Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005766

Physical Location & Seq

Genomic Coordinates Forward (+)

4882781 .. 4890554

Gene Structure 7774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1061000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGGAAGCGATACTTCGAGACTGTGTCCAGCACAGTCTCCGTGATTTCATGCACCGGAACGCCATTTTCGTATGCGAACGCCTCTGTGCCGAGTTCCCCTCCGAGACGAATTTACAGTTGTTAGCTGGCTGTTACTTGCAAAGCAACCAAGCTTATGCTGTATATCATATTTTAAAGGGAACACAAGTGGCTCAATGCCGCTACTTGTTTGCACTATCATGCTTTCAGATGGATCTTCTAAGTGAAGCAGAAGCAGCGTTATGTCCTGCTAATGAGCGTGGTGCTGAGGTTCCAAATGGCGCAGCTGGTCATTACCTTTTAGGGCTTATATACAGGTATACTGACAGAAGGAAAAGTGCCATCCATCACTTTAAGCAGGCTTTGACTATTGATCCTTGTATGTGGACTGCTTACGAAGAGCTGTGCATATTAGGTGCTGCTGAAGAAGCAGCTGTAGTTTTTGGTGAAGCTGCCGTTCTTTCCATACAAAAACAGTATCTACATCATGGATTAGCTTCTCAAAGTTTACTTACCCTGAATGAGGACTGCAATTTAGTTTCTGGCAGGAATTTTAGCTCTGAAGATGTTGGCCAGAGACAATTGAAACATGTTCAAGGAAATAATACAAGAGATTTGTCTGGAAATTCTCATGTTAGTTTGGGCGGAGTGTCTGGTCATCCTGTAAATGGCACTTCTGGTTCATCTTTCTTTAACACTCCTTCCCCAATGCCCATGCAGTTGTCAGGTGTTGCTCCACCAGCTCTCTGTAGAATTGGCCAGCCAAATGGCCCAAACCTGAGCACAGGTACCGATAGCTCTCTGAAGTCAAATGTGAGCTCTACAATTCAAGCCCCCAGAAGAAAGTTTGTTGATGAAGGAAAACTCCGCAAGATTTCAAGCAGGTTGTCTTTTGATTCTGGCAACCGGCGGAGCAATAGACTTGCTGCTGAAGCGGGGGCCAACACTAATGTCAGTGCCTCAGTGACAGCCGGAAATGGAACTACCAATTCATCTAAATATCTTGGAAGTTCCAAGCTGAGCTCTGTTGCACGTTCCTTCGCAAATCGTAAGGGGCAGCCATGGCCCAATGAAAATGTTGATGAAGGAATGCGCAATGAGACATATGATGATTCCCGTTCAACAACTGTGACAGTAGCTTCTGGTTTTACTCCTAGTGATACTAGATATCTTGAACAAGAAGGAGCAACCTTGTCAAGTACTGGTGGTATTATCAATGTTTCAAGAGTTGCCACTGGTGCTTCAGAAATATTGAGTCTTTTGAGAACCCTTGGGGAGGGCTATAGACTTTCCTGCATGTACAGATGTCAGGATGCACTCAATGTCTATCTCAAACTTCCATACAAGCATTACAATACAGGATGGGTGCTTTCCCAGGTTGGAAAAGCTTATTGTGAATTGATAGACTATTCAGAAGCTGATCGGGCCTTCAGTCTTGCCCGTCAGGCATCACCTTACAGTTTAGAAGGGATGGATATGTATTCTACAGTTCTTTATCATTTGAAGGAAGATATGAAGTTAAGTTACCTGGCTCAAGAACTGATATCAACGGACCGCTTAGCTCCTCAGTCTTGGGTTGCAATGGGAAATTGCTATAGCTTGCAGAAAGACCATGAAACTGCTCTGAAAAATTTTCAGCGAGCTGTTCAACTTAATCCAAGATTCACATATGCGCATACCCTTTGTGGTCATGAATATGTAGCTCTAGAGGATTTTGAGAATGGAATAAAGAGTTATCAGAACGCACTTCGTATTGATGCAAGGCATTATAACGCCTGGTATGGCCTTGGAATGGTATATCATCGCCAAGAGAAGTTTGAGTTCTCGGAGCATCACTTCCGGACGGCTTTCCAAATCAATTCACGTTCTTCTGTTATTATGACTTATCTTGCCTCAGCATTGCATGCTTTAAAGCGAAGCGAAGAAGCTCTAGTGATGATGGAGAAGGCTATTAGGGCGGACAAGAAGAATCCACTTCCAATGTATCATAAGGCTAGTATACTAATGAGTTTAGAAAAGTTCGATGAAGCTTTAGCGGTCTTAGAGGAGGTTAAAGAATACTCTCCTCGCGAAAGTAGTGTCTACGCTTTGATGGGTAAGATCTATAAGCGGCGTAACATGCATGAGAAAGCAATGCTTCATTTTGGTTATGCATTGGATTTGAAACCATCGGCAACTGATGTCGCTACCATTAAGGCTGACATTGAGAAGTTACATGTACCTGATGAACTAGACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

