Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005766

Physical Location & Seq

Genomic Coordinates Forward (+)

87430960 .. 87438952

Gene Structure 7993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGGAAGCCATACTCCGAGACTCCGTTCACCACAGCCTTCGCGATTTCCTCCACCGCAACGCCATTTTCCTCTGCGAGCGTCTCTGCGCCGAGTTCCCCTCCGAGGTTCCTCCCTTCTCCTCCTTCTCCTTCTCCTTCTCCGCCTCCTCTATTCCACTTCCCCCTTTGTTTAATCACACAGAAAACCCTAGCAAAAACGCAGGAAGATGGAAATATTCGAAATTGATTCGGTTTAGTTTTTCAGTGTTGACCGGACCAGAGGCACTAGCGCTCTTTACAAATTTGCAATTGTTAGCTGGATGTTACTTGCATAGTAATCAAGCTTATGCCGCATACCATATTTTAAAGGGAACACAAGTGGCTCAATCACGCTACTTGTTTGCTATGTCATGCTATCAAATGAATCTTCTCAATGAGGCAGAAGCAGCATTATGCCCCCTAATGAGCCTAGTGCAGAGGTTCCAAATGGCGCAGCAGGTCATTACCTTCTTGGGCTTATTTATAGGCTTGTATTTTGTTTCTTCTATTATTGTTGGCCAAGATATCTGTGTGTCTGGAAATTCTTCAGATTGTCAAAAGTATACTGATAGAAGGAAAAGTGCCATCCATCACTTTAAACAGGCTTTGACTATGGACCCTTCAATGTGGGCTGCGTATGAAGAGCTGTGTGTTCTGCTGAAGAAGCAGCTGTGGTTTTTTGGGGAAGCTGCTGCTCTTTCCATACAAAAACAGTACCTACATCATGGATTAGCTTCTCAAAGTTTACTCACCGTCAATGATGATTGCAATTTAGTTTCTGGAAGGAACTTTAGCTTTGAAGATGTTAGTCCAAGACAATTGAAACTAATGCAAGGCAGTAATACAAGAGATAGTTCTGGAAATTCTCATGTTATTTTAGGAGGAGTTTCTGGTCAGCCCACAAACGGCAGTTCTAACATATCTTTCTATAACACTCCTTCACCAATGCCTATGCAGTTGTCAGGTATCGCTCCACCGCCGGTTTGTAGAAATGCCCTGCCAAATGGCCTAAACCTCAGCTCTGGTACTGATAGCTCTCCTAGGTCAACTATGAGCTCTACCGTTCAAGCTGGGAGAAGAAAGTTTGTTGATGAAGGAAAACTTCGAAAGGTAGCTAACAATGAGTCAGCTATTCGATTGATTTCTAGTAGATTATCTTTTGATTCTGGCAACCGAAGGAGCAATAGACTTGCTGCTGAAGCAGGGGCTAACACCAATGCAAGTGCGTCCATGGCAGCTGGAAATGGAACTACCAATACATCTAAAATTGGAAGTTCTAAGTTGGGCTCTGTAGCACGCTCCTTGACAAGTCGGAAGGGTCAGCCATGGGCCAATGAAAACCTTGATGAAGGCATACGGAATGAGACATTCGATGATTCCCGTTCAAATACAGCAGCTATCTCTGGTTTTACTCCCACTAGTGATACCAGATATCTTGAACAAGATGGAGCAACATTGTCAATTGGTGGGGGTATTATGCATGCTTCAAAAGTTATTAGCGGTGCTTCAGAAATATTGAGCCTTTTGAGAACTCTTGGGGAAGGTTATAGGCTTTCATGCATGTACAGGTGCCAGGTTGGAAAAGCTTATTTTGAATTGCTAGATTATTTTGAAGCTGATAGGGCCTTCAGTCTGGCTCGACAGGCATCACCTTACAGTTTAGAAGGAATGGATGTATATTCTACAGTTCTTTATCTTTTGAACGAAGATATGAAGTTAAGTTACCTGGCACAAGAGCTCATATCAACTGATCGCTTAGCTCCTCAGTCTTGGTGTGCAATGGGAAATTGCTATAGCTTGCAGAAAGATCATGAAACTGCTCTGAAGAATTTCCAGCGAGCTGTTCAACTTAATTCAAAATTCACATATGCACATACCCTTTGTGGTCATGAATATGTAGCCCTGGATGATTTTGAGAATGGAATAAAGAGCTATCAGAGTGCACTTCGGCTTGATGCAAGGCATTATAACTCCTGGTTTGGGCTTGGAATGATTTATTTTCGGCAAGAGAAGTTTGAGTTTGCAGAGCATCACTTCCGGATGGCTAACCAAATAAATCCATGTTCTTCTGTTATTGCGTCTAATCTTGGCACAGCATTGCATGCTTTACAGAGGAGTGATGAAGCTTTGGCGATAATGGAGAAGGCTATTAGAGCAGATGACAAGAATCCTGTTCCCATGTATCAAAAGGCTAATATATTAATGAGCTTAGAAAAGTTTGATGAAGCTTTAGCAGTCTTGGAGCAGCTTAATGAATATTCTCCTCGTGAAAGTAGTGTGCATGCTTTGATGGGTAGGATTTATAAGCGGCGAAACATGCATGACAAAGCAATGCTTCATTTTGGCATTGCATTGGATTTGAAACCATCTACAACTGATGTCACTGCCATTAAGGCTGCCATTGAGAGGTTACTTGTACCGGATGAAATAGACGACAACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

820

Amino Acids

90.91

Weight (kDa)

7.57

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	94 - 145	6.5e-09	Anaphase-promoting complex, cyclosome, subunit 3
TPR_1	PF00515	595 - 627	1.3e-07	Tetratricopeptide repeat
TPR_19	PF14559	708 - 773	2.2e-09	Tetratricopeptide repeat
TPR-S	PF20308	713 - 780	3.1e-06	Tetratricopeptide Repeats-Sensor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20000 AT2G20000
fragaria_vesca	FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910
malus_domestica	MD02G1061000.v1.1 MD15G1194500.v1.1
prunus_persica	Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1
pyrus_communis	pycom02g05010 pycom15g17410
rosa_chinensis	RchiOBHm_Chr2g0091551 RchiOBHm_Chr2g0091631
rosa_laevigata	RLG00000016236
rosa_multiflora	Rmu_sc0000897.1_g000018
rosa_roxburghii	Rroxscaffold_2G00149940
rosa_rugosa	Rorug02G0018700 Rorug02G0018700
rosa_samantha	Rh2AG063900 Rh2BG063300 Rh2CG065000 Rh2DG063400
rosa_wichuraiana	Rw2G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1986, 2322
Acc36I	ACCTGC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	1587
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	2055
AciI	CCGC	6 cut(s)	55, 141, 330, 995, 1518, 2326
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	5 cut(s)	280, 559, 880, 1846, 1877
AcuI	CTGAAG	6 cut(s)	549, 698, 1236, 1509, 1630, 1862
AfaI	GTAC	4 cut(s)	734, 1045, 1583, 2436
AfeI	AGCGCT	1 cut(s)	270
AfiI	CCNNNNNNNGG	4 cut(s)	103, 923, 1998, 2424
AhlI	ACTAGT	1 cut(s)	1436
AjnI	CCWGG	4 cut(s)	1590, 1743, 1920, 1991
Alw21I	GWGCWC	3 cut(s)	1076, 1758, 1963
Alw26I	GTCTC	3 cut(s)	12, 86, 1376
Alw44I	GTGCAC	1 cut(s)	1959
