Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005766

Physical Location & Seq

Genomic Coordinates Forward (+)

15368270 .. 15375744

Gene Structure 7475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1194500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGGAAGCGATACTCCGAGACTGTGTCCAGCACAGTCTCCGCGATTTCATGCACCGAAACGCCATTTTCGTATGCGAACGCCTCTGCGCCGAGTTCCCCTCCGAGACGAATTTACAGTTGTTAGCTGGCTGTTACTTGCAAAGCAATCAAGCTTATGCTGCATACCATATTTTAAAGGGAACACAAGTGGCTCAATCCCGCTACTTGTTTGCAATATCATGCTTTCAGATGGATCTTCTTGGTGAAGCAGAAGCAGCGTTATGTCCTGCTAATGAGCCTGGTGCAGAGGTTCCAAATGGCGCAGCTGGTCATTACCTTCTGGGGCTTATATACAGGTATACTGACAGAAGGAAAAGTGCCATCCATCACTTTAAGCAGGCTTTGACTATGGATCCTTGTATGTGGGCTGCATATGAAGAGCTGTGCGTATTAGGCTCTGCTGAAGAAGCAGCTGTAGTTTTCGGTGAAGCTGCTGTTCTTTCCATACAAAAACAGTATCTACATCATGGATTAGCTTCTCAAAGTTTACTTACCCTGAATGAGGACTGCAGTTTAGTTTCTGGTAGGAACTTTAGTTCCGAAGACGTTAGCCAGAGACAATTCAAACATGTTCAAGGAAATAATATAAGAGATATGTCTGGAAGTTCTCATGTTAGTTTGGGAGGAGCTTCTGGTCAGCCTGTAAATGGCAGTTCTGGTTCATCTTTCTTTAACACTCCTTCACCAATGCCCATGCAGTTGTCAGGTGTTGCTCCACCAGCTCTGTGTAGAATTGGTCAGCCAAATGGCCCAAACCTAAACACAGGTACTGATAGCTCTCCAAAGTCAAATGTGAACTCTACAATTCAAGCCCCCAGAAGAAAGTTTGTTGATGAAGGAAAACTACGCAAGATTTCAAGCAGGTTGTCTTTTGATTCTGGCAACCGGCGGAGCAATAGACTTGCTGCTGAAGCAGGGACCAACACTAATGCAAGTGCCTCAGTGACAGCCGGAAATGGAACTACCAATTCATCTAAATATCTTGGAAGTTCCAAGTTGAGCTCTGTTGCGCGTTCCTTGGCAAATCGGAAGGGGCAGCCATGGGCCAATGAAAATGTTGATGAAGGAATGCGCAATGAGACATTCGATGATTCCCGTTCAACAACTGCGGCAGTAGCTTCTGGTTTCACTCCCTCTAGTGATGCCAGATATCTTGAACAAGAAGGAGCAACCTTGTCAAGTACTGGAGGTATTATCAATGTTTCAAGAGTTGCCACTGGTGCTTCAGAATTATTGAGTCTTTTGAGAACTCTCGGGGAAGGCTATAGACTTTCCTGCATGTACAGATGCCAGGATGCACTGGATGTCTATCTCAAACTTCCATACAAGCATTACAATACAGGATGGGTGCTTTCCCAGGTTGGAAAAGCTTACTGTGAATTGATAGACTATTCAGAAGCTGATCGGGCCTTCAGTCTTGCTCGTCAGGCATCACCTTACAGTTTAGAAGGAATGGATATGTATTCTACAGTTCTTTATCATTTGAAGGAAGATATGAAGTTAAGTTACCTGGCTCAAGAACTGATATCAACGGACCGCTTAGCTCCTCAGTCGTGGGTTGCAATGGGAAATTGTTATAGCTTGCAGAAAGACCATGAAACTGCTCTGAAATTTTTCCAGCGAGCAGTTCAAGTCAATTCAAGATTCACATATGCACATACCCTTTGCGGTCACGAATATGTAGCTCTAGAGGATTTTGAGAATGGAATAAAGAGCTATCAGACTGCACTTCGTATTGATGCAAGGCATTTTAACGCCTGGTATGGGCTTGGAATGGTTTATCATCGCCAAGAAAAGTTTGAGTTCTCAGAGCATCACTTCCGAACGGCTTTCCAAATTAACCCACGTTCTTCTGTTATTATGACGTATCTGGCCTCAGCACTGCATGCTTTAAAGAGAAGCGAAGAAGCTCTAGTGATGATGGAGAAAGCTATTAGAGCAGACAAGAAGAATCCACTTCCCATGTATCATAAGGCTAGTATACTAATGAGCTTAGAAAAATTTGATGAAGCTCTAGCAGTCTTAGAGGAGGTTAAAGAATATTCTCCTCGTGAAAGTAGTGTGTACGCTCTGATGGGTAAAATCTACAAGCGGCGTAATATGCACGAGAAGGCGATGCTTCATTTTGGTTATGCATTGGATTTGAAACCATCCGCAACTGATGTCGCTACCATTAAGGTGATTTGGGCATATTTCTTATTCTTTATTAACACCCACTATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005737 