Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005766

Physical Location & Seq

Genomic Coordinates Reverse (-)

4676229 .. 4684647

Gene Structure 8419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGAAGCCATACTCCGAGACTCCGTTCACCACAGCCTTCGCGATTTCCTCCACCGCAACGCCATTTTCCTCTGCGAGCGTCTCTGCGCCGAGTTCCCCTCCGAGACAAATTTGCAATTGTTAGCTGGATGTTACTTGCATAGTAATCAAGCTTATGCCGCATACCACATTTTAAAGGGAACACAAGTGGCTCAATCACGCTACTTGTTTGCTATGTCATGCTATCAGATGAATCTTCTGAATGAGGCAGAAGCAGCATTATGCCCCCCTAATGAGCCTAGTGCAGAGGTTCCAAATGGCGCAGCAGGTCATTACCTTCTTGGGCTTATTTATAGGTATACTGATAGAAGGAAAAGTGCCATCCATCACTTTAAACAGGCTTTGACTATAGACCCTTCAATGTGGGCTGCGTATGAAGAGCTGTGCGTGCTAGGTTCTGCTGAAGAAGCAGCTGTGGTTTTTGGGGAAGCTGCTGCTCTCTCCATACAAAAACAGTACCTACATCATGGATTAGCTTCTCAAAGTTTACTCACCGTCAATGATGATTGCAATTTAGTTTCTGGAAGGAACTTTAGCTTTGAAGATGTTAGTCCAAGACAATTGAAACTAATGCAAGGCAGTAATACAAGAGATAGTTCTGGAAATTCTCATGTTATTTTAGGAGGAGTTTCTGGTCAGCCTACAAACGGCAGTTCTAACATATCTTTCTATAACACTCCTTCACCAATGCCTATGCAGTTGTCAGGTATCGCTCCACCGCCGGTTTGTAGAAATGCCCTGCCAAATGGCCTAAACCTCAGCTCTGGTACTGATAGCTCTCCTAGGTCAACTATGAGCTCTACCATTCAAGGTGGGAGAAGAAAGTTTGTTGATGAAGGAAAACTTCGAAAGGTAGCTAACAATGAGTCAGCTATTCGATTGATTTCTAGTAGATTATCTTTTGATTCTGGCAACCGAAGGAGCAATAGACTTGCTGCTGAAGCAGGGGCTAACACCAATGCAAGTGCGTCCATGGCAGCTGGAAATGGAACTACCAATACATCTAAAATTGGAAGTTCTAAGTTGGGCTCTGTAGCACGCTCCTTGACAAGTCGGAAGGGTCAGCCATGGGCCAATGAAAACCTTGATGAAGGCATACGGAATGAGACATTCGATGATTCCCGTTCAAATACAGCAGCTATCTCTGGTTTTACTCCCACTAGTGATACCAGATATCTTGAACAAGATGGAGCAACATTGTCAGGTGGTGGGGGTATTATGCATGCTTCAAAAGTTATTAGCGGTGCGTCAGAAATATTGAGCCTTTTGAGAACTCTTGGGGAAGGTTATAGGCTTTCATGCATGTACAGGTGCCAGGATGCACTGGATGTCTATCTGAAACTTCCATACAAGCATTACAATACAGGCTGGGTACTCTGCCAGGTTGGAAAAGCTTATTTTGAATTGCTAGATTATTTTGAAGCTGATAGGGCCTTCAGTCTGGCTCGACAGGCATCACCTTACAGTTTAGAAGGAATGGATGTATATTCTACAGTTCTTTATCTTTTGAACGAAGATATGAAGTTAAGTTACCTGGCACAAGAGCTCATATCAACTGATCGCTTAGCTCCTCAGTCTTGGTGTGCAATGGGAAATTGCTATAGCTTGCAGAAAGATCATGAAACTGCTCTGAAGAATTTCCAGCGAGCTGTTCAACTTAATTCAAAATTCACATATGCGCATACCCTTTGTGGTCATGAATATGTAGCCCTGGATGATTTTGAGAATGGAATAAAGAGCTATCAGAGTGCACTTCGGCTTGATGCAAGGCATTATAACTCCTGGTTTGGGCTTGGAATGATTTATTTTCGGCAAGAGAAGTTTGAGTTTGCAGAGCATCACTTCCGGACAGCTAACCAAATAAATCCATGTTCTTCTGTTATTGCGTCTAATCTTGGCACAGCATTGCATGCTTTACAGGTTCCATTGGCCATATCAATGTTAAAATTACATCTTCTGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

668

Amino Acids

73.44

Weight (kDa)

7.05

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	17 - 88	8.5e-17	Anaphase-promoting complex, cyclosome, subunit 3
