Rorug02G0018500

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010126
Physical Location & Seq
Forward (+)
1533403 .. 1540231
6829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0018500.1

Sequence Viewer

Length: 1587 bp
ATGCCATGTTTAACTATAGGAGTGGGAAGATCCTATGTTCGTGTTACATTGCAAGCAATATGCAGGTCATCGTTCGACTGCAAGAAATGCTACAAGTCGTATTCCAGTGATGAACACAACTACTTGGATCTCACTGTTACTGCTGGATTGAAGAAGTACGTTGAAGTTAAACCAGTTGGCACTGAGTTATTCAGGAGATCCTTCATGTCCTTCATTTATGAAAAAGGTTATCGTCAGTATTTTAGACGAGATGGCTTCCCAGGTCCTGATGAAGAATTTAAAATGGCTCAGGACTACTTTAAATCCACTGAAGGTGGTGTTCTGGTGGATGTTAGCTGTGGGAGTGGTTTGTTCGCGATAAGATTCGCCAAATCTGGGACCTATTCAGGAGTTGTGGCACTTGATTTTTCTGAAAATATGCTTCTCCAGTGCTATGATTATCTTATGAGAGACCCTACTAATTTTTTGGCTACTACGATTTTAACAACTGCAGTGATCTTGTTCTTAATTGTGAGGACCGATGTTTCTAGGCTTCCATTCACATCATGTTCAGTTGATGCTGTCCATGCCGGCGCTGCATTGCACTGCTGGCCATCTCCTTCCAACGCTGTTGCTGAAATCACTCGTGTATTGCGAAGTGGTGGCATCTTTGTTGGGACCACTTTTCTGCGGTCTAGTCCTTCAAGTACTTCCTGGATATTCAAACCACTCAATGAGGAGAAGAGCTCGAGCACCCAGAAAAGTCAAAGCTCGGGCATTGAGTTTTTGTCATGCCCAGTTTGCTATGAACCGCTAATACGAAAAGGCCCAACTGGTCTAAACCTGGAAGCAATATACAGGTCAGGTTTCAAGTGCAAGAAATGTGACAAGTCGTATTCCAGCAAAGACATTTACTTGGACCTTACTGTTACTGCTGGGTTGAAGCAGTACGTTGAAGTCAACCCAGCTAGGACTGAGTTGTTTAGGAGCCCACTGGTGTCGTTTTTGTATGAAAGAGGTTGGCGCCAGAATTTTAGTAGTAGTGGATTTCCAGGTCCTGATGAAGAGTTTAAAATGGCTCAGGACTACTTTAAATCCGCGGAAGGCGGTTTTCTAGTGGATGTGAGCTGTGGGAGTGGTTTGTTTTCGAGGAAATTTGCGAAATCGGAGAGTTATTCTGGAGTTGTGGCGCTTGATTTTTCGGAAAATATGCTCCGACAGTGCTATGATTTTCTTAAAAGAGATGCTACTCTTTTGGCTACGAATCTTGCTCTTGTAAGGGCAGATGTTTCTAGGCTTCCATTTGCATCAGGTTCAGTCGATGCAGTCCATGCCGGTGCAGCACTGCACTGTTGGCCCTCTCCTTCAAATGCTGTTGCTGAAATCACTCGTGTATTACGAAGTGGTGGTGTCTTTGTTGGAACCACTTTTCTGCGGTATACTTCATCCACTCCCTGGTATATCAGGCCTTTCAGAGAGAGGACTGCTCAGAGCTACAGCTACCTAACGGAGGAAGAGATACGGGACTTGTGTACATCATGTGGTCTCACAAACTACTCGAGCAAAGTTCAGCAATCTTTCATCATGTTTTCTGCTCAGAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

528

Amino Acids

58.84

Weight (kDa)

8.69

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubie_methyltran PF01209 99 - 221 2.2e-07 ubiE/COQ5 methyltransferase family
Methyltransf_11 PF08241 109 - 218 7.5e-16 Methyltransferase domain
Methyltransf_25 PF13649 109 - 215 1.3e-10 Methyltransferase domain
Methyltransf_12 PF08242 109 - 217 1.3e-07 Methyltransferase domain