GO:0005819 GO:0005856 GO:0007275 GO:0007346 GO:0008150 GO:0009504 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010071 GO:0010154 GO:0015630 GO:0022414 GO:0022622 GO:0030154 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051726 GO:0061458 GO:0065007 GO:0090421 GO:0099402 GO:1902494 GO:1905392 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

755

Amino Acids

83.82

Weight (kDa)

7.85

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC3	PF12895	16 - 88	7.5e-17	Anaphase-promoting complex, cyclosome, subunit 3
TPR_1	PF00515	530 - 561	2.8e-06	Tetratricopeptide repeat
TPR_11	PF13414	570 - 610	8.9e-08	TPR repeat
TPR_12	PF13424	598 - 663	1.5e-06	Tetratricopeptide repeat
TPR_19	PF14559	643 - 708	1.8e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20000 AT2G20000
fragaria_vesca	FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910 FvH4_1g05910
malus_domestica	MD02G1061000.v1.1 MD15G1194500.v1.1
prunus_persica	Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1 Prupe.7G222000_v2.0.a1
pyrus_communis	pycom02g05010 pycom15g17410
rosa_chinensis	RchiOBHm_Chr2g0091551 RchiOBHm_Chr2g0091631
rosa_laevigata	RLG00000016236
rosa_multiflora	Rmu_sc0000897.1_g000018
rosa_roxburghii	Rroxscaffold_2G00149940
rosa_rugosa	Rorug02G0018700 Rorug02G0018700
rosa_samantha	Rh2AG063900 Rh2BG063300 Rh2CG065000 Rh2DG063400
rosa_wichuraiana	Rw2G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1112
Acc36I	ACCTGC	1 cut(s)	891
AccI	GTMKAC	2 cut(s)	338, 2020
AccII	CGCG	2 cut(s)	42, 1051
AciI	CCGC	8 cut(s)	40, 199, 928, 1148, 1576, 1707, 2131, 2193
AclWI	GGATC	3 cut(s)	240, 386, 399
AcsI	RAATTY	3 cut(s)	109, 1649, 2039
AcuI	CTGAAG	4 cut(s)	462, 969, 1248, 1435
AfaI	GTAC	4 cut(s)	808, 1222, 1322, 2105
AfiI	CCNNNNNNNGG	3 cut(s)	541, 686, 1803
AflIII	ACRYGT	1 cut(s)	607
AjnI	CCWGG	5 cut(s)	277, 1329, 1395, 1548, 1796
AloI	GAACNNNNNNTCC	4 cut(s)	559, 560, 591, 592
Alw21I	GWGCWC	1 cut(s)	1043
Alw26I	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
AlwI	GGATC	3 cut(s)	240, 386, 399
AlwNI	CAGNNNCTG	2 cut(s)	809, 1439
Ama87I	CYCGRG	1 cut(s)	1292
AoxI	GGCC	4 cut(s)	787, 1083, 1446, 1911
ApeKI	GCWGC	8 cut(s)	158, 254, 302, 407, 449, 470, 944, 1075
ApoI	RAATTY	3 cut(s)	109, 1649, 2039
Asp700I	GAANNNNTTC	1 cut(s)	1652
AspLEI	GCGC	4 cut(s)	89, 302, 1051, 1113
AspS9I	GGNCC	5 cut(s)	788, 957, 1083, 1446, 1573
AsuHPI	GGTGA	5 cut(s)	254, 476, 714, 1464, 2230
AvaI	CYCGRG	1 cut(s)	1292
AvaII	GGWCC	2 cut(s)	957, 1573
