Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014035

Physical Location & Seq

Genomic Coordinates Reverse (-)

17189101 .. 17190529

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCAATCCCAGTTGTTTTTTCAGACAAATATTCCCATCTCCTCCCTTCTTCTCCACAGCTTCCTGCTAATCATACCCCCAAATCACAAAGCCAGTAAGATGGGCACTGAAGTTGTAATGGTGGATGAAGTCCCTTTTCCTCCTCAGATTACAACCACCAAGCCATTATCTCTGCTGGGTCAAGGAATTACCGACATTGAGATTCACTTTCTTCAAATCAAGTTCACAGCAATTGGGGTTTACTTGGACCCTGAAGTTGCTTCACACCTTCAACAGTGGAAGGCCAAAAAGGCAGATGAACTTGCAGAAGATGATGACTTTTTTGATGCTCTTATTTCTGCCCCTGTTGAGAAGTTCATTAGGGTTGTGGTGATCAAGGAGATCAAAGGGTCACAATATGGAGTGCAGCTTGAGAGTGCAGTGAGGGACAGATTGGCAGCTGATGACAAATACGAGGAAGAGGAGGAGGAGGCCTTGGAAAAAGTTGTTGAGTTCTTCCAATCAAAGTACTTCAAGAAGGATTCCGTCATCACATTCCATTTTCCTGCAACTTCTGCCGCGGCCGAGATTGTGTTTAGCACCGAAGGGAAGCAAGAGTCGAAACTCAAAGTGGAGAATGCAAATGTGGTGGAGAACATCAAGAAATGGTATTTGGGTGGGACAAGAGGGGTGTCTCCTTCGACCATCTCCTCCCTGGCCAACGTACTCTCAGCTGAACTGAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

243

Amino Acids

27.02

Weight (kDa)

