MD02G1060800.v1.1

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010126
Physical Location & Seq
Forward (+)
4876600 .. 4878825
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1060800.v1.1.491

Sequence Viewer

Length: 1830 bp
ATGACGTCTCTGAAGGAGCTGATTCCGCCGCCGGCGGCAACCACAACGACTTATTACGACCACTCGAACGATCCGTGGTTCAAGCAGCGGTTCAGTTCTGCCGAGGCAGAAAGATCTGCAGCTGTCGTTAAACCTAATCCTGTGCCTCAGTACTTGAAACGTCAAGGCTTTGTTCCTAGGAAGGTGGAGGATTTCGGGGAAGGCGGTGCTTTCCCGGAGATTCACATTGCTCAGTACCCTCTTGGCATGGGCAGGGACAAGTTGTCGAAACCCGGGACGAAGATTCTTCCAGTTTCGGTTGATGCGAATGGGGAGATTGCGTATGATGCTATTGTTAAGCAGAATGAGAACTCGAGAAAGATTGTGTATTCTCAGCATAAGGATATTGTGCCAAAAATTTTGAAGGATGCGGAAGAGGAGATGGAAGAGGATGAGGATGAGGAGGAGCAGAAGGTGATTGAAGAAACGACGGCAGAAACAAAAGCTGCGCTTGAGAAGATTGTGAATGTGAGATTGAGCGCTGCACAGCCGAAAAATGTGGCCAAGCAGTCGTCAGAATCGCAATATATCAAGTATAAACCGTCACAGAAATCGGAGGCATTTAATTCTGGTGCCAAGGAGAGGATTATCATGATGAACGAGATGCCTGTGGATCCACTTGAGCCTCCGAAGTTCAAGCATAAGCGTGTTCCGAGGGCTTCTGGATCCCCACCTGTCCCGGTCATGCATTCCCCTCCTCGGCCGGTGACTGTGAAAGACCAGCAGGATTGGAAGATTCCACCTTGTATTTCAAACTGGAAGAACCCAAAAGGGTATACAATTCCATTGGACAAACGTCTTGCAGCTGATGGGAGAGGCCTTCAAGATGTTCAGATTAATGATAATTTTGCAAAGCTCTCTGAGTCTTTGTATGTTGCGGAGCAGAAGGCTAGAGAGGCAGTTGCTATGAGATCTAAAGTTCAGAAGGAAATGTTGATGAAGGAGAAAGAAAAGAAAGAGCAGGAGTTGAGGGCATTAGCGCAGAAAGCGCGTTCTGAGAGAACAGGTGCTGCGCCCCCTGCAGCTGTTCCAATGGCTTCTGACAGAACAGCCATGGATACTGATATGAGAGGGGATTATGGGCGTCCAACAAGGGAAAAGGAAATGGATTATCCAAAGGGGACAAGAGAAAAGGAAGAAGAGAGGATTGGGAGGGACAAGATCCGCGAAGAGCGGCGCAAAGAGAGAGAAAGGGAGAGAAGGTTGGAGGCCAAAGATGTAGCAGTGGGGAAGAAAAGTAAAATTACGAGAGATAGAGATCGTGATATTAGCGAGAAAGTTGCTCTTGGCATGGCTTCGGCGGGAGCAGGCAAAGGGGGAGAGGTTATGTATGATCAGAGGCTATTCAACCAGGAGAAAGGAATGGACTCCGGGTTTGCCACTGATGACCAGTACAATGTTTACGACAAAGGCTTGTTTACTGCTCAGCCGACACTCTCAACTCTATACAGGCCTAAAAAGGATGTTGATGGTGAAATGTATGGCGGTGCTGATGAGCAGTTGGATAAGATTATGAAGACTGATCGCTTCAAACCCGACAGAGGATTTGGAGGAGCTGCTGAGAGGGCAGGGCCAAGAGATAGACCAGTCGAGTTTGAGAAGGATGCTGTGGAAGAAGCTGATCCATTTGGTCTTGACCAGTTCTTGACAGAGGTGAAGAAGGGCGGCAAGAAAGCGCTTGATAAGGTTGGAACAGGAGGAACAATGAGAGCAAGTGGCGGCTCTTCCATGCGAGATGCCTATGAAGGCGGCTCCAGCAGAACTCGTATTGGCTTTGAAAGGGGTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

610

Amino Acids

68.33

Weight (kDa)

8.87

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKIP_SNW PF02731 188 - 347 1.9e-72 SKIP/SNW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77180 AT1G77180 AT1G77180
fragaria_vesca FvH4_1g05870 FvH4_1g05870
malus_domestica MD02G1060800.v1.1 MD15G1194300.v1.1
prunus_persica Prupe.6G190500_v2.0.a1
pyrus_communis pycom02g04990 pycom15g17390
rosa_chinensis RchiOBHm_Chr2g0091531 RchiOBHm_Chr2g0091611