TPR_1	PF00515	538 - 570	1e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20000 AT2G20000
fragaria_vesca	FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910
malus_domestica	MD02G1061000.v1.1 MD15G1194500.v1.1
prunus_persica	Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1
pyrus_communis	pycom02g05010 pycom15g17410
rosa_chinensis	RchiOBHm_Chr2g0091551 RchiOBHm_Chr2g0091631
rosa_laevigata	RLG00000016236
rosa_multiflora	Rmu_sc0000897.1_g000018
rosa_roxburghii	Rroxscaffold_2G00149940
rosa_rugosa	Rorug02G0018700 Rorug02G0018700
rosa_samantha	Rh2AG063900 Rh2BG063300 Rh2CG065000 Rh2DG063400
rosa_wichuraiana	Rw2G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1815
Acc16I	TGCGCA	1 cut(s)	1719
Acc36I	ACCTGC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	1350
AccI	GTMKAC	1 cut(s)	338
AccII	CGCG	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	1884
AciI	CCGC	4 cut(s)	55, 159, 758, 1281
AcoI	YGGCCR	1 cut(s)	1968
AcsI	RAATTY	4 cut(s)	109, 643, 1675, 1706
AcuI	CTGAAG	4 cut(s)	462, 999, 1459, 1691
AfaI	GTAC	4 cut(s)	497, 808, 1346, 1413
AfiI	CCNNNNNNNGG	2 cut(s)	686, 1827
AhlI	ACTAGT	1 cut(s)	1199
AjnI	CCWGG	5 cut(s)	1353, 1419, 1572, 1749, 1820
Alw21I	GWGCWC	3 cut(s)	839, 1587, 1792
Alw26I	GTCTC	4 cut(s)	12, 86, 98, 1139
Alw44I	GTGCAC	1 cut(s)	1788
Aor13HI	TCCGGA	1 cut(s)	1884
AoxI	GGCC	4 cut(s)	787, 1110, 1470, 1968
ApaLI	GTGCAC	1 cut(s)	1788
ApeKI	GCWGC	9 cut(s)	254, 302, 407, 449, 470, 473, 974, 1016, 1175
ApoI	RAATTY	4 cut(s)	109, 643, 1675, 1706
Asp700I	GAANNNNTTC	1 cut(s)	1676
AspA2I	CCTAGG	1 cut(s)	821
AspLEI	GCGC	3 cut(s)	89, 302, 1720
AspS9I	GGNCC	2 cut(s)	1110, 1470
AsuHPI	GGTGA	4 cut(s)	20, 523, 714, 1488
AsuII	TTCGAA	1 cut(s)	886
AvrII	CCTAGG	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	1792
BalI	TGGCCA	1 cut(s)	1970
BanI	GGYRCC	1 cut(s)	1350
BanII	GRGCYC	3 cut(s)	839, 1070, 1587
BarI	GAAGNNNNNNTAC	2 cut(s)	1553, 1585
Bbv12I	GWGCWC	3 cut(s)	839, 1587, 1792
BbvCI	CCTCAGC	1 cut(s)	797
BbvI	GCAGC	9 cut(s)	266, 314, 394, 457, 460, 461, 961, 1028, 1187
BccI	CCATC	3 cut(s)	368, 372, 1220
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
BcoDI	GTCTC	4 cut(s)	12, 86, 98, 1139
BcuI	ACTAGT	1 cut(s)	1199
BfaI	CTAG	6 cut(s)	279, 431, 822, 927, 1200, 1448
BfmI	CTRYAG	4 cut(s)	387, 1071, 1530, 1639
BfuAI	ACCTGC	1 cut(s)	296
BlnI	CCTAGG	1 cut(s)	821
BlpI	GCTNAGC	1 cut(s)	1603
Bme1390I	CCNGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