5.07

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	41 - 238	5.6e-33	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05270 AT5G05270
fragaria_vesca	FvH4_7g25890 FvH4_7g25890
malus_domestica	MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica	Prupe.2G263900_v2.0.a1
pyrus_communis	pycom01g18040
rosa_laevigata	RLG00000026916
rosa_multiflora	Rmu_sc0001755.1_g000020
rosa_roxburghii	Rroxscaffold_4G00285160
rosa_rugosa	Rorug01G0370200
rosa_samantha	Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana	Rw1G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	560
AciI	CCGC	2 cut(s)	558, 560
AcoI	YGGCCR	2 cut(s)	561, 696
AcuI	CTGAAG	2 cut(s)	129, 273
AfaI	GTAC	2 cut(s)	509, 705
AgsI	TTSAA	3 cut(s)	215, 272, 514
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	4 cut(s)	60, 409, 440, 713
AluI	AGCT	4 cut(s)	60, 409, 440, 713
Alw26I	GTCTC	1 cut(s)	678
AoxI	GGCC	4 cut(s)	282, 471, 561, 696
ApeKI	GCWGC	2 cut(s)	406, 437
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	698
BbvI	GCAGC	2 cut(s)	418, 449
BccI	CCATC	3 cut(s)	44, 94, 692
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	678
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	4 cut(s)	407, 438, 558, 561
BlsI	GCNGC	4 cut(s)	408, 439, 559, 562
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	695
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	4
BpuEI	CTTGAG	1 cut(s)	431
BsaJI	CCNNGG	3 cut(s)	474, 558, 693
Bse1I	ACTGG	2 cut(s)	10, 93
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	474, 558, 693
BseGI	GGATG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	158, 710, 723
BseNI	ACTGG	2 cut(s)	10, 93
BseRI	GAGGAG	6 cut(s)	31, 132, 476, 479, 482, 679
BseSI	GKGCMC	1 cut(s)	107
BseX3I	CGGCCG	1 cut(s)	561
BseXI	GCAGC	2 cut(s)	418, 449
BseYI	CCCAGC	1 cut(s)	175
BsgI	GTGCAG	2 cut(s)	425, 438
Bsh1236I	CGCG	1 cut(s)	560
Bsh1285I	CGRYCG	1 cut(s)	564
BshFI	GGCC	4 cut(s)	284, 473, 563, 698
BsiEI	CGRYCG	1 cut(s)	564
BslFI	GGGAC	3 cut(s)	116, 440, 673
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	3 cut(s)	116, 440, 673
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	284, 473, 563, 698
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	372, 381
BspACI	CCGC	2 cut(s)	558, 560
BspANI	GGCC	4 cut(s)	284, 473, 563, 698
BspCNI	CTCAG	3 cut(s)	157, 711, 722
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	10, 93
BssECI	CCNNGG	3 cut(s)	474, 558, 693
BssMI	GATC	2 cut(s)	372, 381
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstDEI	CTNAG	3 cut(s)	144, 709, 719
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	560
BstKTI	GATC	2 cut(s)	375, 384
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	2 cut(s)	372, 381
BstMCI	CGRYCG	1 cut(s)	564
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 554
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	418, 449
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstZI	CGGCCG	1 cut(s)	561
BsuRI	GGCC	4 cut(s)	284, 473, 563, 698
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	105, 281, 426
Cfr13I	GGNCC	1 cut(s)	247
Cfr42I	CCGCGG	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	508, 704
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviQI	GTAC	2 cut(s)	508, 704
DdeI	CTNAG	3 cut(s)	144, 709, 719
DpnI	GATC	2 cut(s)	374, 383
DpnII	GATC	2 cut(s)	372, 381
EaeI	YGGCCR	2 cut(s)	561, 696
EagI	CGGCCG	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EclXI	CGGCCG	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	129, 273
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaiI	YATR	2 cut(s)	74, 399
FaqI	GGGAC	3 cut(s)	116, 440, 673
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	407, 438, 558, 561
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	4 cut(s)	407, 438, 558, 561
GluI	GCNGC	4 cut(s)	407, 438, 558, 561
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	4 cut(s)	284, 473, 563, 698
HinfI	GANTC	3 cut(s)	202, 521, 596
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	225, 241
Hpy188I	TCNGA	2 cut(s)	24, 147
Hpy188III	TCNNGA	2 cut(s)	514, 640
Hpy8I	GTNNAC	2 cut(s)	225, 241
HpyAV	CCTTC	6 cut(s)	56, 274, 278, 511, 578, 687
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	6 cut(s)	4, 305, 406, 419, 548, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 554
HpyF3I	CTNAG	3 cut(s)	144, 709, 719
HpySE526I	ACGT	1 cut(s)	702
Ksp22I	TGATCA	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	372, 381
LpnPI	CCDG	9 cut(s)	23, 77, 106, 161, 264, 357, 558, 680, 707
Lsp1109I	GCAGC	2 cut(s)	418, 449
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	2 cut(s)	374, 383
MboI	GATC	2 cut(s)	372, 381
MboII	GAAGA	5 cut(s)	41, 203, 320, 470, 487
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	2 cut(s)	186, 231
MluNI	TGGCCA	1 cut(s)	698
MlyI	GAGTC	1 cut(s)	605
Mox20I	TGGCCA	1 cut(s)	698
MscI	TGGCCA	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	698
MspA1I	CMGCKG	3 cut(s)	440, 560, 713
MspR9I	CCNGG	1 cut(s)	695
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	290, 554
NdeII	GATC	2 cut(s)	372, 381
NlaIV	GGNNCC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	473
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	202, 521
PkrI	GCNGC	4 cut(s)	408, 439, 559, 562
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	693
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	247
PvuII	CAGCTG	2 cut(s)	440, 713
RsaI	GTAC	2 cut(s)	509, 705
RsaNI	GTAC	2 cut(s)	508, 704
SacII	CCGCGG	1 cut(s)	561
SatI	GCNGC	4 cut(s)	407, 438, 558, 561
Sau3AI	GATC	2 cut(s)	372, 381
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	62, 270, 411, 442, 705, 715
SfaNI	GCATC	1 cut(s)	316
Sfr303I	CCGCGG	1 cut(s)	561
SgrBI	CCGCGG	1 cut(s)	561
SinI	GGWCC	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	186, 231
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	2 cut(s)	558, 560
SspI	AATATT	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	2 cut(s)	599, 680
TasI	AATT	2 cut(s)	186, 231
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	2 cut(s)	560, 563
TfiI	GAWTC	2 cut(s)	202, 521
TscAI	CASTG	3 cut(s)	112, 281, 426
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	2 cut(s)	406, 437
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	3 cut(s)	141, 312, 346
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	3 cut(s)	112, 281, 426
VpaK11BI	GGWCC	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.