RchiOBHm_Chr2g0091531

SNW SKI-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010126
Physical Location & Seq
Forward (+)
5185240 .. 5187697
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46670

Sequence Viewer

Length: 1785 bp
ATGGCGGCTCTGAAGGAGCTACTTCCGCCAGCGAAATCAACCGCCGCCACTTATTATGACCACTCGAACGATCCGTGGTTCAAGCAGCGGTTCAGTGCAGCTGCCGAGGCCGAAAAGGCTGCTGTGGTGAAGCCCAAGCCTGTGCCTCCGTATCAGAAGCGTCAGGGTTTTGTTCCGAGGAAGGTAGAGGACTTTGGGGATGGCGGTGCGTTCCCAGAGATTCATATTGCTCAGTACCCGCTTGGCATGGGCAGGGACAAGTCGGCCAAGCCCGGGAGTAAGGTTCTTCCGGTGACTGTTGATTCGAGGGGGAACATTTCGTATGATGCTATTGTTAAGCAGAATGAGAATTCAAGGAAGATTGTGTATTCCCAGCATAAGGATATTGTGCCGAAGATTTTGAAGAATGAGGAAGATGCGATGAGTGAGGAGGAGGATGAGGAGTTGCAGAAGGAGATTGAAGAGACGACAGCAGAGACAAAAGCTGCGCTTGAGAAGATTGTGAATGTGAGATTGAGCGCTGCGCAGCCGAAGAATGTAGCCACACAGTCGTCTGATTCAAAGTTTATCAAGTATAAGCCATCTCAGAAGTCATTGGCTTTTAATTCTGGTGCCAAGGAGAGGATTATTAGGATGGTGGAGATGCCTGTTGACCCACTTGAGCCTCCCAAGTTCAAGCATAAGCGTGTTCCAAGGGCTTCCGGGTCCCCACCTGTGCCAGTCCTGCATTCCCCTCCTCGGCCGGTGTCTGTGAAAGATCAGCAGGATTGGAAAATTCCGCCTTGCATTTCAAACTGGAAGAACCCAAAAGGGTATACAATCCCATTGGACAAACGTCTAGCTGCTGATGGGAGAGGCCTCCAAGATGTTCAGATTAATGATAATTTTGCAAAGCTTTCTGAGTCTTTGTATGTAGCAGAGCAGAAGGCTAGGGACGCAGTTGAATTGAGATCTAAAGTTCAGAGGGAGATGATGCAGAAGGAGAAGGATAGGAAAGAGCAGGAGCTGCGGGCTTTAGCTCAAAAAGCTCGTTCTGAGAGAACAGGAGCTGCACCCCCAGCTTCCTTTGCAATGCCTTCTGAGAGAGCGGGCATGGATACTGATAGAAGAGGGGATTATGAGCGTCCAAGGGAAAAGGAGATGGATTACCCGAAGGAGACAAGAGAGGAGAAAGAACAGAGGCTGCAGCGGGAGAAGATCCGTGAGGAGCGACGCCGAGAGAGGGAAAGGGAGAGAAGGTTGGAAGCCAAAGATGCTGCAATGGGAAAGAAGAGTCGCCCTTGGCATGGCTTCTGCAGGAGCAGGAAGAGGGGAGAGGTTATGTATGACCAGAGGCTGTTCAACCAGGAGAAGGGAATGGACTCTGGGTTTGCTACTGATGACCAGTACAATGTTTATGACAAGGGCTTGTTCACTGCTCAGCCTACCTTGTCCACTTTATACAGGCCGAAGAAGGATACTGATGCTGAGGTGTATGGAGGGGCTGATGAGCAATTGGATAAGATTATGAAGACTGATCGCTTTAAACCTGACAAAGGATTCTCAGGAGCATCTGAGAAGGCTGGTGGTCGGAGAGATGGACCAGTTGAATTTGAGAAGGATGCTGAAGAAGCTGATCCATTTGGTCTCGATCAGTTTTTGACAGAGGTAAAGAAGGGTAAGAAGGCCATGGAAAAAGTTGGCAGAGGGGGGACAATGAAAGCAACTGCTGGGTCTTCAATGCGAGATAGCTCTGACGTGGGTTCCGGAAGAAGTCGTATTGGGTTTGAAAGGGGGGGTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000350 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003714 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005730 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008380 GO:0008630 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010555 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0010646 GO:0010647 GO:0010720 GO:0012501 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0017015 GO:0019219 GO:0019222 GO:0022008 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0030511 GO:0030522 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032104 