rosa_laevigata RLG00000016233
rosa_multiflora Rmu_sc0002407.1_g000004
rosa_roxburghii Rroxscaffold_2G00149960
rosa_rugosa Rorug02G0018500
rosa_samantha Rh2AG063700 Rh2BG063100 Rh2CG064800 Rh2DG063200
rosa_wichuraiana Rw2G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 611
AccBSI CCGCTC 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 815
AccII CGCG 2 cut(s) 1030, 1206
AclWI GGATC 7 cut(s) 65, 647, 660, 699, 712, 1195, 1655
AcoI YGGCCR 2 cut(s) 540, 740
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 2 cut(s) 5, 1123
AfaI GTAC 3 cut(s) 152, 236, 1433
AfeI AGCGCT 2 cut(s) 520, 1716
AfiI CCNNNNNNNGG 3 cut(s) 621, 738, 1580
AhdI GACNNNNNGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 1389
AjuI GAANNNNNNNTTGG 2 cut(s) 1170, 1202
AluBI AGCT 8 cut(s) 19, 122, 485, 845, 895, 1064, 1595, 1658
AluI AGCT 8 cut(s) 19, 122, 485, 845, 895, 1064, 1595, 1658
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 7 cut(s) 65, 647, 660, 699, 712, 1195, 1655
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 2 cut(s) 272, 352
Aor51HI AGCGCT 2 cut(s) 520, 1716
AoxI GGCC 6 cut(s) 540, 740, 856, 1248, 1490, 1610
ApeKI GCWGC 8 cut(s) 85, 119, 485, 521, 842, 1049, 1061, 1595
ApoI RAATTY 1 cut(s) 396
ArsI GACNNNNNNTTYG 4 cut(s) 1397, 1429, 1568, 1600
AseI ATTAAT 1 cut(s) 876
AspA2I CCTAGG 1 cut(s) 176
AspLEI GCGC 7 cut(s) 490, 521, 1021, 1030, 1054, 1218, 1717
AspS9I GGNCC 1 cut(s) 1610
AsuC2I CCSGG 5 cut(s) 215, 273, 274, 719, 1411
AsuHPI GGTGA 4 cut(s) 466, 757, 1523, 1705
AvaI CYCGRG 2 cut(s) 272, 352
AvrII CCTAGG 1 cut(s) 176
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 2 cut(s) 652, 704
BanI GGYRCC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 1562
BbvI GCAGC 8 cut(s) 97, 131, 472, 508, 854, 1036, 1073, 1582
BccI CCATC 3 cut(s) 415, 842, 1502
BceAI ACGGC 1 cut(s) 486
BcgI CGANNNNNNTGC 2 cut(s) 1301, 1335
BciT130I CCWGG 1 cut(s) 1391
BciVI GTATCC 1 cut(s) 1090
BclI TGATCA 1 cut(s) 1372
BcnI CCSGG 5 cut(s) 215, 273, 274, 719, 1411
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 177, 930
BfmI CTRYAG 2 cut(s) 117, 1059
BfoI RGCGCY 2 cut(s) 522, 1718
BfuI GTATCC 1 cut(s) 1090
BglII AGATCT 2 cut(s) 113, 950
BlnI CCTAGG 1 cut(s) 176
BlpI GCTNAGC 1 cut(s) 1464
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 6 cut(s) 215, 273, 274, 719, 1391, 1411
BmeRI GACNNNNNGTC 1 cut(s) 262
BmeT110I CYCGRG 2 cut(s) 272, 352
BmgT120I GGNCC 1 cut(s) 1610
BmiI GGNNCC 4 cut(s) 613, 654, 706, 1792
BmrFI CCNGG 6 cut(s) 215, 273, 274, 719, 1391, 1411
BmsI GCATC 6 cut(s) 292, 316, 397, 633, 1633, 1765