Ubie_methyltran PF01209 358 - 470 3.1e-11 ubiE/COQ5 methyltransferase family
Methyltransf_23 PF13489 360 - 513 6.1e-07 Methyltransferase domain
Methyltransf_11 PF08241 366 - 466 5.6e-20 Methyltransferase domain
Methyltransf_25 PF13649 366 - 463 2.8e-16 Methyltransferase domain
Methyltransf_31 PF13847 366 - 470 2.4e-11 Methyltransferase domain
Methyltransf_12 PF08242 366 - 465 2.4e-11 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77180 AT1G77180 AT1G77180
fragaria_vesca FvH4_1g05870 FvH4_1g05870
malus_domestica MD02G1060800.v1.1 MD15G1194300.v1.1
prunus_persica Prupe.6G190500_v2.0.a1
pyrus_communis pycom02g04990 pycom15g17390
rosa_chinensis RchiOBHm_Chr2g0091531 RchiOBHm_Chr2g0091611
rosa_laevigata RLG00000016233
rosa_multiflora Rmu_sc0002407.1_g000004
rosa_roxburghii Rroxscaffold_2G00149960
rosa_rugosa Rorug02G0018500
rosa_samantha Rh2AG063700 Rh2BG063100 Rh2CG064800 Rh2DG063200
rosa_wichuraiana Rw2G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 1002
AccB7I CCANNNNNTGG 1 cut(s) 1434
AccI GTMKAC 1 cut(s) 1418
AccII CGCG 2 cut(s) 356, 1079
AciI CCGC 6 cut(s) 670, 791, 1077, 1079, 1086, 1414
AclWI GGATC 3 cut(s) 24, 135, 192
AcoI YGGCCR 1 cut(s) 590
AcsI RAATTY 3 cut(s) 275, 1009, 1133
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 1003
AfaI GTAC 4 cut(s) 158, 688, 929, 1513
AfiI CCNNNNNNNGG 3 cut(s) 375, 1434, 1489
AgsI TTSAA 8 cut(s) 151, 164, 684, 703, 850, 922, 935, 1347
AjnI CCWGG 5 cut(s) 259, 692, 822, 1030, 1433
AluBI AGCT 7 cut(s) 336, 726, 750, 947, 1107, 1473, 1479
AluI AGCT 7 cut(s) 336, 726, 750, 947, 1107, 1473, 1479
Alw21I GWGCWC 2 cut(s) 728, 734
Alw26I GTCTC 2 cut(s) 444, 1529
AlwI GGATC 3 cut(s) 24, 135, 192
AlwNI CAGNNNCTG 2 cut(s) 266, 1037
Ama87I CYCGRG 3 cut(s) 727, 751, 1537
AoxI GGCC 4 cut(s) 590, 805, 1334, 1445
ApeKI GCWGC 2 cut(s) 575, 1319
ApoI RAATTY 3 cut(s) 275, 1009, 1133
AspLEI GCGC 3 cut(s) 575, 1005, 1171
AspS9I GGNCC 8 cut(s) 263, 378, 516, 657, 806, 898, 1034, 1335
AvaI CYCGRG 3 cut(s) 727, 751, 1537
AvaII GGWCC 6 cut(s) 263, 378, 516, 657, 898, 1034
BalI TGGCCA 1 cut(s) 592
BanI GGYRCC 1 cut(s) 1002
BanII GRGCYC 2 cut(s) 728, 971
BauI CACGAG 2 cut(s) 624, 1368
Bbv12I GWGCWC 2 cut(s) 728, 734
BbvI GCAGC 2 cut(s) 562, 1331
BccI CCATC 2 cut(s) 245, 601
BciT130I CCWGG 5 cut(s) 261, 694, 824, 1032, 1435