GO:0032107 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033120 GO:0033554 GO:0033993 GO:0034399 GO:0034622 GO:0034641 GO:0035257 GO:0035556 GO:0036002 GO:0042221 GO:0042752 GO:0042771 GO:0042809 GO:0042974 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0048024 GO:0048026 GO:0048384 GO:0048385 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050685 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051427 GO:0051569 GO:0051571 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070562 GO:0071007 GO:0071013 GO:0071014 GO:0071141 GO:0071704 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097305 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:1903508 GO:1903844 GO:1903846 GO:1905269 GO:1990904 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03040 ko04330 ko05169 ko05203 map03040 map04330 map05169 map05203
Pfam Domains
Protein Families
SKIP_SNW

Protein Analysis

594

Amino Acids

67.16

Weight (kDa)

9.38

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKIP_SNW PF02731 188 - 347 7.2e-72 SKIP/SNW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77180 AT1G77180 AT1G77180
fragaria_vesca FvH4_1g05870 FvH4_1g05870
malus_domestica MD02G1060800.v1.1 MD15G1194300.v1.1
prunus_persica Prupe.6G190500_v2.0.a1
pyrus_communis pycom02g04990 pycom15g17390
rosa_chinensis RchiOBHm_Chr2g0091531 RchiOBHm_Chr2g0091611
rosa_laevigata RLG00000016233
rosa_multiflora Rmu_sc0002407.1_g000004
rosa_roxburghii Rroxscaffold_2G00149960
rosa_rugosa Rorug02G0018500
rosa_samantha Rh2AG063700 Rh2BG063100 Rh2CG064800 Rh2DG063200
rosa_wichuraiana Rw2G005670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 525
AccB1I GGYRCC 1 cut(s) 611
AccBSI CCGCTC 1 cut(s) 1088
AccI GTMKAC 1 cut(s) 815
AccIII TCCGGA 1 cut(s) 1745
AclWI GGATC 3 cut(s) 65, 1192, 1610
AcoI YGGCCR 2 cut(s) 264, 740
AcsI RAATTY 3 cut(s) 349, 774, 1589
AcuI CTGAAG 2 cut(s) 32, 1626
AcyI GRCGYC 1 cut(s) 1213
AfaI GTAC 2 cut(s) 236, 1388
AfeI AGCGCT 1 cut(s) 520
AfiI CCNNNNNNNGG 8 cut(s) 273, 379, 621, 738, 1222, 1286, 1351, 1535
AjiI CACGTC 1 cut(s) 1738
AjnI CCWGG 1 cut(s) 1344
Alw26I GTCTC 4 cut(s) 458, 470, 1151, 1631
AlwI GGATC 3 cut(s) 65, 1192, 1610
AlwNI CAGNNNCTG 4 cut(s) 1006, 1049, 1183, 1336
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 1745
Aor51HI AGCGCT 1 cut(s) 520
AoxI GGCC 6 cut(s) 108, 264, 740, 856, 1445, 1665
ApoI RAATTY 3 cut(s) 349, 774, 1589
ArsI GACNNNNNNTTYG 4 cut(s) 286, 318, 1352, 1384
AseI ATTAAT 1 cut(s) 876
AspLEI GCGC 3 cut(s) 490, 521, 526
AspS9I GGNCC 2 cut(s) 705, 1580
AsuC2I CCSGG 3 cut(s) 273, 274, 703
AsuHPI GGTGA 2 cut(s) 139, 304
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 705, 1580