754

Amino Acids

83.77

Weight (kDa)

6.8

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	16 - 88	1.4e-17	Anaphase-promoting complex, cyclosome, subunit 3
TPR_1	PF00515	529 - 561	1.2e-07	Tetratricopeptide repeat
TPR_11	PF13414	569 - 609	5.7e-07	TPR repeat
TPR_12	PF13424	597 - 662	3.1e-06	Tetratricopeptide repeat
TPR_19	PF14559	642 - 707	1.8e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20000 AT2G20000
fragaria_vesca	FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910
malus_domestica	MD02G1061000.v1.1 MD15G1194500.v1.1
prunus_persica	Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1
pyrus_communis	pycom02g05010 pycom15g17410
rosa_chinensis	RchiOBHm_Chr2g0091551 RchiOBHm_Chr2g0091631
rosa_laevigata	RLG00000016236
rosa_multiflora	Rmu_sc0000897.1_g000018
rosa_roxburghii	Rroxscaffold_2G00149940
rosa_rugosa	Rorug02G0018700 Rorug02G0018700
rosa_samantha	Rh2AG063900 Rh2BG063300 Rh2CG065000 Rh2DG063400
rosa_wichuraiana	Rw2G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1788
Acc16I	TGCGCA	2 cut(s)	1112, 1692
Acc36I	ACCTGC	1 cut(s)	891
Acc65I	GGTACC	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	806
AccI	GTMKAC	3 cut(s)	338, 2017, 2100
AccII	CGCG	1 cut(s)	2088
AccIII	TCCGGA	1 cut(s)	1857
AciI	CCGC	9 cut(s)	199, 663, 886, 928, 953, 1573, 1976, 2054, 2128
AclWI	GGATC	2 cut(s)	240, 386
AcoI	YGGCCR	2 cut(s)	589, 775
AcsI	RAATTY	4 cut(s)	109, 568, 643, 1648
AcuI	CTGAAG	6 cut(s)	462, 600, 842, 969, 1245, 1432
AfaI	GTAC	4 cut(s)	808, 1219, 1319, 2238
AfiI	CCNNNNNNNGG	4 cut(s)	541, 686, 1294, 1810
AflIII	ACRYGT	2 cut(s)	607, 2233
AjnI	CCWGG	3 cut(s)	1392, 1545, 1793
Alw21I	GWGCWC	3 cut(s)	803, 839, 1043
Alw26I	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
AlwI	GGATC	2 cut(s)	240, 386
AlwNI	CAGNNNCTG	1 cut(s)	1436
Aor13HI	TCCGGA	1 cut(s)	1857
AoxI	GGCC	7 cut(s)	589, 775, 787, 957, 1082, 1443, 1801
ApeKI	GCWGC	7 cut(s)	254, 302, 437, 449, 470, 944, 1075
ApoI	RAATTY	4 cut(s)	109, 568, 643, 1648
ArsI	GACNNNNNNTTYG	2 cut(s)	2082, 2114
Asp718I	GGTACC	1 cut(s)	806
AspLEI	GCGC	3 cut(s)	302, 1113, 1693
AspS9I	GGNCC	5 cut(s)	788, 957, 1083, 1443, 1570