BoxI GACNNNNGTC 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 1562
BpmI CTGGAG 1 cut(s) 1777
Bpu1102I GCTNAGC 1 cut(s) 1464
BpuEI CTTGAG 2 cut(s) 512, 680
BpuMI CCSGG 5 cut(s) 215, 273, 274, 719, 1411
BsaBI GATNNNNATC 1 cut(s) 1296
BsaHI GRCGYC 2 cut(s) 5, 1123
BsaJI CCNNGG 8 cut(s) 74, 102, 176, 272, 615, 692, 737, 1092
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 1226, 1256
Bsc4I CCNNNNNNNGG 3 cut(s) 621, 738, 1580
Bse118I RCCGGY 2 cut(s) 31, 742
Bse1I ACTGG 5 cut(s) 290, 800, 1429, 1625, 1678
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 1296
BseBI CCWGG 1 cut(s) 1391
BseDI CCNNGG 8 cut(s) 74, 102, 176, 272, 615, 692, 737, 1092
BseGI GGATG 5 cut(s) 412, 436, 442, 1507, 1648
BseJI GATNNNNATC 1 cut(s) 1296
BseLI CCNNNNNNNGG 3 cut(s) 621, 738, 1580
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 7 cut(s) 161, 245, 386, 891, 1026, 1478, 1590
BseNI ACTGG 5 cut(s) 290, 800, 1429, 1625, 1678
BseRI GAGGAG 5 cut(s) 431, 455, 458, 726, 1605
BseX3I CGGCCG 1 cut(s) 740
BseXI GCAGC 8 cut(s) 97, 131, 472, 508, 854, 1036, 1073, 1582
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 2 cut(s) 1030, 1206
Bsh1285I CGRYCG 1 cut(s) 743
BshFI GGCC 6 cut(s) 542, 742, 858, 1250, 1492, 1612
BshNI GGYRCC 1 cut(s) 611
BsiEI CGRYCG 1 cut(s) 743
BsiHKCI CYCGRG 2 cut(s) 272, 352
BsiSI CCGG 6 cut(s) 32, 215, 273, 719, 743, 1410
BslFI GGGAC 5 cut(s) 269, 289, 701, 1174, 1208
BslI CCNNNNNNNGG 3 cut(s) 621, 738, 1580
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 5 cut(s) 269, 289, 701, 1174, 1208
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 6 cut(s) 542, 742, 858, 1250, 1492, 1612
BsoBI CYCGRG 2 cut(s) 272, 352
Bsp1720I GCTNAGC 1 cut(s) 1464
Bsp19I CCATGG 1 cut(s) 1092
BspANI GGCC 6 cut(s) 542, 742, 858, 1250, 1492, 1612
BspCNI CTCAG 7 cut(s) 160, 244, 385, 892, 1027, 1477, 1591
BspFNI CGCG 2 cut(s) 1030, 1206
BspHI TCATGA 1 cut(s) 630
BspLI GGNNCC 4 cut(s) 613, 654, 706, 1792
BspMAI CTGCAG 2 cut(s) 121, 1063
BspPI GGATC 7 cut(s) 65, 647, 660, 699, 712, 1195, 1655
BspQI GCTCTTC 2 cut(s) 1203, 1768
BspT107I GGYRCC 1 cut(s) 611
BsrBI CCGCTC 1 cut(s) 1213
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 2 cut(s) 31, 742
BsrI ACTGG 5 cut(s) 290, 800, 1429, 1625, 1678
BssAI RCCGGY 2 cut(s) 31, 742
BssECI CCNNGG 8 cut(s) 74, 102, 176, 272, 615, 692, 737, 1092
BssNAI GTATAC 1 cut(s) 816
BssNI GRCGYC 2 cut(s) 5, 1123
BssT1I CCWWGG 3 cut(s) 176, 615, 1092
Bst1107I GTATAC 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 1391
Bst4CI ACNGT 2 cut(s) 582, 751
Bst6I CTCTTC 5 cut(s) 408, 420, 1173, 1203, 1768
BstACI GRCGYC 2 cut(s) 5, 1123