BanI GGYRCC 1 cut(s) 611
BbsI GAAGAC 2 cut(s) 1517, 1707
BbvCI CCTCAGC 1 cut(s) 1467
BccI CCATC 6 cut(s) 194, 589, 628, 842, 1135, 1571
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 1346
BciVI GTATCC 2 cut(s) 1090, 1450
BcnI CCSGG 3 cut(s) 273, 274, 703
BcoDI GTCTC 4 cut(s) 458, 470, 1151, 1631
BfaI CTAG 2 cut(s) 839, 930
BfmI CTRYAG 2 cut(s) 1184, 1294
BfoI RGCGCY 1 cut(s) 522
BfuI GTATCC 2 cut(s) 1090, 1450
BglI GCCNNNNNGGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 950
BlpI GCTNAGC 1 cut(s) 1419
Bme1390I CCNGG 4 cut(s) 273, 274, 703, 1346
Bme18I GGWCC 2 cut(s) 705, 1580
BmeT110I CYCGRG 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 1738
BmgT120I GGNCC 2 cut(s) 705, 1580
BmiI GGNNCC 4 cut(s) 613, 706, 707, 1744
BmrFI CCNGG 4 cut(s) 273, 274, 703, 1346
BmsI GCATC 8 cut(s) 316, 406, 633, 963, 1243, 1453, 1559, 1591
BoxI GACNNNNGTC 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 1517, 1707
Bpu10I CCTNAGC 1 cut(s) 1467
Bpu1102I GCTNAGC 1 cut(s) 1419
BpuEI CTTGAG 2 cut(s) 512, 680
BpuMI CCSGG 3 cut(s) 273, 274, 703
BsaHI GRCGYC 1 cut(s) 1213
BsaI GGTCTC 1 cut(s) 1631
BsaWI WCCGGW 2 cut(s) 289, 1745
BsaXI ACNNNNNCTCC 2 cut(s) 1223, 1253
Bsc4I CCNNNNNNNGG 8 cut(s) 273, 379, 621, 738, 1222, 1286, 1351, 1535
Bse118I RCCGGY 1 cut(s) 742
Bse1I ACTGG 4 cut(s) 719, 800, 1384, 1583
Bse3DI GCAATG 2 cut(s) 1077, 1266
BseAI TCCGGA 1 cut(s) 1745
BseBI CCWGG 1 cut(s) 1346
BseGI GGATG 4 cut(s) 205, 442, 639, 1606
BseLI CCNNNNNNNGG 8 cut(s) 273, 379, 621, 738, 1222, 1286, 1351, 1535
BseMI GCAATG 2 cut(s) 1077, 1266
BseMII CTCAG 9 cut(s) 245, 599, 891, 1026, 1071, 1433, 1458, 1545, 1557
BseNI ACTGG 4 cut(s) 719, 800, 1384, 1583
BseRI GAGGAG 6 cut(s) 443, 446, 455, 726, 1181, 1220
BseX3I CGGCCG 1 cut(s) 740
BseYI CCCAGC 3 cut(s) 372, 1057, 1709
BsgI GTGCAG 2 cut(s) 117, 1035
Bsh1285I CGRYCG 1 cut(s) 743
BshFI GGCC 6 cut(s) 110, 266, 742, 858, 1447, 1667
BshNI GGYRCC 1 cut(s) 611
BsiEI CGRYCG 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 5 cut(s) 273, 290, 702, 743, 1746
BslFI GGGAC 4 cut(s) 269, 691, 947, 1705
BslI CCNNNNNNNGG 8 cut(s) 273, 379, 621, 738, 1222, 1286, 1351, 1535
BsmAI GTCTC 4 cut(s) 458, 470, 1151, 1631
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 4 cut(s) 269, 691, 947, 1705
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 6 cut(s) 110, 266, 742, 858, 1447, 1667
Bso31I GGTCTC 1 cut(s) 1631
BsoBI CYCGRG 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 1745
Bsp143I GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
Bsp1720I GCTNAGC 1 cut(s) 1419
Bsp19I CCATGG 1 cut(s) 1668
BspANI GGCC 6 cut(s) 110, 266, 742, 858, 1447, 1667