Aor13HI	TCCGGA	1 cut(s)	2055
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	4 cut(s)	535, 1024, 1347, 1641
ApaLI	GTGCAC	1 cut(s)	1959
ApoI	RAATTY	5 cut(s)	280, 559, 880, 1846, 1877
AseI	ATTAAT	1 cut(s)	2219
Asp700I	GAANNNNTTC	2 cut(s)	562, 1847
AspA2I	CCTAGG	1 cut(s)	1058
AspLEI	GCGC	3 cut(s)	89, 271, 472
AspS9I	GGNCC	4 cut(s)	254, 634, 1347, 1641
AsuHPI	GGTGA	4 cut(s)	20, 760, 951, 1659
AsuII	TTCGAA	2 cut(s)	218, 1123
AvaII	GGWCC	2 cut(s)	254, 634
AvrII	CCTAGG	1 cut(s)	1058
BaeGI	GKGCMC	1 cut(s)	1963
BalI	TGGCCA	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	1587
BanII	GRGCYC	3 cut(s)	1076, 1307, 1758
BarI	GAAGNNNNNNTAC	2 cut(s)	1724, 1756
BauI	CACGAG	1 cut(s)	2283
Bbv12I	GWGCWC	3 cut(s)	1076, 1758, 1963
BbvCI	CCTCAGC	1 cut(s)	1034
BccI	CCATC	7 cut(s)	201, 611, 615, 1457, 2053, 2302, 2392
BceAI	ACGGC	1 cut(s)	940
BciT130I	CCWGG	4 cut(s)	1592, 1745, 1922, 1993
BcoDI	GTCTC	3 cut(s)	12, 86, 1376
BcuI	ACTAGT	1 cut(s)	1436
BfaI	CTAG	7 cut(s)	189, 266, 449, 1059, 1164, 1437, 1619
BfmI	CTRYAG	4 cut(s)	1308, 1701, 1810, 2459
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	2411
BlnI	CCTAGG	1 cut(s)	1058
BlpI	GCTNAGC	1 cut(s)	1774
Bme1390I	CCNGG	4 cut(s)	1592, 1745, 1922, 1993
Bme18I	GGWCC	2 cut(s)	254, 634
BmgT120I	GGNCC	4 cut(s)	254, 634, 1347, 1641
BmiI	GGNNCC	4 cut(s)	108, 461, 636, 1589
BmrFI	CCNGG	4 cut(s)	1592, 1745, 1922, 1993
BmsI	GCATC	3 cut(s)	1673, 1963, 2056
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	1034
Bpu1102I	GCTNAGC	1 cut(s)	1774
Bpu14I	TTCGAA	2 cut(s)	218, 1123
BsaJI	CCNNGG	5 cut(s)	102, 1058, 1248, 1343, 1920
BsaWI	WCCGGW	3 cut(s)	251, 2055, 2437
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 923, 1998, 2424
Bse118I	RCCGGY	1 cut(s)	997
Bse3DI	GCAATG	4 cut(s)	1803, 2114, 2355, 2364
BseAI	TCCGGA	1 cut(s)	2055
BseBI	CCWGG	4 cut(s)	1592, 1745, 1922, 1993
BseDI	CCNNGG	5 cut(s)	102, 1058, 1248, 1343, 1920
BseGI	GGATG	6 cut(s)	305, 603, 1696, 1930, 2064, 2446
BseLI	CCNNNNNNNGG	4 cut(s)	103, 923, 1998, 2424
BseMI	GCAATG	4 cut(s)	1803, 2114, 2355, 2364
BseMII	CTCAG	2 cut(s)	1048, 1796
BseRI	GAGGAG	6 cut(s)	109, 136, 915, 1770, 2146, 2271
BseSI	GKGCMC	1 cut(s)	1963
BseYI	CCCAGC	1 cut(s)	1088