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	1043
BarI	GAAGNNNNNNTAC	4 cut(s)	867, 899, 1529, 1561
BauI	CACGAG	2 cut(s)	2088, 2144
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	1043
BbvCI	CCTCAGC	1 cut(s)	1915
BbvI	GCAGC	8 cut(s)	145, 266, 314, 394, 457, 461, 931, 1087
BccI	CCATC	7 cut(s)	223, 368, 372, 1377, 1954, 2107, 2197
BceAI	ACGGC	1 cut(s)	1881
BciT130I	CCWGG	5 cut(s)	279, 1331, 1397, 1550, 1798
BcoDI	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
BfaI	CTAG	5 cut(s)	1176, 1727, 1952, 2016, 2054
BfmI	CTRYAG	4 cut(s)	453, 547, 1303, 1506
BfuAI	ACCTGC	1 cut(s)	891
BlpI	GCTNAGC	1 cut(s)	1579
BmcAI	AGTACT	1 cut(s)	1222
Bme1390I	CCNGG	5 cut(s)	279, 1331, 1397, 1550, 1798
Bme18I	GGWCC	2 cut(s)	957, 1573
BmeT110I	CYCGRG	1 cut(s)	1292
BmgT120I	GGNCC	5 cut(s)	788, 957, 1083, 1446, 1573
BmiI	GGNNCC	3 cut(s)	291, 393, 958
BmrFI	CCNGG	5 cut(s)	279, 1331, 1397, 1550, 1798
BmsI	GCATC	7 cut(s)	1171, 1316, 1324, 1478, 1768, 1861, 2145
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	1245
Bpu10I	CCTNAGC	1 cut(s)	1915
Bpu1102I	GCTNAGC	1 cut(s)	1579
BpuEI	CTTGAG	1 cut(s)	1539
Bsa29I	ATCGAT	1 cut(s)	2260
BsaBI	GATNNNNATC	1 cut(s)	1347
BsaJI	CCNNGG	3 cut(s)	1056, 1079, 1395
Bsc4I	CCNNNNNNNGG	3 cut(s)	541, 686, 1803
Bse118I	RCCGGY	1 cut(s)	924
Bse1I	ACTGG	3 cut(s)	1228, 1261, 1344
Bse3DI	GCAATG	2 cut(s)	1120, 1608
Bse8I	GATNNNNATC	1 cut(s)	1347
BseBI	CCWGG	5 cut(s)	279, 1331, 1397, 1550, 1798
BseCI	ATCGAT	1 cut(s)	2260
BseDI	CCNNGG	3 cut(s)	1056, 1079, 1395
BseGI	GGATG	5 cut(s)	360, 1339, 1348, 1388, 2189
BseJI	GATNNNNATC	1 cut(s)	1347
BseLI	CCNNNNNNNGG	3 cut(s)	541, 686, 1803
BseMI	GCAATG	2 cut(s)	1120, 1608
BseMII	CTCAG	4 cut(s)	993, 1601, 1860, 1929
BseNI	ACTGG	3 cut(s)	1228, 1261, 1344
BseRI	GAGGAG	4 cut(s)	678, 1575, 2076, 2081
BseXI	GCAGC	8 cut(s)	145, 266, 314, 394, 457, 461, 931, 1087
BsgI	GTGCAG	2 cut(s)	303, 1749
Bsh1236I	CGCG	2 cut(s)	42, 1051
BshFI	GGCC	4 cut(s)	789, 1085, 1448, 1913
BshVI	ATCGAT	1 cut(s)	2260
BsiHKAI	GWGCWC	1 cut(s)	1043
BsiHKCI	CYCGRG	1 cut(s)	1292
BsiSI	CCGG	2 cut(s)	925, 990
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	3 cut(s)	541, 686, 1803
BsmAI	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	970
BsmI	GAATGC	1 cut(s)	1113
BsnI	GGCC	4 cut(s)	789, 1085, 1448, 1913
BsoBI	CYCGRG	1 cut(s)	1292
Bsp1286I	GDGCHC	1 cut(s)	1043
Bsp1407I	TGTACA	1 cut(s)	1320
Bsp143I	GATC	3 cut(s)	232, 391, 1441
Bsp1720I	GCTNAGC	1 cut(s)	1579
Bsp19I	CCATGG	1 cut(s)	1079
BspACI	CCGC	8 cut(s)	40, 199, 928, 1148, 1576, 1707, 2131, 2193