BspCNI CTCAG 9 cut(s) 244, 598, 892, 1027, 1072, 1432, 1459, 1546, 1556
BspEI TCCGGA 1 cut(s) 1745
BspLI GGNNCC 4 cut(s) 613, 706, 707, 1744
BspMAI CTGCAG 2 cut(s) 1188, 1298
BspPI GGATC 3 cut(s) 65, 1192, 1610
BspT107I GGYRCC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 1631
BsrBI CCGCTC 1 cut(s) 1088
BsrDI GCAATG 2 cut(s) 1077, 1266
BsrFI RCCGGY 1 cut(s) 742
BsrI ACTGG 4 cut(s) 719, 800, 1384, 1583
BssAI RCCGGY 1 cut(s) 742
BssMI GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
BssNAI GTATAC 1 cut(s) 816
BssNI GRCGYC 1 cut(s) 1213
BssT1I CCWWGG 5 cut(s) 615, 692, 1127, 1280, 1668
Bst1107I GTATAC 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 1346
Bst4CI ACNGT 2 cut(s) 298, 549
Bst6I CTCTTC 4 cut(s) 456, 1102, 1265, 1301
BstACI GRCGYC 1 cut(s) 1213
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstC8I GCNNGC 3 cut(s) 30, 1011, 1090
BstDEI CTNAG 9 cut(s) 231, 585, 900, 1035, 1080, 1419, 1467, 1543, 1554
BstDSI CCRYGG 2 cut(s) 74, 1668
BstENI CCTNNNNNAGG 1 cut(s) 1533
BstF5I GGATG 4 cut(s) 205, 442, 639, 1606
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 3 cut(s) 490, 521, 526
BstKTI GATC 7 cut(s) 73, 760, 953, 1200, 1519, 1618, 1633
BstMAI GTCTC 4 cut(s) 458, 470, 1151, 1631
BstMBI GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
BstMCI CGRYCG 1 cut(s) 743
BstNI CCWGG 1 cut(s) 1346
BstPAI GACNNNNGTC 1 cut(s) 834
BstSCI CCNGG 4 cut(s) 271, 272, 701, 1344
BstSFI CTRYAG 2 cut(s) 1184, 1294
BstV2I GAAGAC 2 cut(s) 1517, 1707
BstX2I RGATCY 2 cut(s) 950, 1197
BstYI RGATCY 2 cut(s) 950, 1197
BstZ17I GTATAC 1 cut(s) 816
BstZI CGGCCG 1 cut(s) 740
BsuI GTATCC 2 cut(s) 1090, 1450
BsuRI GGCC 6 cut(s) 110, 266, 742, 858, 1447, 1667
BtgI CCRYGG 2 cut(s) 74, 1668
BtgZI GCGATG 1 cut(s) 434
BtrI CACGTC 1 cut(s) 1738
BtsCI GGATG 4 cut(s) 205, 442, 639, 1606
BtsI GCAGTG 1 cut(s) 1413
BtsIMutI CAGTG 2 cut(s) 100, 1413
Cac8I GCNNGC 3 cut(s) 30, 1011, 1090
CaiI CAGNNNCTG 4 cut(s) 1006, 1049, 1183, 1336
CfoI GCGC 3 cut(s) 490, 521, 526
Cfr10I RCCGGY 1 cut(s) 742
Cfr13I GGNCC 2 cut(s) 705, 1580
Cfr9I CCCGGG 1 cut(s) 272
CseI GACGC 4 cut(s) 149, 944, 1112, 1221
Csp6I GTAC 2 cut(s) 235, 1387
CviAII CATG 4 cut(s) 247, 1093, 1286, 1669
CviQI GTAC 2 cut(s) 235, 1387
DdeI CTNAG 9 cut(s) 231, 585, 900, 1035, 1080, 1419, 1467, 1543, 1554
DpnI GATC 7 cut(s) 72, 759, 952, 1199, 1518, 1617, 1632
DpnII GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
DraI TTTAAA 1 cut(s) 1525
EaeI YGGCCR 2 cut(s) 264, 740
EagI CGGCCG 1 cut(s) 740
Eam1104I CTCTTC 4 cut(s) 456, 1102, 1265, 1301
EarI CTCTTC 4 cut(s) 456, 1102, 1265, 1301
EciI GGCGGA 2 cut(s) 15, 768
EclXI CGGCCG 1 cut(s) 740
Eco130I CCWWGG 5 cut(s) 615, 692, 1127, 1280, 1668
