563
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	226
MalI	GATC	6 cut(s)	59, 98, 284, 293, 515, 548
MboI	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
MboII	GAAGA	7 cut(s)	202, 230, 380, 397, 403, 523, 591
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	3 cut(s)	141, 263, 626
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	13, 76, 327, 358, 364, 367, 370, 496
MseI	TTAA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	473
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	159
PaqCI	CACCTGC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	6 cut(s)	57, 96, 282, 291, 513, 546
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	515
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	179, 468
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	141, 263, 626
SspI	AATATT	1 cut(s)	419
StyI	CCWWGG	2 cut(s)	384, 603
TaqI	TCGA	2 cut(s)	509, 540
TasI	AATT	3 cut(s)	141, 263, 626
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	60, 336
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	51, 437
TspRI	CASTG	2 cut(s)	60, 336
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.