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	537, 1026, 1349, 1643
BshNI	GGYRCC	1 cut(s)	1587
BsiHKAI	GWGCWC	3 cut(s)	1076, 1758, 1963
BsiSI	CCGG	4 cut(s)	252, 998, 2056, 2438
BslI	CCNNNNNNNGG	4 cut(s)	103, 923, 1998, 2424
BsmAI	GTCTC	3 cut(s)	12, 86, 1376
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	537, 1026, 1349, 1643
Bsp119I	TTCGAA	2 cut(s)	218, 1123
Bsp1286I	GDGCHC	4 cut(s)	1076, 1307, 1758, 1963
Bsp13I	TCCGGA	1 cut(s)	2055
Bsp1407I	TGTACA	1 cut(s)	1581
Bsp143I	GATC	2 cut(s)	1768, 1825
Bsp1720I	GCTNAGC	1 cut(s)	1774
Bsp19I	CCATGG	2 cut(s)	1248, 1343
Bsp68I	TCGCGA	1 cut(s)	42
BspACI	CCGC	6 cut(s)	55, 141, 330, 995, 1518, 2326
BspANI	GGCC	4 cut(s)	537, 1026, 1349, 1643
BspCNI	CTCAG	2 cut(s)	1047, 1795
BspEI	TCCGGA	1 cut(s)	2055
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	2 cut(s)	1828, 1906
BspLI	GGNNCC	4 cut(s)	108, 461, 636, 1589
BspMI	ACCTGC	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	654
BspT104I	TTCGAA	2 cut(s)	218, 1123
BspT107I	GGYRCC	1 cut(s)	1587
BsrDI	GCAATG	4 cut(s)	1803, 2114, 2355, 2364
BsrFI	RCCGGY	1 cut(s)	997
BsrGI	TGTACA	1 cut(s)	1581
BssAI	RCCGGY	1 cut(s)	997
BssECI	CCNNGG	5 cut(s)	102, 1058, 1248, 1343, 1920
BssMI	GATC	2 cut(s)	1768, 1825
BssNAI	GTATAC	1 cut(s)	582
BssSI	CACGAG	1 cut(s)	2283
BssT1I	CCWWGG	3 cut(s)	1058, 1248, 1343
Bst1107I	GTATAC	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	2283
Bst2UI	CCWGG	4 cut(s)	1592, 1745, 1922, 1993
Bst4CI	ACNGT	5 cut(s)	732, 772, 1081, 1676, 1705
Bst6I	CTCTTC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	2120
BstAUI	TGTACA	1 cut(s)	1581
BstBI	TTCGAA	2 cut(s)	218, 1123
BstC8I	GCNNGC	7 cut(s)	77, 1315, 1500, 1817, 1857, 2121, 2301
BstDEI	CTNAG	5 cut(s)	1034, 1296, 1774, 1782, 2227
BstDSI	CCRYGG	2 cut(s)	1248, 1343
BstF5I	GGATG	6 cut(s)	305, 603, 1696, 1930, 2064, 2446
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	3 cut(s)	89, 271, 472
BstKTI	GATC	2 cut(s)	1771, 1828
BstMAI	GTCTC	3 cut(s)	12, 86, 1376
BstMBI	GATC	2 cut(s)	1768, 1825
BstNI	CCWGG	4 cut(s)	1592, 1745, 1922, 1993
BstNSI	RCATGY	5 cut(s)	1502, 1582, 2123, 2303, 2338
BstSCI	CCNGG	4 cut(s)	1590, 1743, 1920, 1991
BstSFI	CTRYAG	4 cut(s)	1308, 1701, 1810, 2459