BspANI	GGCC	4 cut(s)	789, 1085, 1448, 1913
BspCNI	CTCAG	4 cut(s)	992, 1600, 1859, 1928
BspDI	ATCGAT	1 cut(s)	2260
BspFNI	CGCG	2 cut(s)	42, 1051
BspLI	GGNNCC	3 cut(s)	291, 393, 958
BspMAI	CTGCAG	1 cut(s)	551
BspMI	ACCTGC	1 cut(s)	891
BspPI	GGATC	3 cut(s)	240, 386, 399
BspQI	GCTCTTC	1 cut(s)	411
BsrDI	GCAATG	2 cut(s)	1120, 1608
BsrFI	RCCGGY	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	1320
BsrI	ACTGG	3 cut(s)	1228, 1261, 1344
BssAI	RCCGGY	1 cut(s)	924
BssECI	CCNNGG	3 cut(s)	1056, 1079, 1395
BssMI	GATC	3 cut(s)	232, 391, 1441
BssNAI	GTATAC	2 cut(s)	339, 2021
BssSI	CACGAG	2 cut(s)	2088, 2144
BssT1I	CCWWGG	2 cut(s)	1056, 1079
Bst1107I	GTATAC	2 cut(s)	339, 2021
Bst2BI	CACGAG	2 cut(s)	2088, 2144
Bst2UI	CCWGG	5 cut(s)	279, 1331, 1397, 1550, 1798
Bst4CI	ACNGT	7 cut(s)	23, 35, 117, 495, 1415, 1481, 1510
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	1925
BstAUI	TGTACA	1 cut(s)	1320
BstC8I	GCNNGC	5 cut(s)	127, 378, 1622, 1662, 1926
BstDEI	CTNAG	7 cut(s)	979, 1579, 1587, 1846, 1915, 2032, 2062
BstDSI	CCRYGG	1 cut(s)	1079
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	5 cut(s)	360, 1339, 1348, 1388, 2189
BstFNI	CGCG	2 cut(s)	42, 1051
BstHHI	GCGC	4 cut(s)	89, 302, 1051, 1113
BstKTI	GATC	3 cut(s)	235, 394, 1444
BstMAI	GTCTC	5 cut(s)	12, 41, 98, 589, 1112
BstMBI	GATC	3 cut(s)	232, 391, 1441
BstNI	CCWGG	5 cut(s)	279, 1331, 1397, 1550, 1798
BstNSI	RCATGY	3 cut(s)	611, 1321, 1928
BstSCI	CCNGG	5 cut(s)	277, 1329, 1395, 1548, 1796
BstSFI	CTRYAG	4 cut(s)	453, 547, 1303, 1506
BstUI	CGCG	2 cut(s)	42, 1051
BstV1I	GCAGC	8 cut(s)	145, 266, 314, 394, 457, 461, 931, 1087
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	2 cut(s)	232, 391
BstYI	RGATCY	2 cut(s)	232, 391
BstZ17I	GTATAC	2 cut(s)	339, 2021
Bsu15I	ATCGAT	1 cut(s)	2260
BsuRI	GGCC	4 cut(s)	789, 1085, 1448, 1913
BsuTUI	ATCGAT	1 cut(s)	2260
BtgI	CCRYGG	1 cut(s)	1079
BtgZI	GCGATG	2 cut(s)	1808, 2168
BtsCI	GGATG	5 cut(s)	360, 1339, 1348, 1388, 2189
BtsI	GCAGTG	1 cut(s)	1919
BtsIMutI	CAGTG	4 cut(s)	987, 1254, 1337, 1919
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	5 cut(s)	127, 378, 1622, 1662, 1926
CaiI	CAGNNNCTG	2 cut(s)	809, 1439
CfoI	GCGC	4 cut(s)	89, 302, 1051, 1113
Cfr10I	RCCGGY	1 cut(s)	924
Cfr13I	GGNCC	5 cut(s)	788, 957, 1083, 1446, 1573
ClaI	ATCGAT	1 cut(s)	2260
CpoI	CGGWCCG	1 cut(s)	1573
Csp6I	GTAC	4 cut(s)	807, 1221, 1321, 2104
CspI	CGGWCCG	1 cut(s)	1573
CviQI	GTAC	4 cut(s)	807, 1221, 1321, 2104
DdeI	CTNAG	7 cut(s)	979, 1579, 1587, 1846, 1915, 2032, 2062
DpnI	GATC	3 cut(s)	234, 393, 1443
DpnII	GATC	3 cut(s)	232, 391, 1441