BcoDI GTCTC 2 cut(s) 444, 1529
BfaI CTAG 5 cut(s) 528, 675, 948, 1094, 1272
BfmI CTRYAG 3 cut(s) 15, 489, 1474
BfoI RGCGCY 3 cut(s) 576, 1006, 1172
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 576, 1320
BlsI GCNGC 2 cut(s) 577, 1321
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 5 cut(s) 261, 694, 824, 1032, 1435
Bme18I GGWCC 6 cut(s) 263, 378, 516, 657, 898, 1034
BmeT110I CYCGRG 3 cut(s) 727, 751, 1537
BmgT120I GGNCC 8 cut(s) 263, 378, 516, 657, 806, 898, 1034, 1335
BmiI GGNNCC 5 cut(s) 379, 658, 968, 1004, 1402
BmrFI CCNGG 5 cut(s) 261, 694, 824, 1032, 1435
BmrI ACTGGG 1 cut(s) 770
BmsI GCATC 5 cut(s) 547, 654, 1213, 1291, 1295
BmuI ACTGGG 1 cut(s) 770
BplI GAGNNNNNCTC 4 cut(s) 710, 742, 1450, 1482
BpmI CTGGAG 2 cut(s) 410, 1179
Bpu10I CCTNAGC 2 cut(s) 288, 1059
BsaHI GRCGYC 1 cut(s) 1003
BsaI GGTCTC 2 cut(s) 444, 1529
BsaJI CCNNGG 3 cut(s) 259, 1077, 1433
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 1434, 1489
Bse118I RCCGGY 2 cut(s) 569, 1313
Bse1I ACTGG 6 cut(s) 105, 173, 427, 776, 817, 978
Bse3DI GCAATG 2 cut(s) 47, 578
BseBI CCWGG 5 cut(s) 261, 694, 824, 1032, 1435
BseDI CCNNGG 3 cut(s) 259, 1077, 1433
BseGI GGATG 3 cut(s) 334, 1105, 1424
BseLI CCNNNNNNNGG 3 cut(s) 375, 1434, 1489
BseMI GCAATG 2 cut(s) 47, 578
BseMII CTCAG 5 cut(s) 174, 302, 945, 1073, 1481
BseNI ACTGG 6 cut(s) 105, 173, 427, 776, 817, 978
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 2 cut(s) 562, 1331
BseYI CCCAGC 2 cut(s) 914, 943
BsgI GTGCAG 2 cut(s) 1310, 1338
Bsh1236I CGCG 2 cut(s) 356, 1079
BshFI GGCC 4 cut(s) 592, 807, 1336, 1447
BshNI GGYRCC 1 cut(s) 1002
BsiHKAI GWGCWC 2 cut(s) 728, 734
BsiHKCI CYCGRG 3 cut(s) 727, 751, 1537
BsiSI CCGG 2 cut(s) 570, 1314
BslFI GGGAC 3 cut(s) 391, 670, 1517
BslI CCNNNNNNNGG 3 cut(s) 375, 1434, 1489
BsmAI GTCTC 2 cut(s) 444, 1529
BsmFI GGGAC 3 cut(s) 391, 670, 1517
BsnI GGCC 4 cut(s) 592, 807, 1336, 1447
Bso31I GGTCTC 2 cut(s) 444, 1529
BsoBI CYCGRG 3 cut(s) 727, 751, 1537
Bsp1286I GDGCHC 3 cut(s) 728, 734, 971
Bsp1407I TGTACA 1 cut(s) 1511
Bsp143I GATC 4 cut(s) 29, 127, 197, 495
Bsp68I TCGCGA 1 cut(s) 356
BspACI CCGC 6 cut(s) 670, 791, 1077, 1079, 1086, 1414
BspANI GGCC 4 cut(s) 592, 807, 1336, 1447
BspCNI CTCAG 5 cut(s) 175, 301, 946, 1072, 1480