BstSLI	GKGCMC	1 cut(s)	1963
BstUI	CGCG	1 cut(s)	42
BstZ17I	GTATAC	1 cut(s)	582
BsuRI	GGCC	4 cut(s)	537, 1026, 1349, 1643
BtgI	CCRYGG	2 cut(s)	1248, 1343
BtsCI	GGATG	6 cut(s)	305, 603, 1696, 1930, 2064, 2446
BtsI	GCAGTG	1 cut(s)	2400
BtsIMutI	CAGTG	2 cut(s)	249, 2400
BtuMI	TCGCGA	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	7 cut(s)	77, 1315, 1500, 1817, 1857, 2121, 2301
CciI	TCATGA	2 cut(s)	1828, 1906
CfoI	GCGC	3 cut(s)	89, 271, 472
Cfr10I	RCCGGY	1 cut(s)	997
Cfr13I	GGNCC	4 cut(s)	254, 634, 1347, 1641
CseI	GACGC	3 cut(s)	68, 1233, 2085
Csp6I	GTAC	4 cut(s)	733, 1044, 1582, 2435
CviQI	GTAC	4 cut(s)	733, 1044, 1582, 2435
DdeI	CTNAG	5 cut(s)	1034, 1296, 1774, 1782, 2227
DpnI	GATC	2 cut(s)	1770, 1827
DpnII	GATC	2 cut(s)	1768, 1825
DraI	TTTAAA	2 cut(s)	345, 616
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	2 cut(s)	1074, 1756
Eco130I	CCWWGG	3 cut(s)	1058, 1248, 1343
Eco24I	GRGCYC	3 cut(s)	1076, 1307, 1758
Eco32I	GATATC	2 cut(s)	544, 1451
Eco47I	GGWCC	2 cut(s)	254, 634
Eco47III	AGCGCT	1 cut(s)	270
Eco53kI	GAGCTC	2 cut(s)	1074, 1756
Eco57I	CTGAAG	6 cut(s)	549, 698, 1236, 1509, 1630, 1862
EcoICRI	GAGCTC	2 cut(s)	1074, 1756
EcoO109I	RGGNCCY	1 cut(s)	1641
EcoRII	CCWGG	4 cut(s)	1590, 1743, 1920, 1991
EcoRV	GATATC	2 cut(s)	544, 1451
EcoT14I	CCWWGG	3 cut(s)	1058, 1248, 1343
EcoT22I	ATGCAT	3 cut(s)	1500, 1580, 2340
EcoT38I	GRGCYC	3 cut(s)	1076, 1307, 1758
ErhI	CCWWGG	3 cut(s)	1058, 1248, 1343
Esp3I	CGTCTC	1 cut(s)	86
FalI	AAGNNNNNCTT	4 cut(s)	1104, 1136, 2337, 2369
FauNDI	CATATG	1 cut(s)	1885
FblI	GTMKAC	1 cut(s)	581
FokI	GGATG	6 cut(s)	312, 590, 1703, 1937, 2071, 2453
FriOI	GRGCYC	3 cut(s)	1076, 1307, 1758
FspBI	CTAG	7 cut(s)	189, 266, 449, 1059, 1164, 1437, 1619
GlaI	GCGC	3 cut(s)	88, 270, 471
GsaI	CCCAGC	1 cut(s)	1092
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	4 cut(s)	537, 1026, 1349, 1643
HapII	CCGG	4 cut(s)	252, 998, 2056, 2438
HgaI	GACGC	3 cut(s)	68, 1233, 2085
HhaI	GCGC	3 cut(s)	89, 271, 472
Hin6I	GCGC	3 cut(s)	87, 269, 470
HinP1I	GCGC	3 cut(s)	87, 269, 470
HincII	GTYRAC	2 cut(s)	249, 1065
HindII	GTYRAC	2 cut(s)	249, 1065
HindIII	AAGCTT	4 cut(s)	321, 1602, 2142, 2244