BmgT120I	GGNCC	2 cut(s)	1110, 1470
BmiI	GGNNCC	3 cut(s)	291, 1352, 1962
BmrFI	CCNGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
BmsI	GCATC	4 cut(s)	1348, 1502, 1792, 1885
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	797
Bpu1102I	GCTNAGC	1 cut(s)	1603
Bpu14I	TTCGAA	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	1371
BsaJI	CCNNGG	4 cut(s)	821, 1011, 1106, 1749
BsaWI	WCCGGW	1 cut(s)	1884
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 1827
Bse118I	RCCGGY	1 cut(s)	760
Bse1I	ACTGG	1 cut(s)	1368
Bse3DI	GCAATG	2 cut(s)	1632, 1943
Bse8I	GATNNNNATC	1 cut(s)	1371
BseAI	TCCGGA	1 cut(s)	1884
BseBI	CCWGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
BseDI	CCNNGG	4 cut(s)	821, 1011, 1106, 1749
BseGI	GGATG	6 cut(s)	134, 360, 1363, 1372, 1525, 1759
BseJI	GATNNNNATC	1 cut(s)	1371
BseLI	CCNNNNNNNGG	2 cut(s)	686, 1827
BseMI	GCAATG	2 cut(s)	1632, 1943
BseMII	CTCAG	2 cut(s)	811, 1625
BseNI	ACTGG	1 cut(s)	1368
BseRI	GAGGAG	2 cut(s)	678, 1599
BseSI	GKGCMC	1 cut(s)	1792
BseXI	GCAGC	9 cut(s)	266, 314, 394, 457, 460, 461, 961, 1028, 1187
BseYI	CCCAGC	1 cut(s)	1407
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	789, 1112, 1472, 1970
BshNI	GGYRCC	1 cut(s)	1350
BsiHKAI	GWGCWC	3 cut(s)	839, 1587, 1792
BsiSI	CCGG	2 cut(s)	761, 1885
BslI	CCNNNNNNNGG	2 cut(s)	686, 1827
BsmAI	GTCTC	4 cut(s)	12, 86, 98, 1139
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	789, 1112, 1472, 1970
Bsp119I	TTCGAA	1 cut(s)	886
Bsp1286I	GDGCHC	4 cut(s)	839, 1070, 1587, 1792
Bsp13I	TCCGGA	1 cut(s)	1884
Bsp1407I	TGTACA	1 cut(s)	1344
Bsp143I	GATC	2 cut(s)	1597, 1654
Bsp1720I	GCTNAGC	1 cut(s)	1603
Bsp19I	CCATGG	2 cut(s)	1011, 1106
Bsp68I	TCGCGA	1 cut(s)	42
BspACI	CCGC	4 cut(s)	55, 159, 758, 1281
BspANI	GGCC	4 cut(s)	789, 1112, 1472, 1970
BspCNI	CTCAG	2 cut(s)	810, 1624
BspEI	TCCGGA	1 cut(s)	1884
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	2 cut(s)	1657, 1735
BspLI	GGNNCC	3 cut(s)	291, 1352, 1962
BspMI	ACCTGC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	411
BspT104I	TTCGAA	1 cut(s)	886
BspT107I	GGYRCC	1 cut(s)	1350
BsrDI	GCAATG	2 cut(s)	1632, 1943
BsrFI	RCCGGY	1 cut(s)	760
BsrGI	TGTACA	1 cut(s)	1344
BsrI	ACTGG	1 cut(s)	1368
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	4 cut(s)	821, 1011, 1106, 1749
BssMI	GATC	2 cut(s)	1597, 1654
BssNAI	GTATAC	1 cut(s)	339
BssT1I	CCWWGG	3 cut(s)	821, 1011, 1106
Bst1107I	GTATAC	1 cut(s)	339
Bst2UI	CCWGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