AsuHPI	GGTGA	2 cut(s)	476, 1461
AvaII	GGWCC	1 cut(s)	1570
BalI	TGGCCA	2 cut(s)	591, 777
BanI	GGYRCC	1 cut(s)	806
BanII	GRGCYC	2 cut(s)	839, 1043
BarI	GAAGNNNNNNTAC	2 cut(s)	1526, 1558
Bbv12I	GWGCWC	3 cut(s)	803, 839, 1043
BbvCI	CCTCAGC	2 cut(s)	285, 1912
BbvI	GCAGC	7 cut(s)	266, 314, 424, 457, 461, 931, 1087
BccI	CCATC	8 cut(s)	223, 368, 372, 1374, 1483, 1951, 2104, 2194
BceAI	ACGGC	2 cut(s)	458, 1878
BciT130I	CCWGG	3 cut(s)	1394, 1547, 1795
BcoDI	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
BfaI	CTAG	6 cut(s)	1173, 1182, 1724, 1949, 2013, 2249
BfmI	CTRYAG	5 cut(s)	453, 766, 1300, 1503, 1612
BfuAI	ACCTGC	1 cut(s)	891
BglI	GCCNNNNNGGC	1 cut(s)	1463
BglII	AGATCT	1 cut(s)	2118
BisI	GCNGC	9 cut(s)	199, 255, 303, 438, 450, 471, 945, 1076, 2129
BlpI	GCTNAGC	2 cut(s)	1037, 1576
BlsI	GCNGC	9 cut(s)	200, 256, 304, 439, 451, 472, 946, 1077, 2130
BmcAI	AGTACT	1 cut(s)	1219
Bme1390I	CCNGG	3 cut(s)	1394, 1547, 1795
Bme18I	GGWCC	1 cut(s)	1570
BmgT120I	GGNCC	5 cut(s)	788, 957, 1083, 1443, 1570
BmiI	GGNNCC	3 cut(s)	291, 808, 958
BmrFI	CCNGG	3 cut(s)	1394, 1547, 1795
BmsI	GCATC	4 cut(s)	1321, 1475, 1765, 1858
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	3 cut(s)	285, 797, 1912
Bpu1102I	GCTNAGC	2 cut(s)	1037, 1576
BpuEI	CTTGAG	1 cut(s)	1536
BsaJI	CCNNGG	4 cut(s)	1079, 1288, 1392, 1804
BsaWI	WCCGGW	2 cut(s)	54, 1857
Bsc4I	CCNNNNNNNGG	4 cut(s)	541, 686, 1294, 1810
Bse118I	RCCGGY	1 cut(s)	924
Bse1I	ACTGG	2 cut(s)	1225, 1258
Bse3DI	GCAATG	4 cut(s)	1120, 1605, 1916, 2157
BseAI	TCCGGA	1 cut(s)	1857
BseBI	CCWGG	3 cut(s)	1394, 1547, 1795
BseDI	CCNNGG	4 cut(s)	1079, 1288, 1392, 1804
BseGI	GGATG	5 cut(s)	360, 676, 1336, 1385, 1494
BseLI	CCNNNNNNNGG	4 cut(s)	541, 686, 1294, 1810
BseMI	GCAATG	4 cut(s)	1120, 1605, 1916, 2157
BseMII	CTCAG	6 cut(s)	276, 788, 993, 1028, 1598, 1926
BseNI	ACTGG	2 cut(s)	1225, 1258
BseRI	GAGGAG	3 cut(s)	1572, 2073, 2078
BseXI	GCAGC	7 cut(s)	266, 314, 424, 457, 461, 931, 1087
Bsh1236I	CGCG	1 cut(s)	2088
BshFI	GGCC	7 cut(s)	591, 777, 789, 959, 1084, 1445, 1803
BshNI	GGYRCC	1 cut(s)	806
BsiHKAI	GWGCWC	3 cut(s)	803, 839, 1043
BsiSI	CCGG	4 cut(s)	55, 925, 990, 1858
BslI	CCNNNNNNNGG	4 cut(s)	541, 686, 1294, 1810
BsmAI	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
BsmBI	CGTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	1113
BsnI	GGCC	7 cut(s)	591, 777, 789, 959, 1084, 1445, 1803