HinfI	GANTC	7 cut(s)	20, 226, 403, 1142, 1181, 1394, 2185
HpaII	CCGG	4 cut(s)	252, 998, 2056, 2438
HphI	GGTGA	4 cut(s)	20, 760, 951, 1659
Hpy166II	GTNNAC	6 cut(s)	28, 249, 582, 764, 1065, 1961
Hpy188I	TCNGA	7 cut(s)	17, 103, 568, 1332, 1528, 1842, 1956
Hpy188III	TCNNGA	9 cut(s)	41, 555, 798, 876, 1454, 1829, 1907, 2056, 2285
Hpy8I	GTNNAC	6 cut(s)	28, 249, 582, 764, 1065, 1961
HpyCH4III	ACNGT	5 cut(s)	732, 772, 1081, 1676, 1705
HpyF3I	CTNAG	5 cut(s)	1034, 1296, 1774, 1782, 2227
HspAI	GCGC	3 cut(s)	87, 269, 470
Kpn2I	TCCGGA	1 cut(s)	2055
Kzo9I	GATC	2 cut(s)	1768, 1825
LguI	GCTCTTC	1 cut(s)	654
LmnI	GCTCC	6 cut(s)	994, 1197, 1322, 1466, 1783, 2260
LweI	GCATC	3 cut(s)	1673, 1963, 2056
MaeI	CTAG	7 cut(s)	189, 266, 449, 1059, 1164, 1437, 1619
MaeIII	GTNAC	4 cut(s)	302, 1739, 2398, 2427
MalI	GATC	2 cut(s)	1770, 1827
MboI	GATC	2 cut(s)	1768, 1825
MfeI	CAATTG	3 cut(s)	287, 836, 1479
MhlI	GDGCHC	4 cut(s)	1076, 1307, 1758, 1963
MlsI	TGGCCA	1 cut(s)	537
MluNI	TGGCCA	1 cut(s)	537
MlyI	GAGTC	2 cut(s)	14, 1151
MmeI	TCCRAC	2 cut(s)	1310, 1576
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	3 cut(s)	1500, 1580, 2340
MroI	TCCGGA	1 cut(s)	2055
MroXI	GAANNNNTTC	2 cut(s)	562, 1847
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	8 cut(s)	171, 344, 615, 1736, 1869, 2219, 2268, 2409
MslI	CAYNNNNRTG	1 cut(s)	1911
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	2 cut(s)	688, 1256
MspI	CCGG	4 cut(s)	252, 998, 2056, 2438
MspR9I	CCNGG	4 cut(s)	1592, 1745, 1922, 1993
MunI	CAATTG	3 cut(s)	287, 836, 1479
MvaI	CCWGG	4 cut(s)	1592, 1745, 1922, 1993
MvnI	CGCG	1 cut(s)	42
NcoI	CCATGG	2 cut(s)	1248, 1343
NdeI	CATATG	1 cut(s)	1885
NdeII	GATC	2 cut(s)	1768, 1825
NlaIV	GGNNCC	4 cut(s)	108, 461, 636, 1589
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	2398
NruI	TCGCGA	1 cut(s)	42
NsiI	ATGCAT	3 cut(s)	1500, 1580, 2340
NspI	RCATGY	5 cut(s)	1502, 1582, 2123, 2303, 2338
NspV	TTCGAA	2 cut(s)	218, 1123
PaeI	GCATGC	3 cut(s)	1502, 2123, 2303
PagI	TCATGA	2 cut(s)	1828, 1906
PciSI	GCTCTTC	1 cut(s)	654
PdmI	GAANNNNTTC	2 cut(s)	562, 1847
PfeI	GAWTC	5 cut(s)	226, 403, 1181, 1394, 2185
PleI	GAGTC	2 cut(s)	14, 1150
PpsI	GAGTC	2 cut(s)	14, 1150
PshBI	ATTAAT	1 cut(s)	2219