BspFNI CGCG 2 cut(s) 356, 1079
BspLI GGNNCC 5 cut(s) 379, 658, 968, 1004, 1402
BspMAI CTGCAG 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 3 cut(s) 24, 135, 192
BspQI GCTCTTC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 1002
BspTNI GGTCTC 2 cut(s) 444, 1529
BsrDI GCAATG 2 cut(s) 47, 578
BsrFI RCCGGY 2 cut(s) 569, 1313
BsrGI TGTACA 1 cut(s) 1511
BsrI ACTGG 6 cut(s) 105, 173, 427, 776, 817, 978
BssAI RCCGGY 2 cut(s) 569, 1313
BssECI CCNNGG 3 cut(s) 259, 1077, 1433
BssMI GATC 4 cut(s) 29, 127, 197, 495
BssNAI GTATAC 1 cut(s) 1419
BssNI GRCGYC 1 cut(s) 1003
BssSI CACGAG 2 cut(s) 624, 1368
Bst1107I GTATAC 1 cut(s) 1419
Bst2BI CACGAG 2 cut(s) 624, 1368
Bst2UI CCWGG 5 cut(s) 261, 694, 824, 1032, 1435
Bst4CI ACNGT 4 cut(s) 136, 907, 1200, 1331
Bst6I CTCTTC 3 cut(s) 716, 1038, 1488
BstACI GRCGYC 1 cut(s) 1003
BstAPI GCANNNNNTGC 2 cut(s) 87, 1310
BstAUI TGTACA 1 cut(s) 1511
BstC8I GCNNGC 3 cut(s) 54, 571, 590
BstDEI CTNAG 6 cut(s) 183, 288, 954, 1059, 1467, 1575
BstDSI CCRYGG 1 cut(s) 1077
BstENI CCTNNNNNAGG 1 cut(s) 1487
BstF5I GGATG 3 cut(s) 334, 1105, 1424
BstFNI CGCG 2 cut(s) 356, 1079
BstH2I RGCGCY 3 cut(s) 576, 1006, 1172
BstHHI GCGC 3 cut(s) 575, 1005, 1171
BstKTI GATC 4 cut(s) 32, 130, 200, 498
BstMAI GTCTC 2 cut(s) 444, 1529
BstMBI GATC 4 cut(s) 29, 127, 197, 495
BstMWI GCNNNNNNNGC 8 cut(s) 87, 566, 575, 589, 780, 1310, 1319, 1333
BstNI CCWGG 5 cut(s) 261, 694, 824, 1032, 1435
BstSCI CCNGG 5 cut(s) 259, 692, 822, 1030, 1433
BstSFI CTRYAG 3 cut(s) 15, 489, 1474
BstUI CGCG 2 cut(s) 356, 1079
BstV1I GCAGC 2 cut(s) 562, 1331
BstX2I RGATCY 3 cut(s) 29, 127, 197
BstYI RGATCY 3 cut(s) 29, 127, 197
BstZ17I GTATAC 1 cut(s) 1419
BsuRI GGCC 4 cut(s) 592, 807, 1336, 1447
BtgI CCRYGG 1 cut(s) 1077
BtsCI GGATG 3 cut(s) 334, 1105, 1424
BtsI GCAGTG 3 cut(s) 498, 583, 1322
BtuMI TCGCGA 1 cut(s) 356
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 3 cut(s) 54, 571, 590
CaiI CAGNNNCTG 2 cut(s) 266, 1037
CfoI GCGC 3 cut(s) 575, 1005, 1171
Cfr10I RCCGGY 2 cut(s) 569, 1313
Cfr13I GGNCC 8 cut(s) 263, 378, 516, 657, 806, 898, 1034, 1335
Cfr42I CCGCGG 1 cut(s) 1080
Csp6I GTAC 4 cut(s) 157, 687, 928, 1512
CviAII CATG 8 cut(s) 6, 205, 546, 566, 771, 1310, 1518, 1564
CviQI GTAC 4 cut(s) 157, 687, 928, 1512