Bsp1286I	GDGCHC	3 cut(s)	803, 839, 1043
Bsp13I	TCCGGA	1 cut(s)	1857
Bsp1407I	TGTACA	1 cut(s)	1317
Bsp143I	GATC	4 cut(s)	232, 391, 1438, 2118
Bsp1720I	GCTNAGC	2 cut(s)	1037, 1576
Bsp19I	CCATGG	1 cut(s)	1079
Bsp68I	TCGCGA	1 cut(s)	2088
BspACI	CCGC	9 cut(s)	199, 663, 886, 928, 953, 1573, 1976, 2054, 2128
BspANI	GGCC	7 cut(s)	591, 777, 789, 959, 1084, 1445, 1803
BspCNI	CTCAG	6 cut(s)	277, 789, 992, 1029, 1597, 1925
BspEI	TCCGGA	1 cut(s)	1857
BspFNI	CGCG	1 cut(s)	2088
BspHI	TCATGA	1 cut(s)	1708
BspLI	GGNNCC	3 cut(s)	291, 808, 958
BspMI	ACCTGC	1 cut(s)	891
BspPI	GGATC	2 cut(s)	240, 386
BspQI	GCTCTTC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	806
BsrDI	GCAATG	4 cut(s)	1120, 1605, 1916, 2157
BsrFI	RCCGGY	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	1317
BsrI	ACTGG	2 cut(s)	1225, 1258
BssAI	RCCGGY	1 cut(s)	924
BssECI	CCNNGG	4 cut(s)	1079, 1288, 1392, 1804
BssMI	GATC	4 cut(s)	232, 391, 1438, 2118
BssNAI	GTATAC	2 cut(s)	339, 2018
BssT1I	CCWWGG	3 cut(s)	1079, 1288, 1804
Bst1107I	GTATAC	2 cut(s)	339, 2018
Bst2UI	CCWGG	3 cut(s)	1394, 1547, 1795
Bst4CI	ACNGT	8 cut(s)	23, 35, 117, 495, 1147, 1153, 1478, 1507
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	1922
BstAUI	TGTACA	1 cut(s)	1317
BstC8I	GCNNGC	6 cut(s)	127, 378, 779, 1619, 1659, 1923
BstDEI	CTNAG	9 cut(s)	239, 285, 797, 979, 1037, 1576, 1584, 1912, 2059
BstDSI	CCRYGG	1 cut(s)	1079
BstENI	CCTNNNNNAGG	2 cut(s)	539, 1292
BstF5I	GGATG	5 cut(s)	360, 676, 1336, 1385, 1494
BstFNI	CGCG	1 cut(s)	2088
BstHHI	GCGC	3 cut(s)	302, 1113, 1693
BstKTI	GATC	4 cut(s)	235, 394, 1441, 2121
BstMAI	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
BstMBI	GATC	4 cut(s)	232, 391, 1438, 2118
BstNI	CCWGG	3 cut(s)	1394, 1547, 1795
BstNSI	RCATGY	5 cut(s)	611, 1318, 1925, 2140, 2237
BstSCI	CCNGG	3 cut(s)	1392, 1545, 1793
BstSFI	CTRYAG	5 cut(s)	453, 766, 1300, 1503, 1612
BstUI	CGCG	1 cut(s)	2088
BstV1I	GCAGC	7 cut(s)	266, 314, 424, 457, 461, 931, 1087
BstX2I	RGATCY	2 cut(s)	232, 2118
BstXI	CCANNNNNNTGG	1 cut(s)	785
BstYI	RGATCY	2 cut(s)	232, 2118
BstZ17I	GTATAC	2 cut(s)	339, 2018
BsuRI	GGCC	7 cut(s)	591, 777, 789, 959, 1084, 1445, 1803
BtgI	CCRYGG	1 cut(s)	1079
BtgZI	GCGATG	1 cut(s)	1805
BtsCI	GGATG	5 cut(s)	360, 676, 1336, 1385, 1494
BtsIMutI	CAGTG	3 cut(s)	979, 987, 1251
BtuMI	TCGCGA	1 cut(s)	2088