Bst4CI	ACNGT	4 cut(s)	495, 535, 1505, 1534
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	1949
BstAUI	TGTACA	1 cut(s)	1344
BstBI	TTCGAA	1 cut(s)	886
BstC8I	GCNNGC	7 cut(s)	77, 428, 1078, 1263, 1646, 1686, 1950
BstDEI	CTNAG	4 cut(s)	797, 1059, 1603, 1611
BstDSI	CCRYGG	2 cut(s)	1011, 1106
BstF5I	GGATG	6 cut(s)	134, 360, 1363, 1372, 1525, 1759
BstFNI	CGCG	1 cut(s)	42
BstHHI	GCGC	3 cut(s)	89, 302, 1720
BstKTI	GATC	2 cut(s)	1600, 1657
BstMAI	GTCTC	4 cut(s)	12, 86, 98, 1139
BstMBI	GATC	2 cut(s)	1597, 1654
BstMWI	GCNNNNNNNGC	9 cut(s)	158, 254, 427, 446, 980, 1013, 1469, 1490, 1949
BstNI	CCWGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
BstNSI	RCATGY	3 cut(s)	1265, 1345, 1952
BstSCI	CCNGG	5 cut(s)	1353, 1419, 1572, 1749, 1820
BstSFI	CTRYAG	4 cut(s)	387, 1071, 1530, 1639
BstSLI	GKGCMC	1 cut(s)	1792
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	9 cut(s)	266, 314, 394, 457, 460, 461, 961, 1028, 1187
BstZ17I	GTATAC	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	789, 1112, 1472, 1970
BtgI	CCRYGG	2 cut(s)	1011, 1106
BtsCI	GGATG	6 cut(s)	134, 360, 1363, 1372, 1525, 1759
BtsIMutI	CAGTG	1 cut(s)	1361
BtuMI	TCGCGA	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	7 cut(s)	77, 428, 1078, 1263, 1646, 1686, 1950
CciI	TCATGA	2 cut(s)	1657, 1735
CfoI	GCGC	3 cut(s)	89, 302, 1720
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	1110, 1470
CseI	GACGC	4 cut(s)	68, 996, 1275, 1914
Csp6I	GTAC	4 cut(s)	496, 807, 1345, 1412
CviQI	GTAC	4 cut(s)	496, 807, 1345, 1412
DdeI	CTNAG	4 cut(s)	797, 1059, 1603, 1611
DpnI	GATC	2 cut(s)	1599, 1656
DpnII	GATC	2 cut(s)	1597, 1654
DraI	TTTAAA	2 cut(s)	174, 373
EaeI	YGGCCR	1 cut(s)	1968
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	2 cut(s)	837, 1585
Eco130I	CCWWGG	3 cut(s)	821, 1011, 1106
Eco24I	GRGCYC	3 cut(s)	839, 1070, 1587
Eco32I	GATATC	1 cut(s)	1214
Eco53kI	GAGCTC	2 cut(s)	837, 1585
Eco57I	CTGAAG	4 cut(s)	462, 999, 1459, 1691
EcoICRI	GAGCTC	2 cut(s)	837, 1585
EcoO109I	RGGNCCY	1 cut(s)	1470
EcoRII	CCWGG	5 cut(s)	1353, 1419, 1572, 1749, 1820
EcoRV	GATATC	1 cut(s)	1214
EcoT14I	CCWWGG	3 cut(s)	821, 1011, 1106
EcoT22I	ATGCAT	2 cut(s)	1263, 1343
EcoT38I	GRGCYC	3 cut(s)	839, 1070, 1587
ErhI	CCWWGG	3 cut(s)	821, 1011, 1106
Esp3I	CGTCTC	1 cut(s)	86
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FauNDI	CATATG	1 cut(s)	1714
FblI	GTMKAC	1 cut(s)	338
FokI	GGATG	6 cut(s)	141, 347, 1370, 1379, 1532, 1766