DdeI CTNAG 6 cut(s) 183, 288, 954, 1059, 1467, 1575
DinI GGCGCC 1 cut(s) 1004
DpnI GATC 4 cut(s) 31, 129, 199, 497
DpnII GATC 4 cut(s) 29, 127, 197, 495
DraI TTTAAA 4 cut(s) 280, 301, 1051, 1072
EaeI YGGCCR 1 cut(s) 590
Eam1104I CTCTTC 3 cut(s) 716, 1038, 1488
EarI CTCTTC 3 cut(s) 716, 1038, 1488
Ecl136II GAGCTC 1 cut(s) 726
Eco147I AGGCCT 1 cut(s) 1447
Eco24I GRGCYC 2 cut(s) 728, 971
Eco31I GGTCTC 2 cut(s) 444, 1529
Eco47I GGWCC 6 cut(s) 263, 378, 516, 657, 898, 1034
Eco53kI GAGCTC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 3 cut(s) 727, 751, 1537
EcoICRI GAGCTC 1 cut(s) 726
EcoNI CCTNNNNNAGG 1 cut(s) 1487
EcoO109I RGGNCCY 3 cut(s) 263, 378, 1034
EcoRII CCWGG 5 cut(s) 259, 692, 822, 1030, 1433
EcoT38I GRGCYC 2 cut(s) 728, 971
EgeI GGCGCC 1 cut(s) 1004
EheI GGCGCC 1 cut(s) 1004
FaeI CATG 8 cut(s) 9, 208, 549, 569, 774, 1313, 1521, 1567
FaqI GGGAC 3 cut(s) 391, 670, 1517
FatI CATG 8 cut(s) 5, 204, 545, 565, 770, 1309, 1517, 1563
FblI GTMKAC 1 cut(s) 1418
Fnu4HI GCNGC 2 cut(s) 576, 1320
FokI GGATG 3 cut(s) 341, 1112, 1411
FriOI GRGCYC 2 cut(s) 728, 971
Fsp4HI GCNGC 2 cut(s) 576, 1320
FspBI CTAG 5 cut(s) 528, 675, 948, 1094, 1272
GlaI GCGC 3 cut(s) 574, 1004, 1170
GluI GCNGC 2 cut(s) 576, 1320
GsaI CCCAGC 2 cut(s) 918, 947
GsuI CTGGAG 2 cut(s) 410, 1179
HaeII RGCGCY 3 cut(s) 576, 1006, 1172
HaeIII GGCC 4 cut(s) 592, 807, 1336, 1447
HapII CCGG 2 cut(s) 570, 1314
HhaI GCGC 3 cut(s) 575, 1005, 1171
Hin1I GRCGYC 1 cut(s) 1003
Hin1II CATG 8 cut(s) 9, 208, 549, 569, 774, 1313, 1521, 1567
Hin6I GCGC 3 cut(s) 573, 1003, 1169
HinP1I GCGC 3 cut(s) 573, 1003, 1169
HincII GTYRAC 1 cut(s) 940
HindII GTYRAC 1 cut(s) 940
HinfI GANTC 2 cut(s) 363, 1243
HpaII CCGG 2 cut(s) 570, 1314
Hpy166II GTNNAC 3 cut(s) 940, 1419, 1512
Hpy188I TCNGA 7 cut(s) 412, 1147, 1183, 1196, 1454, 1470, 1578
Hpy188III TCNNGA 8 cut(s) 193, 266, 290, 355, 387, 1037, 1061, 1158
Hpy8I GTNNAC 3 cut(s) 940, 1419, 1512
HpyAV CCTTC 7 cut(s) 211, 220, 305, 609, 690, 1076, 1353
HpyCH4III ACNGT 4 cut(s) 136, 907, 1200, 1331
HpyCH4IV ACGT 2 cut(s) 159, 930
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 566, 575, 589, 780, 1310, 1319, 1333
HpyF3I CTNAG 6 cut(s) 183, 288, 954, 1059, 1467, 1575
HpySE526I ACGT 2 cut(s) 159, 930
Hsp92I GRCGYC 1 cut(s) 1003