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	6 cut(s)	127, 378, 779, 1619, 1659, 1923
CaiI	CAGNNNCTG	1 cut(s)	1436
CciI	TCATGA	1 cut(s)	1708
CfoI	GCGC	3 cut(s)	302, 1113, 1693
Cfr10I	RCCGGY	1 cut(s)	924
Cfr13I	GGNCC	5 cut(s)	788, 957, 1083, 1443, 1570
CpoI	CGGWCCG	1 cut(s)	1570
Csp6I	GTAC	4 cut(s)	807, 1218, 1318, 2237
CspI	CGGWCCG	1 cut(s)	1570
CviQI	GTAC	4 cut(s)	807, 1218, 1318, 2237
DdeI	CTNAG	9 cut(s)	239, 285, 797, 979, 1037, 1576, 1584, 1912, 2059
DpnI	GATC	4 cut(s)	234, 393, 1440, 2120
DpnII	GATC	4 cut(s)	232, 391, 1438, 2118
DraI	TTTAAA	2 cut(s)	174, 1929
EaeI	YGGCCR	2 cut(s)	589, 775
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	3 cut(s)	678, 943, 1991
Ecl136II	GAGCTC	2 cut(s)	837, 1041
Eco130I	CCWWGG	3 cut(s)	1079, 1288, 1804
Eco24I	GRGCYC	2 cut(s)	839, 1043
Eco32I	GATATC	2 cut(s)	1187, 1563
Eco47I	GGWCC	1 cut(s)	1570
Eco53kI	GAGCTC	2 cut(s)	837, 1041
Eco57I	CTGAAG	6 cut(s)	462, 600, 842, 969, 1245, 1432
EcoICRI	GAGCTC	2 cut(s)	837, 1041
EcoNI	CCTNNNNNAGG	2 cut(s)	539, 1292
EcoRII	CCWGG	3 cut(s)	1392, 1545, 1793
EcoRV	GATATC	2 cut(s)	1187, 1563
EcoT14I	CCWWGG	3 cut(s)	1079, 1288, 1804
EcoT22I	ATGCAT	2 cut(s)	2142, 2173
EcoT38I	GRGCYC	2 cut(s)	839, 1043
ErhI	CCWWGG	3 cut(s)	1079, 1288, 1804
Esp3I	CGTCTC	1 cut(s)	98
FalI	AAGNNNNNCTT	3 cut(s)	29, 2139, 2171
FauI	CCCGC	1 cut(s)	946
FauNDI	CATATG	2 cut(s)	1123, 1687
FblI	GTMKAC	3 cut(s)	338, 2017, 2100
Fnu4HI	GCNGC	9 cut(s)	199, 255, 303, 438, 450, 471, 945, 1076, 2129
FokI	GGATG	5 cut(s)	347, 663, 1343, 1392, 1501
FriOI	GRGCYC	2 cut(s)	839, 1043
Fsp4HI	GCNGC	9 cut(s)	199, 255, 303, 438, 450, 471, 945, 1076, 2129
FspAI	RTGCGCAY	1 cut(s)	1692
FspBI	CTAG	6 cut(s)	1173, 1182, 1724, 1949, 2013, 2249
FspI	TGCGCA	2 cut(s)	1112, 1692
GlaI	GCGC	3 cut(s)	301, 1112, 1692
GluI	GCNGC	9 cut(s)	199, 255, 303, 438, 450, 471, 945, 1076, 2129
HaeIII	GGCC	7 cut(s)	591, 777, 789, 959, 1084, 1445, 1803
HapII	CCGG	4 cut(s)	55, 925, 990, 1858
HhaI	GCGC	3 cut(s)	302, 1113, 1693
Hin6I	GCGC	3 cut(s)	300, 1111, 1691
HinP1I	GCGC	3 cut(s)	300, 1111, 1691
HindIII	AAGCTT	3 cut(s)	150, 1404, 2046
HinfI	GANTC	5 cut(s)	914, 1130, 1273, 1680, 1987
HpaII	CCGG	4 cut(s)	55, 925, 990, 1858
HphI	GGTGA	2 cut(s)	476, 1461
Hpy166II	GTNNAC	5 cut(s)	339, 405, 527, 2018, 2101
Hpy188I	TCNGA	9 cut(s)	103, 228, 580, 822, 1264, 1432, 1644, 1758, 1846
Hpy8I	GTNNAC	5 cut(s)	339, 405, 527, 2018, 2101