BstC8I GCNNGC 2 cut(s) 33, 1348
BstDEI CTNAG 7 cut(s) 147, 231, 372, 900, 1035, 1464, 1599
BstDSI CCRYGG 2 cut(s) 74, 1092
BstF5I GGATG 5 cut(s) 412, 436, 442, 1507, 1648
BstFNI CGCG 2 cut(s) 1030, 1206
BstH2I RGCGCY 2 cut(s) 522, 1718
BstHHI GCGC 7 cut(s) 490, 521, 1021, 1030, 1054, 1218, 1717
BstMAI GTCTC 1 cut(s) 12
BstMCI CGRYCG 1 cut(s) 743
BstMWI GCNNNNNNNGC 8 cut(s) 25, 326, 935, 1025, 1027, 1058, 1604, 1794
BstNI CCWGG 1 cut(s) 1391
BstPAI GACNNNNGTC 1 cut(s) 834
BstSCI CCNGG 6 cut(s) 213, 271, 272, 717, 1389, 1409
BstSFI CTRYAG 2 cut(s) 117, 1059
BstUI CGCG 2 cut(s) 1030, 1206
BstV1I GCAGC 8 cut(s) 97, 131, 472, 508, 854, 1036, 1073, 1582
BstV2I GAAGAC 1 cut(s) 1562
BstX2I RGATCY 5 cut(s) 113, 652, 704, 950, 1200
BstYI RGATCY 5 cut(s) 113, 652, 704, 950, 1200
BstZ17I GTATAC 1 cut(s) 816
BstZI CGGCCG 1 cut(s) 740
BsuI GTATCC 1 cut(s) 1090
BsuRI GGCC 6 cut(s) 542, 742, 858, 1250, 1492, 1612
BtgI CCRYGG 2 cut(s) 74, 1092
BtsCI GGATG 5 cut(s) 412, 436, 442, 1507, 1648
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 2 cut(s) 1269, 1419
Cac8I GCNNGC 2 cut(s) 33, 1348
CaiI CAGNNNCTG 1 cut(s) 1049
CciI TCATGA 1 cut(s) 630
CfoI GCGC 7 cut(s) 490, 521, 1021, 1030, 1054, 1218, 1717
Cfr10I RCCGGY 2 cut(s) 31, 742
Cfr13I GGNCC 1 cut(s) 1610
Cfr9I CCCGGG 1 cut(s) 272
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 3 cut(s) 151, 235, 1432
CviAII CATG 6 cut(s) 247, 631, 724, 1093, 1330, 1768
CviQI GTAC 3 cut(s) 151, 235, 1432
DdeI CTNAG 7 cut(s) 147, 231, 372, 900, 1035, 1464, 1599
DriI GACNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 540, 740
EagI CGGCCG 1 cut(s) 740
Eam1104I CTCTTC 5 cut(s) 408, 420, 1173, 1203, 1768
Eam1105I GACNNNNNGTC 1 cut(s) 262
EarI CTCTTC 5 cut(s) 408, 420, 1173, 1203, 1768
EciI GGCGGA 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 740
Eco130I CCWWGG 3 cut(s) 176, 615, 1092
Eco147I AGGCCT 2 cut(s) 858, 1492
Eco47III AGCGCT 2 cut(s) 520, 1716
Eco52I CGGCCG 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 2 cut(s) 272, 352
EcoRII CCWGG 1 cut(s) 1389
EcoT14I CCWWGG 3 cut(s) 176, 615, 1092
EcoT22I ATGCAT 1 cut(s) 729
ErhI CCWWGG 3 cut(s) 176, 615, 1092
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 6 cut(s) 250, 634, 727, 1096, 1333, 1771
FalI AAGNNNNNCTT 4 cut(s) 474, 506, 1308, 1340
FaqI GGGAC 5 cut(s) 269, 289, 701, 1174, 1208
FatI CATG 6 cut(s) 246, 630, 723, 1092, 1329, 1767
FauI CCCGC 1 cut(s) 1333
FbaI TGATCA 1 cut(s) 1372
FblI GTMKAC 1 cut(s) 815
FokI GGATG 5 cut(s) 419, 443, 449, 1514, 1655
FspBI CTAG 2 cut(s) 177, 930
GlaI GCGC 7 cut(s) 489, 520, 1020, 1029, 1053, 1217, 1716