Eco147I AGGCCT 1 cut(s) 858
Eco31I GGTCTC 1 cut(s) 1631
Eco47I GGWCC 2 cut(s) 705, 1580
Eco47III AGCGCT 1 cut(s) 520
Eco52I CGGCCG 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 32, 1626
Eco88I CYCGRG 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 1533
EcoO109I RGGNCCY 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 1344
EcoT14I CCWWGG 5 cut(s) 615, 692, 1127, 1280, 1668
ErhI CCWWGG 5 cut(s) 615, 692, 1127, 1280, 1668
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 4 cut(s) 250, 1096, 1289, 1672
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 4 cut(s) 269, 691, 947, 1705
FatI CATG 4 cut(s) 246, 1092, 1285, 1668
FauI CCCGC 4 cut(s) 246, 1002, 1081, 1182
FblI GTMKAC 1 cut(s) 815
FokI GGATG 4 cut(s) 212, 449, 646, 1613
FspBI CTAG 2 cut(s) 839, 930
FspI TGCGCA 1 cut(s) 525
GlaI GCGC 3 cut(s) 489, 520, 525
GsaI CCCAGC 3 cut(s) 376, 1061, 1713
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 6 cut(s) 110, 266, 742, 858, 1447, 1667
HapII CCGG 5 cut(s) 273, 290, 702, 743, 1746
HgaI GACGC 4 cut(s) 149, 944, 1112, 1221
HhaI GCGC 3 cut(s) 490, 521, 526
Hin1I GRCGYC 1 cut(s) 1213
Hin1II CATG 4 cut(s) 250, 1096, 1289, 1672
Hin6I GCGC 3 cut(s) 488, 519, 524
HinP1I GCGC 3 cut(s) 488, 519, 524
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 7 cut(s) 220, 302, 557, 902, 1273, 1361, 1539
HpaII CCGG 5 cut(s) 273, 290, 702, 743, 1746
HphI GGTGA 2 cut(s) 139, 304
Hpy166II GTNNAC 4 cut(s) 652, 816, 1413, 1434
Hpy188III TCNNGA 3 cut(s) 1545, 1628, 1746
Hpy8I GTNNAC 4 cut(s) 652, 816, 1413, 1434
Hpy99I CGWCG 1 cut(s) 1215
HpyCH4III ACNGT 2 cut(s) 298, 549
HpyCH4IV ACGT 2 cut(s) 835, 1737
HpyF3I CTNAG 9 cut(s) 231, 585, 900, 1035, 1080, 1419, 1467, 1543, 1554
HpySE526I ACGT 2 cut(s) 835, 1737
Hsp92I GRCGYC 1 cut(s) 1213
Hsp92II CATG 4 cut(s) 250, 1096, 1289, 1672
HspAI GCGC 3 cut(s) 488, 519, 524
KflI GGGWCCC 1 cut(s) 705
Kpn2I TCCGGA 1 cut(s) 1745
Kzo9I GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
LmnI GCTCC 6 cut(s) 16, 1003, 1046, 1207, 1299, 1547
LweI GCATC 8 cut(s) 316, 406, 633, 963, 1243, 1453, 1559, 1591
MaeI CTAG 2 cut(s) 839, 930
MaeII ACGT 2 cut(s) 835, 1737
MaeIII GTNAC 1 cut(s) 292
MalI GATC 7 cut(s) 72, 759, 952, 1199, 1518, 1617, 1632
MbiI CCGCTC 1 cut(s) 1088
MboI GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
MfeI CAATTG 1 cut(s) 1493
MflI RGATCY 2 cut(s) 950, 1197
MluCI AATT 7 cut(s) 349, 604, 774, 883, 944, 1493, 1589
MlyI GAGTC 3 cut(s) 911, 1282, 1355
MmeI TCCRAC 2 cut(s) 1221, 1550
MroI TCCGGA 1 cut(s) 1745
MseI TTAA 4 cut(s) 336, 603, 876, 1524
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 3 cut(s) 88, 101, 1189
MspI CCGG 5 cut(s) 273, 290, 702, 743, 1746