HpyCH4III	ACNGT	8 cut(s)	23, 35, 117, 495, 1147, 1153, 1478, 1507
HpyCH4IV	ACGT	2 cut(s)	1051, 1882
HpyF3I	CTNAG	9 cut(s)	239, 285, 797, 979, 1037, 1576, 1584, 1912, 2059
HpySE526I	ACGT	2 cut(s)	1051, 1882
HspAI	GCGC	3 cut(s)	300, 1111, 1691
Kpn2I	TCCGGA	1 cut(s)	1857
KpnI	GGTACC	1 cut(s)	810
Kzo9I	GATC	4 cut(s)	232, 391, 1438, 2118
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	5 cut(s)	757, 930, 1202, 1585, 1846
Lsp1109I	GCAGC	7 cut(s)	266, 314, 424, 457, 461, 931, 1087
LweI	GCATC	4 cut(s)	1321, 1475, 1765, 1858
MaeI	CTAG	6 cut(s)	1173, 1182, 1724, 1949, 2013, 2249
MaeII	ACGT	2 cut(s)	1051, 1882
MaeIII	GTNAC	6 cut(s)	131, 982, 1147, 1541, 2132, 2229
MalI	GATC	4 cut(s)	234, 393, 1440, 2120
MboI	GATC	4 cut(s)	232, 391, 1438, 2118
MboII	GAAGA	9 cut(s)	227, 428, 455, 593, 870, 1538, 1878, 1952, 1996
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	2 cut(s)	232, 2118
MhlI	GDGCHC	3 cut(s)	803, 839, 1043
MlsI	TGGCCA	2 cut(s)	591, 777
MluNI	TGGCCA	2 cut(s)	591, 777
MlyI	GAGTC	1 cut(s)	1282
MmeI	TCCRAC	1 cut(s)	1378
Mox20I	TGGCCA	2 cut(s)	591, 777
Mph1103I	ATGCAT	2 cut(s)	2142, 2173
MroI	TCCGGA	1 cut(s)	1857
MscI	TGGCCA	2 cut(s)	591, 777
MseI	TTAA	8 cut(s)	173, 372, 711, 1538, 1671, 1928, 2070, 2211
MslI	CAYNNNNRTG	2 cut(s)	217, 1713
Msp20I	TGGCCA	2 cut(s)	591, 777
MspA1I	CMGCKG	2 cut(s)	305, 452
MspI	CCGG	4 cut(s)	55, 925, 990, 1858
MspR9I	CCNGG	3 cut(s)	1394, 1547, 1795
MunI	CAATTG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	1113
MvaI	CCWGG	3 cut(s)	1394, 1547, 1795
MvnI	CGCG	1 cut(s)	2088
NcoI	CCATGG	1 cut(s)	1079
NdeI	CATATG	2 cut(s)	1123, 1687
NdeII	GATC	4 cut(s)	232, 391, 1438, 2118
NlaIV	GGNNCC	3 cut(s)	291, 808, 958
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	982, 1147
NruI	TCGCGA	1 cut(s)	2088
NsbI	TGCGCA	2 cut(s)	1112, 1692
NsiI	ATGCAT	2 cut(s)	2142, 2173
NspI	RCATGY	5 cut(s)	611, 1318, 1925, 2140, 2237
PaeI	GCATGC	1 cut(s)	1925
PagI	TCATGA	1 cut(s)	1708
PciI	ACATGT	2 cut(s)	607, 2233
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	1113
PfeI	GAWTC	4 cut(s)	914, 1130, 1680, 1987
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	9 cut(s)	200, 256, 304, 439, 451, 472, 946, 1077, 2130
PleI	GAGTC	1 cut(s)	1281
PpsI	GAGTC	1 cut(s)	1281
PscI	ACATGT	2 cut(s)	607, 2233
PsiI	TTATAA	1 cut(s)	1788
Psp124BI	GAGCTC	2 cut(s)	839, 1043
Psp6I	CCWGG	3 cut(s)	1392, 1545, 1793