Hsp92II CATG 8 cut(s) 9, 208, 549, 569, 774, 1313, 1521, 1567
HspAI GCGC 3 cut(s) 573, 1003, 1169
KasI GGCGCC 1 cut(s) 1002
KroI GCCGGC 1 cut(s) 569
KroNI GCCGGC 1 cut(s) 571
KspI CCGCGG 1 cut(s) 1080
Kzo9I GATC 4 cut(s) 29, 127, 197, 495
LguI GCTCTTC 1 cut(s) 716
LmnI GCTCC 2 cut(s) 966, 1197
Lsp1109I GCAGC 2 cut(s) 562, 1331
LweI GCATC 5 cut(s) 547, 654, 1213, 1291, 1295
MaeI CTAG 5 cut(s) 528, 675, 948, 1094, 1272
MaeII ACGT 2 cut(s) 159, 930
MaeIII GTNAC 4 cut(s) 43, 136, 863, 907
MalI GATC 4 cut(s) 31, 129, 199, 497
MboI GATC 4 cut(s) 29, 127, 197, 495
MboII GAAGA 6 cut(s) 39, 163, 284, 733, 1055, 1505
MflI RGATCY 3 cut(s) 29, 127, 197
MhlI GDGCHC 3 cut(s) 728, 734, 971
MlsI TGGCCA 1 cut(s) 592
MluCI AATT 5 cut(s) 275, 460, 507, 1009, 1133
MluNI TGGCCA 1 cut(s) 592
Mly113I GGCGCC 1 cut(s) 1003
MmeI TCCRAC 3 cut(s) 627, 1219, 1378
MnlI CCTC 7 cut(s) 507, 709, 989, 1122, 1348, 1452, 1483
Mox20I TGGCCA 1 cut(s) 592
MroNI GCCGGC 1 cut(s) 569
MscI TGGCCA 1 cut(s) 592
MseI TTAA 9 cut(s) 11, 168, 279, 300, 482, 506, 1050, 1071, 1215
MslI CAYNNNNRTG 1 cut(s) 1314
Msp20I TGGCCA 1 cut(s) 592
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 2 cut(s) 570, 1314
MspR9I CCNGG 5 cut(s) 261, 694, 824, 1032, 1435
MvaI CCWGG 5 cut(s) 261, 694, 824, 1032, 1435
MvnI CGCG 2 cut(s) 356, 1079
MwoI GCNNNNNNNGC 8 cut(s) 87, 566, 575, 589, 780, 1310, 1319, 1333
NaeI GCCGGC 1 cut(s) 571
NarI GGCGCC 1 cut(s) 1003
NdeII GATC 4 cut(s) 29, 127, 197, 495
NgoMIV GCCGGC 1 cut(s) 569
NlaIII CATG 8 cut(s) 9, 208, 549, 569, 774, 1313, 1521, 1567
NlaIV GGNNCC 5 cut(s) 379, 658, 968, 1004, 1402
NmuCI GTSAC 1 cut(s) 863
NruI TCGCGA 1 cut(s) 356
PaeR7I CTCGAG 2 cut(s) 727, 1537
PceI AGGCCT 1 cut(s) 1447
PciSI GCTCTTC 1 cut(s) 716
PcsI WCGNNNNNNNCGW 2 cut(s) 631, 1375
PdiI GCCGGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 363, 1243
PflMI CCANNNNNTGG 1 cut(s) 1434
PfoI TCCNGGA 1 cut(s) 692
PkrI GCNGC 2 cut(s) 577, 1321
PluTI GGCGCC 1 cut(s) 1006
PpuMI RGGWCCY 3 cut(s) 263, 378, 1034
Psp124BI GAGCTC 1 cut(s) 728
Psp5II RGGWCCY 3 cut(s) 263, 378, 1034
Psp6I CCWGG 5 cut(s) 259, 692, 822, 1030, 1433
PspFI CCCAGC 2 cut(s) 914, 943
PspGI CCWGG 5 cut(s) 259, 692, 822, 1030, 1433
PspN4I GGNNCC 5 cut(s) 379, 658, 968, 1004, 1402
PspPI GGNCC 8 cut(s) 263, 378, 516, 657, 806, 898, 1034, 1335