FriOI	GRGCYC	3 cut(s)	839, 1070, 1587
FspAI	RTGCGCAY	1 cut(s)	1719
FspBI	CTAG	6 cut(s)	279, 431, 822, 927, 1200, 1448
FspI	TGCGCA	1 cut(s)	1719
GlaI	GCGC	3 cut(s)	88, 301, 1719
GsaI	CCCAGC	1 cut(s)	1411
HaeIII	GGCC	4 cut(s)	789, 1112, 1472, 1970
HapII	CCGG	2 cut(s)	761, 1885
HgaI	GACGC	4 cut(s)	68, 996, 1275, 1914
HhaI	GCGC	3 cut(s)	89, 302, 1720
Hin6I	GCGC	3 cut(s)	87, 300, 1718
HinP1I	GCGC	3 cut(s)	87, 300, 1718
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HindIII	AAGCTT	2 cut(s)	150, 1431
HinfI	GANTC	5 cut(s)	20, 232, 905, 944, 1157
HpaII	CCGG	2 cut(s)	761, 1885
HphI	GGTGA	4 cut(s)	20, 523, 714, 1488
Hpy166II	GTNNAC	5 cut(s)	28, 339, 527, 828, 1790
Hpy188III	TCNNGA	7 cut(s)	41, 561, 639, 1217, 1658, 1736, 1885
Hpy8I	GTNNAC	5 cut(s)	28, 339, 527, 828, 1790
HpyCH4III	ACNGT	4 cut(s)	495, 535, 1505, 1534
HpyF10VI	GCNNNNNNNGC	9 cut(s)	158, 254, 427, 446, 980, 1013, 1469, 1490, 1949
HpyF3I	CTNAG	4 cut(s)	797, 1059, 1603, 1611
HspAI	GCGC	3 cut(s)	87, 300, 1718
Kpn2I	TCCGGA	1 cut(s)	1884
Kzo9I	GATC	2 cut(s)	1597, 1654
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	5 cut(s)	757, 960, 1085, 1229, 1612
Lsp1109I	GCAGC	9 cut(s)	266, 314, 394, 457, 460, 461, 961, 1028, 1187
LweI	GCATC	4 cut(s)	1348, 1502, 1792, 1885
MaeI	CTAG	6 cut(s)	279, 431, 822, 927, 1200, 1448
MaeIII	GTNAC	2 cut(s)	131, 1568
MalI	GATC	2 cut(s)	1599, 1656
MboI	GATC	2 cut(s)	1597, 1654
MboII	GAAGA	9 cut(s)	227, 428, 455, 593, 870, 1565, 1684, 1905, 1985
MfeI	CAATTG	2 cut(s)	116, 599
MhlI	GDGCHC	4 cut(s)	839, 1070, 1587, 1792
MlsI	TGGCCA	1 cut(s)	1970
MluNI	TGGCCA	1 cut(s)	1970
MlyI	GAGTC	2 cut(s)	14, 914
MmeI	TCCRAC	2 cut(s)	1073, 1405
MnlI	CCTC	8 cut(s)	59, 80, 109, 238, 280, 656, 806, 1620
Mox20I	TGGCCA	1 cut(s)	1970
Mph1103I	ATGCAT	2 cut(s)	1263, 1343
MroI	TCCGGA	1 cut(s)	1884
MroXI	GAANNNNTTC	1 cut(s)	1676
MscI	TGGCCA	1 cut(s)	1970
MseI	TTAA	6 cut(s)	173, 372, 1565, 1698, 1982, 2005
MslI	CAYNNNNRTG	2 cut(s)	1740, 1976
Msp20I	TGGCCA	1 cut(s)	1970
MspA1I	CMGCKG	2 cut(s)	452, 1019
MspI	CCGG	2 cut(s)	761, 1885
MspR9I	CCNGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
MunI	CAATTG	2 cut(s)	116, 599
MvaI	CCWGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	9 cut(s)	158, 254, 427, 446, 980, 1013, 1469, 1490, 1949
NcoI	CCATGG	2 cut(s)	1011, 1106
NdeI	CATATG	1 cut(s)	1714
NdeII	GATC	2 cut(s)	1597, 1654
NlaIV	GGNNCC	3 cut(s)	291, 1352, 1962
NmeAIII	GCCGAG	1 cut(s)	115
NruI	TCGCGA	1 cut(s)	42