GsuI CTGGAG 1 cut(s) 1777
HaeII RGCGCY 2 cut(s) 522, 1718
HaeIII GGCC 6 cut(s) 542, 742, 858, 1250, 1492, 1612
HapII CCGG 6 cut(s) 32, 215, 273, 719, 743, 1410
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 7 cut(s) 490, 521, 1021, 1030, 1054, 1218, 1717
Hin1I GRCGYC 2 cut(s) 5, 1123
Hin1II CATG 6 cut(s) 250, 634, 727, 1096, 1333, 1771
Hin6I GCGC 7 cut(s) 488, 519, 1019, 1028, 1052, 1216, 1715
HinP1I GCGC 7 cut(s) 488, 519, 1019, 1028, 1052, 1216, 1715
HinfI GANTC 7 cut(s) 22, 220, 283, 557, 775, 902, 1406
HpaII CCGG 6 cut(s) 32, 215, 273, 719, 743, 1410
HphI GGTGA 4 cut(s) 466, 757, 1523, 1705
Hpy166II GTNNAC 3 cut(s) 816, 1441, 1458
Hpy188III TCNNGA 7 cut(s) 354, 631, 702, 863, 1301, 1673, 1684
Hpy8I GTNNAC 3 cut(s) 816, 1441, 1458
Hpy99I CGWCG 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 582, 751
HpyCH4IV ACGT 3 cut(s) 5, 160, 835
HpyCH4V TGCA 6 cut(s) 119, 524, 727, 842, 890, 1061
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 326, 935, 1025, 1027, 1058, 1604, 1794
HpyF3I CTNAG 7 cut(s) 147, 231, 372, 900, 1035, 1464, 1599
HpySE526I ACGT 3 cut(s) 5, 160, 835
Hsp92I GRCGYC 2 cut(s) 5, 1123
Hsp92II CATG 6 cut(s) 250, 634, 727, 1096, 1333, 1771
HspAI GCGC 7 cut(s) 488, 519, 1019, 1028, 1052, 1216, 1715
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 1372
LguI GCTCTTC 2 cut(s) 1203, 1768
LmnI GCTCC 6 cut(s) 16, 445, 919, 1343, 1592, 1796
Lsp1109I GCAGC 8 cut(s) 97, 131, 472, 508, 854, 1036, 1073, 1582
LweI GCATC 6 cut(s) 292, 316, 397, 633, 1633, 1765
MaeI CTAG 2 cut(s) 177, 930
MaeII ACGT 3 cut(s) 5, 160, 835
MaeIII GTNAC 2 cut(s) 582, 745
MbiI CCGCTC 1 cut(s) 1213
MflI RGATCY 5 cut(s) 113, 652, 704, 950, 1200
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 5 cut(s) 396, 604, 819, 883, 1281
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 2 cut(s) 911, 1400
MmeI TCCRAC 4 cut(s) 1151, 1224, 1521, 1708
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 1 cut(s) 729
MreI CGCCGGCG 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 31
MscI TGGCCA 1 cut(s) 542
MseI TTAA 4 cut(s) 129, 336, 603, 876
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 4 cut(s) 88, 122, 845, 1064
MspI CCGG 6 cut(s) 32, 215, 273, 719, 743, 1410
MspR9I CCNGG 6 cut(s) 215, 273, 274, 719, 1391, 1411
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 1 cut(s) 1391
MvnI CGCG 2 cut(s) 1030, 1206
MwoI GCNNNNNNNGC 8 cut(s) 25, 326, 935, 1025, 1027, 1058, 1604, 1794
NaeI GCCGGC 1 cut(s) 33
NciI CCSGG 5 cut(s) 215, 273, 274, 719, 1411
NcoI CCATGG 1 cut(s) 1092