DraI	TTTAAA	2 cut(s)	174, 1932
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	943
Ecl136II	GAGCTC	1 cut(s)	1041
Eco130I	CCWWGG	2 cut(s)	1056, 1079
Eco24I	GRGCYC	1 cut(s)	1043
Eco32I	GATATC	2 cut(s)	1190, 1566
Eco47I	GGWCC	2 cut(s)	957, 1573
Eco53kI	GAGCTC	1 cut(s)	1041
Eco57I	CTGAAG	4 cut(s)	462, 969, 1248, 1435
Eco88I	CYCGRG	1 cut(s)	1292
EcoICRI	GAGCTC	1 cut(s)	1041
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoRII	CCWGG	5 cut(s)	277, 1329, 1395, 1548, 1796
EcoRV	GATATC	2 cut(s)	1190, 1566
EcoT14I	CCWWGG	2 cut(s)	1056, 1079
EcoT22I	ATGCAT	1 cut(s)	2176
EcoT38I	GRGCYC	1 cut(s)	1043
ErhI	CCWWGG	2 cut(s)	1056, 1079
Esp3I	CGTCTC	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	970
FauI	CCCGC	1 cut(s)	206
FauNDI	CATATG	2 cut(s)	412, 1690
FblI	GTMKAC	2 cut(s)	338, 2020
FokI	GGATG	5 cut(s)	347, 1346, 1355, 1395, 2176
FriOI	GRGCYC	1 cut(s)	1043
FspBI	CTAG	5 cut(s)	1176, 1727, 1952, 2016, 2054
FspI	TGCGCA	1 cut(s)	1112
GlaI	GCGC	4 cut(s)	88, 301, 1050, 1112
GsuI	CTGGAG	1 cut(s)	1245
HaeIII	GGCC	4 cut(s)	789, 1085, 1448, 1913
HapII	CCGG	2 cut(s)	925, 990
HhaI	GCGC	4 cut(s)	89, 302, 1051, 1113
Hin6I	GCGC	4 cut(s)	87, 300, 1049, 1111
HinP1I	GCGC	4 cut(s)	87, 300, 1049, 1111
HindIII	AAGCTT	2 cut(s)	150, 1407
HinfI	GANTC	5 cut(s)	914, 1130, 1276, 1683, 1990
HpaII	CCGG	2 cut(s)	925, 990
HphI	GGTGA	5 cut(s)	254, 476, 714, 1464, 2230
Hpy166II	GTNNAC	5 cut(s)	339, 527, 835, 2021, 2104
Hpy188III	TCNNGA	8 cut(s)	639, 1193, 1245, 1556, 1680, 1712, 1727, 2090
Hpy8I	GTNNAC	5 cut(s)	339, 527, 835, 2021, 2104
HpyCH4III	ACNGT	7 cut(s)	23, 35, 117, 495, 1415, 1481, 1510
HpyCH4IV	ACGT	3 cut(s)	585, 1885, 1904
HpyF3I	CTNAG	7 cut(s)	979, 1579, 1587, 1846, 1915, 2032, 2062
HpySE526I	ACGT	3 cut(s)	585, 1885, 1904
HspAI	GCGC	4 cut(s)	87, 300, 1049, 1111
Kzo9I	GATC	3 cut(s)	232, 391, 1441
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	5 cut(s)	665, 757, 930, 1205, 1588
Lsp1109I	GCAGC	8 cut(s)	145, 266, 314, 394, 457, 461, 931, 1087
LweI	GCATC	7 cut(s)	1171, 1316, 1324, 1478, 1768, 1861, 2145
MaeI	CTAG	5 cut(s)	1176, 1727, 1952, 2016, 2054
MaeII	ACGT	3 cut(s)	585, 1885, 1904
MaeIII	GTNAC	4 cut(s)	131, 982, 1544, 1709
MalI	GATC	3 cut(s)	234, 393, 1443
MboI	GATC	3 cut(s)	232, 391, 1441
MboII	GAAGA	9 cut(s)	227, 428, 455, 593, 870, 1541, 1881, 1955, 1999
MflI	RGATCY	2 cut(s)	232, 391
MhlI	GDGCHC	1 cut(s)	1043
MlyI	GAGTC	1 cut(s)	1285
MmeI	TCCRAC	1 cut(s)	1381
Mph1103I	ATGCAT	1 cut(s)	2176
MroXI	GAANNNNTTC	1 cut(s)	1652
MslI	CAYNNNNRTG	2 cut(s)	1716, 2216
MspA1I	CMGCKG	2 cut(s)	305, 452