PspPPI RGGWCCY 3 cut(s) 263, 378, 1034
PspXI VCTCGAGB 2 cut(s) 727, 1537
PsrI GAACNNNNNNTAC 2 cut(s) 780, 812
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 2 cut(s) 266, 1037
PsuI RGATCY 3 cut(s) 29, 127, 197
RruI TCGCGA 1 cut(s) 356
RsaI GTAC 4 cut(s) 158, 688, 929, 1513
RsaNI GTAC 4 cut(s) 157, 687, 928, 1512
RseI CAYNNNNRTG 1 cut(s) 1314
SacI GAGCTC 1 cut(s) 728
SacII CCGCGG 1 cut(s) 1080
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 9 cut(s) 11, 168, 279, 300, 482, 506, 1050, 1071, 1215
SatI GCNGC 2 cut(s) 576, 1320
Sau3AI GATC 4 cut(s) 29, 127, 197, 495
Sau96I GGNCC 8 cut(s) 263, 378, 516, 657, 806, 898, 1034, 1335
ScaI AGTACT 1 cut(s) 688
ScrFI CCNGG 5 cut(s) 261, 694, 824, 1032, 1435
SduI GDGCHC 3 cut(s) 728, 734, 971
SfaNI GCATC 5 cut(s) 547, 654, 1213, 1291, 1295
SfcI CTRYAG 3 cut(s) 15, 489, 1474
SfoI GGCGCC 1 cut(s) 1004
Sfr274I CTCGAG 2 cut(s) 727, 1537
Sfr303I CCGCGG 1 cut(s) 1080
SgrBI CCGCGG 1 cut(s) 1080
SinI GGWCC 6 cut(s) 263, 378, 516, 657, 898, 1034
SlaI CTCGAG 2 cut(s) 727, 1537
SmiMI CAYNNNNRTG 1 cut(s) 1314
SmlI CTYRAG 2 cut(s) 727, 1537
SmoI CTYRAG 2 cut(s) 727, 1537
Sse9I AATT 5 cut(s) 275, 460, 507, 1009, 1133
SseBI AGGCCT 1 cut(s) 1447
SsiI CCGC 6 cut(s) 670, 791, 1077, 1079, 1086, 1414
SspDI GGCGCC 1 cut(s) 1002
SspMI CTAG 5 cut(s) 528, 675, 948, 1094, 1272
SstI GAGCTC 1 cut(s) 728
StuI AGGCCT 1 cut(s) 1447
StyD4I CCNGG 5 cut(s) 259, 692, 822, 1030, 1433
TaaI ACNGT 4 cut(s) 136, 907, 1200, 1331
TaiI ACGT 2 cut(s) 162, 933
TaqI TCGA 5 cut(s) 75, 728, 1127, 1299, 1538
TaqII GACCGA 1 cut(s) 533
TasI AATT 5 cut(s) 275, 460, 507, 1009, 1133
TatI WGTACW 2 cut(s) 686, 1511
TfiI GAWTC 2 cut(s) 363, 1243
Tru1I TTAA 9 cut(s) 11, 168, 279, 300, 482, 506, 1050, 1071, 1215
Tru9I TTAA 9 cut(s) 11, 168, 279, 300, 482, 506, 1050, 1071, 1215
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 2 cut(s) 575, 1319
Tsp45I GTSAC 1 cut(s) 863
TspGWI ACGGA 1 cut(s) 1502
Van91I CCANNNNNTGG 1 cut(s) 1434
VpaK11BI GGWCC 6 cut(s) 263, 378, 516, 657, 898, 1034
XagI CCTNNNNNAGG 1 cut(s) 1487
XapI RAATTY 3 cut(s) 275, 1009, 1133
XhoI CTCGAG 2 cut(s) 727, 1537
XmiI GTMKAC 1 cut(s) 1418
XspI CTAG 5 cut(s) 528, 675, 948, 1094, 1272
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.