PsiI	TTATAA	2 cut(s)	1986, 2322
Psp124BI	GAGCTC	2 cut(s)	1076, 1758
Psp6I	CCWGG	4 cut(s)	1590, 1743, 1920, 1991
PspFI	CCCAGC	1 cut(s)	1088
PspGI	CCWGG	4 cut(s)	1590, 1743, 1920, 1991
PspN4I	GGNNCC	4 cut(s)	108, 461, 636, 1589
PspPI	GGNCC	4 cut(s)	254, 634, 1347, 1641
PsrI	GAACNNNNNNTAC	2 cut(s)	1258, 1290
PvuII	CAGCTG	2 cut(s)	688, 1256
RruI	TCGCGA	1 cut(s)	42
RsaI	GTAC	4 cut(s)	734, 1045, 1583, 2436
RsaNI	GTAC	4 cut(s)	733, 1044, 1582, 2435
RseI	CAYNNNNRTG	1 cut(s)	1911
SacI	GAGCTC	2 cut(s)	1076, 1758
SapI	GCTCTTC	1 cut(s)	654
SaqAI	TTAA	8 cut(s)	171, 344, 615, 1736, 1869, 2219, 2268, 2409
Sau3AI	GATC	2 cut(s)	1768, 1825
Sau96I	GGNCC	4 cut(s)	254, 634, 1347, 1641
SchI	GAGTC	2 cut(s)	14, 1151
ScrFI	CCNGG	4 cut(s)	1592, 1745, 1922, 1993
SduI	GDGCHC	4 cut(s)	1076, 1307, 1758, 1963
SfaNI	GCATC	3 cut(s)	1673, 1963, 2056
SfcI	CTRYAG	4 cut(s)	1308, 1701, 1810, 2459
SfuI	TTCGAA	2 cut(s)	218, 1123
SinI	GGWCC	2 cut(s)	254, 634
SmiMI	CAYNNNNRTG	1 cut(s)	1911
SpeI	ACTAGT	1 cut(s)	1436
SphI	GCATGC	3 cut(s)	1502, 2123, 2303
SsiI	CCGC	6 cut(s)	55, 141, 330, 995, 1518, 2326
SspI	AATATT	3 cut(s)	215, 1533, 2276
SspMI	CTAG	7 cut(s)	189, 266, 449, 1059, 1164, 1437, 1619
SstI	GAGCTC	2 cut(s)	1076, 1758
StyD4I	CCNGG	4 cut(s)	1590, 1743, 1920, 1991
StyI	CCWWGG	3 cut(s)	1058, 1248, 1343
TaaI	ACNGT	5 cut(s)	732, 772, 1081, 1676, 1705
TaqI	TCGA	5 cut(s)	218, 1123, 1153, 1389, 1657
TatI	WGTACW	1 cut(s)	1581
TauI	GCSGC	2 cut(s)	332, 2329
TfiI	GAWTC	5 cut(s)	226, 403, 1181, 1394, 2185
Tru1I	TTAA	8 cut(s)	171, 344, 615, 1736, 1869, 2219, 2268, 2409
Tru9I	TTAA	8 cut(s)	171, 344, 615, 1736, 1869, 2219, 2268, 2409
TscAI	CASTG	2 cut(s)	249, 2407
TseFI	GTSAC	1 cut(s)	2398
Tsp45I	GTSAC	1 cut(s)	2398
TspGWI	ACGGA	2 cut(s)	13, 1390
TspRI	CASTG	2 cut(s)	249, 2407
VneI	GTGCAC	1 cut(s)	1959
VpaK11BI	GGWCC	2 cut(s)	254, 634
VspI	ATTAAT	1 cut(s)	2219
XapI	RAATTY	5 cut(s)	280, 559, 880, 1846, 1877
XceI	RCATGY	5 cut(s)	1502, 1582, 2123, 2303, 2338
XmaJI	CCTAGG	1 cut(s)	1058
XmiI	GTMKAC	1 cut(s)	581
XmnI	GAANNNNTTC	2 cut(s)	562, 1847
XspI	CTAG	7 cut(s)	189, 266, 449, 1059, 1164, 1437, 1619
Zsp2I	ATGCAT	3 cut(s)	1500, 1580, 2340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.