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 6 cut(s) 250, 634, 727, 1096, 1333, 1771
NlaIV GGNNCC 4 cut(s) 613, 654, 706, 1792
NmeAIII GCCGAG 2 cut(s) 127, 718
NmuCI GTSAC 2 cut(s) 582, 745
NsiI ATGCAT 1 cut(s) 729
PaeR7I CTCGAG 1 cut(s) 352
PagI TCATGA 1 cut(s) 630
PceI AGGCCT 2 cut(s) 858, 1492
PciSI GCTCTTC 2 cut(s) 1203, 1768
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 302
PctI GAATGC 1 cut(s) 727
PdiI GCCGGC 1 cut(s) 33
PfeI GAWTC 5 cut(s) 22, 220, 283, 557, 775
PfoI TCCNGGA 1 cut(s) 213
PleI GAGTC 2 cut(s) 910, 1400
PpsI GAGTC 2 cut(s) 910, 1400
PshAI GACNNNNGTC 1 cut(s) 834
PshBI ATTAAT 1 cut(s) 876
Psp6I CCWGG 1 cut(s) 1389
PspGI CCWGG 1 cut(s) 1389
PspN4I GGNNCC 4 cut(s) 613, 654, 706, 1792
PspPI GGNCC 1 cut(s) 1610
PstI CTGCAG 2 cut(s) 121, 1063
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 5 cut(s) 113, 652, 704, 950, 1200
PvuII CAGCTG 3 cut(s) 122, 845, 1064
RsaI GTAC 3 cut(s) 152, 236, 1433
RsaNI GTAC 3 cut(s) 151, 235, 1432
RseI CAYNNNNRTG 1 cut(s) 684
SapI GCTCTTC 2 cut(s) 1203, 1768
SaqAI TTAA 4 cut(s) 129, 336, 603, 876
Sau96I GGNCC 1 cut(s) 1610
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 2 cut(s) 911, 1400
ScrFI CCNGG 6 cut(s) 215, 273, 274, 719, 1391, 1411
SfaNI GCATC 6 cut(s) 292, 316, 397, 633, 1633, 1765
SfcI CTRYAG 2 cut(s) 117, 1059
Sfr274I CTCGAG 1 cut(s) 352
SgrAI CRCCGGYG 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 352
SmaI CCCGGG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 3 cut(s) 352, 491, 659
SmoI CTYRAG 3 cut(s) 352, 491, 659
Sse9I AATT 5 cut(s) 396, 604, 819, 883, 1281
SseBI AGGCCT 2 cut(s) 858, 1492
SspMI CTAG 2 cut(s) 177, 930
StuI AGGCCT 2 cut(s) 858, 1492
StyD4I CCNGG 6 cut(s) 213, 271, 272, 717, 1389, 1409
StyI CCWWGG 3 cut(s) 176, 615, 1092
TaaI ACNGT 2 cut(s) 582, 751
TaiI ACGT 3 cut(s) 8, 163, 838
TaqI TCGA 4 cut(s) 65, 266, 353, 1629
TasI AATT 5 cut(s) 396, 604, 819, 883, 1281
TatI WGTACW 2 cut(s) 150, 1431
TauI GCSGC 6 cut(s) 31, 38, 1216, 1707, 1761, 1791
TfiI GAWTC 5 cut(s) 22, 220, 283, 557, 775
Tru1I TTAA 4 cut(s) 129, 336, 603, 876
Tru9I TTAA 4 cut(s) 129, 336, 603, 876
TscAI CASTG 2 cut(s) 1269, 1426
TseFI GTSAC 2 cut(s) 582, 745
TseI GCWGC 8 cut(s) 85, 119, 485, 521, 842, 1049, 1061, 1595
Tsp45I GTSAC 2 cut(s) 582, 745
TspDTI ATGAA 4 cut(s) 650, 992, 1568, 1797
TspGWI ACGGA 1 cut(s) 63
TspMI CCCGGG 1 cut(s) 272
TspRI CASTG 2 cut(s) 1269, 1426
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 352
XmaI CCCGGG 1 cut(s) 272
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 815
XspI CTAG 2 cut(s) 177, 930
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.