NsbI	TGCGCA	1 cut(s)	1719
NsiI	ATGCAT	2 cut(s)	1263, 1343
NspI	RCATGY	3 cut(s)	1265, 1345, 1952
NspV	TTCGAA	1 cut(s)	886
PaeI	GCATGC	2 cut(s)	1265, 1952
PagI	TCATGA	2 cut(s)	1657, 1735
PciSI	GCTCTTC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	1676
PfeI	GAWTC	3 cut(s)	232, 944, 1157
PleI	GAGTC	2 cut(s)	14, 913
PpsI	GAGTC	2 cut(s)	14, 913
PsiI	TTATAA	1 cut(s)	1815
Psp124BI	GAGCTC	2 cut(s)	839, 1587
Psp6I	CCWGG	5 cut(s)	1353, 1419, 1572, 1749, 1820
PspFI	CCCAGC	1 cut(s)	1407
PspGI	CCWGG	5 cut(s)	1353, 1419, 1572, 1749, 1820
PspN4I	GGNNCC	3 cut(s)	291, 1352, 1962
PspPI	GGNCC	2 cut(s)	1110, 1470
PsrI	GAACNNNNNNTAC	2 cut(s)	1021, 1053
PvuII	CAGCTG	2 cut(s)	452, 1019
RruI	TCGCGA	1 cut(s)	42
RsaI	GTAC	4 cut(s)	497, 808, 1346, 1413
RsaNI	GTAC	4 cut(s)	496, 807, 1345, 1412
RseI	CAYNNNNRTG	2 cut(s)	1740, 1976
SacI	GAGCTC	2 cut(s)	839, 1587
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	6 cut(s)	173, 372, 1565, 1698, 1982, 2005
Sau3AI	GATC	2 cut(s)	1597, 1654
Sau96I	GGNCC	2 cut(s)	1110, 1470
SchI	GAGTC	2 cut(s)	14, 914
ScrFI	CCNGG	5 cut(s)	1355, 1421, 1574, 1751, 1822
SduI	GDGCHC	4 cut(s)	839, 1070, 1587, 1792
SfaNI	GCATC	4 cut(s)	1348, 1502, 1792, 1885
SfcI	CTRYAG	4 cut(s)	387, 1071, 1530, 1639
SfuI	TTCGAA	1 cut(s)	886
SmiMI	CAYNNNNRTG	2 cut(s)	1740, 1976
SpeI	ACTAGT	1 cut(s)	1199
SphI	GCATGC	2 cut(s)	1265, 1952
SsiI	CCGC	4 cut(s)	55, 159, 758, 1281
SspI	AATATT	1 cut(s)	1296
SspMI	CTAG	6 cut(s)	279, 431, 822, 927, 1200, 1448
SstI	GAGCTC	2 cut(s)	839, 1587
StyD4I	CCNGG	5 cut(s)	1353, 1419, 1572, 1749, 1820
StyI	CCWWGG	3 cut(s)	821, 1011, 1106
TaaI	ACNGT	4 cut(s)	495, 535, 1505, 1534
TaqI	TCGA	4 cut(s)	886, 916, 1152, 1486
TatI	WGTACW	1 cut(s)	1344
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	3 cut(s)	232, 944, 1157
Tru1I	TTAA	6 cut(s)	173, 372, 1565, 1698, 1982, 2005
Tru9I	TTAA	6 cut(s)	173, 372, 1565, 1698, 1982, 2005
TscAI	CASTG	1 cut(s)	1368
TseI	GCWGC	9 cut(s)	254, 302, 407, 449, 470, 473, 974, 1016, 1175
TspDTI	ATGAA	9 cut(s)	245, 429, 888, 1131, 1143, 1326, 1574, 1674, 1752
TspGWI	ACGGA	2 cut(s)	13, 1153
TspRI	CASTG	1 cut(s)	1368
VneI	GTGCAC	1 cut(s)	1788
XapI	RAATTY	4 cut(s)	109, 643, 1675, 1706
XceI	RCATGY	3 cut(s)	1265, 1345, 1952
XmaJI	CCTAGG	1 cut(s)	821
XmiI	GTMKAC	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	1676
XspI	CTAG	6 cut(s)	279, 431, 822, 927, 1200, 1448
Zsp2I	ATGCAT	2 cut(s)	1263, 1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.