PspGI	CCWGG	3 cut(s)	1392, 1545, 1793
PspN4I	GGNNCC	3 cut(s)	291, 808, 958
PspPI	GGNCC	5 cut(s)	788, 957, 1083, 1443, 1570
PstNI	CAGNNNCTG	1 cut(s)	1436
PsuI	RGATCY	2 cut(s)	232, 2118
PsyI	GACNNNGTC	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	305, 452
RruI	TCGCGA	1 cut(s)	2088
RsaI	GTAC	4 cut(s)	808, 1219, 1319, 2238
RsaNI	GTAC	4 cut(s)	807, 1218, 1318, 2237
RseI	CAYNNNNRTG	2 cut(s)	217, 1713
Rsr2I	CGGWCCG	1 cut(s)	1570
RsrII	CGGWCCG	1 cut(s)	1570
SacI	GAGCTC	2 cut(s)	839, 1043
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	8 cut(s)	173, 372, 711, 1538, 1671, 1928, 2070, 2211
SatI	GCNGC	9 cut(s)	199, 255, 303, 438, 450, 471, 945, 1076, 2129
Sau3AI	GATC	4 cut(s)	232, 391, 1438, 2118
Sau96I	GGNCC	5 cut(s)	788, 957, 1083, 1443, 1570
ScaI	AGTACT	1 cut(s)	1219
SchI	GAGTC	1 cut(s)	1282
ScrFI	CCNGG	3 cut(s)	1394, 1547, 1795
SduI	GDGCHC	3 cut(s)	803, 839, 1043
SfaNI	GCATC	4 cut(s)	1321, 1475, 1765, 1858
SfcI	CTRYAG	5 cut(s)	453, 766, 1300, 1503, 1612
SinI	GGWCC	1 cut(s)	1570
SmiMI	CAYNNNNRTG	2 cut(s)	217, 1713
SmlI	CTYRAG	1 cut(s)	1551
SmoI	CTYRAG	1 cut(s)	1551
SphI	GCATGC	1 cut(s)	1925
SsiI	CCGC	9 cut(s)	199, 663, 886, 928, 953, 1573, 1976, 2054, 2128
SspI	AATATT	1 cut(s)	1269
SspMI	CTAG	6 cut(s)	1173, 1182, 1724, 1949, 2013, 2249
SstI	GAGCTC	2 cut(s)	839, 1043
StyD4I	CCNGG	3 cut(s)	1392, 1545, 1793
StyI	CCWWGG	3 cut(s)	1079, 1288, 1804
TaaI	ACNGT	8 cut(s)	23, 35, 117, 495, 1147, 1153, 1478, 1507
TaiI	ACGT	2 cut(s)	1054, 1885
TaqI	TCGA	2 cut(s)	16, 2040
TatI	WGTACW	2 cut(s)	1217, 1317
TauI	GCSGC	2 cut(s)	201, 2131
TfiI	GAWTC	4 cut(s)	914, 1130, 1680, 1987
Tru1I	TTAA	8 cut(s)	173, 372, 711, 1538, 1671, 1928, 2070, 2211
Tru9I	TTAA	8 cut(s)	173, 372, 711, 1538, 1671, 1928, 2070, 2211
TscAI	CASTG	3 cut(s)	979, 987, 1258
TseFI	GTSAC	2 cut(s)	982, 1147
TseI	GCWGC	7 cut(s)	254, 302, 437, 449, 470, 944, 1075
Tsp45I	GTSAC	2 cut(s)	982, 1147
TspGWI	ACGGA	2 cut(s)	29, 1583
TspRI	CASTG	3 cut(s)	979, 987, 1258
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	1570
XagI	CCTNNNNNAGG	2 cut(s)	539, 1292
XapI	RAATTY	4 cut(s)	109, 568, 643, 1648
XbaI	TCTAGA	1 cut(s)	1723
XceI	RCATGY	5 cut(s)	611, 1318, 1925, 2140, 2237
XmiI	GTMKAC	3 cut(s)	338, 2017, 2100
XspI	CTAG	6 cut(s)	1173, 1182, 1724, 1949, 2013, 2249
ZrmI	AGTACT	1 cut(s)	1219
Zsp2I	ATGCAT	2 cut(s)	2142, 2173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.