MspR9I CCNGG 4 cut(s) 273, 274, 703, 1346
MteI GCGCNGCGC 1 cut(s) 522
MunI CAATTG 1 cut(s) 1493
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 1 cut(s) 1346
NciI CCSGG 3 cut(s) 273, 274, 703
NcoI CCATGG 1 cut(s) 1668
NdeII GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
NlaIII CATG 4 cut(s) 250, 1096, 1289, 1672
NlaIV GGNNCC 4 cut(s) 613, 706, 707, 1744
NmeAIII GCCGAG 3 cut(s) 130, 718, 1241
NmuCI GTSAC 1 cut(s) 292
NsbI TGCGCA 1 cut(s) 525
PceI AGGCCT 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 4 cut(s) 220, 302, 557, 1539
PleI GAGTC 3 cut(s) 910, 1281, 1355
PpsI GAGTC 3 cut(s) 910, 1281, 1355
PpuMI RGGWCCY 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 834
PshBI ATTAAT 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 1344
PspFI CCCAGC 3 cut(s) 372, 1057, 1709
PspGI CCWGG 1 cut(s) 1344
PspN4I GGNNCC 4 cut(s) 613, 706, 707, 1744
PspPI GGNCC 2 cut(s) 705, 1580
PspPPI RGGWCCY 1 cut(s) 705
PstI CTGCAG 2 cut(s) 1188, 1298
PstNI CAGNNNCTG 4 cut(s) 1006, 1049, 1183, 1336
PsuI RGATCY 2 cut(s) 950, 1197
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 2 cut(s) 236, 1388
RsaNI GTAC 2 cut(s) 235, 1387
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 4 cut(s) 336, 603, 876, 1524
Sau3AI GATC 7 cut(s) 70, 757, 950, 1197, 1516, 1615, 1630
Sau96I GGNCC 2 cut(s) 705, 1580
SchI GAGTC 3 cut(s) 911, 1282, 1355
ScrFI CCNGG 4 cut(s) 273, 274, 703, 1346
SfaNI GCATC 8 cut(s) 316, 406, 633, 963, 1243, 1453, 1559, 1591
SfcI CTRYAG 2 cut(s) 1184, 1294
SinI GGWCC 2 cut(s) 705, 1580
SmaI CCCGGG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 2 cut(s) 491, 659
SmoI CTYRAG 2 cut(s) 491, 659
Sse9I AATT 7 cut(s) 349, 604, 774, 883, 944, 1493, 1589
SseBI AGGCCT 1 cut(s) 858
SspMI CTAG 2 cut(s) 839, 930
StuI AGGCCT 1 cut(s) 858
StyD4I CCNGG 4 cut(s) 271, 272, 701, 1344
StyI CCWWGG 5 cut(s) 615, 692, 1127, 1280, 1668
TaaI ACNGT 2 cut(s) 298, 549
TaiI ACGT 2 cut(s) 838, 1740
TaqI TCGA 3 cut(s) 65, 305, 1629
TasI AATT 7 cut(s) 349, 604, 774, 883, 944, 1493, 1589
TatI WGTACW 1 cut(s) 1386
TauI GCSGC 2 cut(s) 8, 47
TfiI GAWTC 4 cut(s) 220, 302, 557, 1539
Tru1I TTAA 4 cut(s) 336, 603, 876, 1524
Tru9I TTAA 4 cut(s) 336, 603, 876, 1524
TscAI CASTG 2 cut(s) 100, 1420
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 212, 1523, 1712
TspGWI ACGGA 3 cut(s) 63, 138, 1190
TspMI CCCGGG 1 cut(s) 272
TspRI CASTG 2 cut(s) 100, 1420
VpaK11BI GGWCC 2 cut(s) 705, 1580
VspI ATTAAT 1 cut(s) 876
XagI CCTNNNNNAGG 1 cut(s) 1533
XapI RAATTY 3 cut(s) 349, 774, 1589
XmaI CCCGGG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 815
XspI CTAG 2 cut(s) 839, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.