MspI	CCGG	2 cut(s)	925, 990
MspR9I	CCNGG	5 cut(s)	279, 1331, 1397, 1550, 1798
Mva1269I	GAATGC	1 cut(s)	1113
MvaI	CCWGG	5 cut(s)	279, 1331, 1397, 1550, 1798
MvnI	CGCG	2 cut(s)	42, 1051
NcoI	CCATGG	1 cut(s)	1079
NdeI	CATATG	2 cut(s)	412, 1690
NdeII	GATC	3 cut(s)	232, 391, 1441
NlaIV	GGNNCC	3 cut(s)	291, 393, 958
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	982, 1709
NsbI	TGCGCA	1 cut(s)	1112
NsiI	ATGCAT	1 cut(s)	2176
NspI	RCATGY	3 cut(s)	611, 1321, 1928
PaeI	GCATGC	1 cut(s)	1928
PciI	ACATGT	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	1113
PdmI	GAANNNNTTC	1 cut(s)	1652
PfeI	GAWTC	4 cut(s)	914, 1130, 1683, 1990
PflFI	GACNNNGTC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	1284
PpsI	GAGTC	1 cut(s)	1284
PscI	ACATGT	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	1043
Psp6I	CCWGG	5 cut(s)	277, 1329, 1395, 1548, 1796
PspGI	CCWGG	5 cut(s)	277, 1329, 1395, 1548, 1796
PspN4I	GGNNCC	3 cut(s)	291, 393, 958
PspPI	GGNCC	5 cut(s)	788, 957, 1083, 1446, 1573
PstI	CTGCAG	1 cut(s)	551
PstNI	CAGNNNCTG	2 cut(s)	809, 1439
PsuI	RGATCY	2 cut(s)	232, 391
PsyI	GACNNNGTC	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	305, 452
RsaI	GTAC	4 cut(s)	808, 1222, 1322, 2105
RsaNI	GTAC	4 cut(s)	807, 1221, 1321, 2104
RseI	CAYNNNNRTG	2 cut(s)	1716, 2216
Rsr2I	CGGWCCG	1 cut(s)	1573
RsrII	CGGWCCG	1 cut(s)	1573
SacI	GAGCTC	1 cut(s)	1043
SapI	GCTCTTC	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	232, 391, 1441
Sau96I	GGNCC	5 cut(s)	788, 957, 1083, 1446, 1573
ScaI	AGTACT	1 cut(s)	1222
SchI	GAGTC	1 cut(s)	1285
ScrFI	CCNGG	5 cut(s)	279, 1331, 1397, 1550, 1798
SduI	GDGCHC	1 cut(s)	1043
SfaNI	GCATC	7 cut(s)	1171, 1316, 1324, 1478, 1768, 1861, 2145
SfcI	CTRYAG	4 cut(s)	453, 547, 1303, 1506
SinI	GGWCC	2 cut(s)	957, 1573
SmiMI	CAYNNNNRTG	2 cut(s)	1716, 2216
SmlI	CTYRAG	1 cut(s)	1554
SmoI	CTYRAG	1 cut(s)	1554
SphI	GCATGC	1 cut(s)	1928
SsiI	CCGC	8 cut(s)	40, 199, 928, 1148, 1576, 1707, 2131, 2193
SspI	AATATT	1 cut(s)	2081
SspMI	CTAG	5 cut(s)	1176, 1727, 1952, 2016, 2054
SstI	GAGCTC	1 cut(s)	1043
StyD4I	CCNGG	5 cut(s)	277, 1329, 1395, 1548, 1796
StyI	CCWWGG	2 cut(s)	1056, 1079
TaaI	ACNGT	7 cut(s)	23, 35, 117, 495, 1415, 1481, 1510
TaiI	ACGT	3 cut(s)	588, 1888, 1907
TaqI	TCGA	2 cut(s)	1125, 2260
TatI	WGTACW	2 cut(s)	1220, 1320
TauI	GCSGC	2 cut(s)	1151, 2134
TfiI	GAWTC	4 cut(s)	914, 1130, 1683, 1990
TscAI	CASTG	4 cut(s)	987, 1261, 1344, 1926
TseFI	GTSAC	2 cut(s)	982, 1709
TseI	GCWGC	8 cut(s)	158, 254, 302, 407, 449, 470, 944, 1075
Tsp45I	GTSAC	2 cut(s)	982, 1709
TspGWI	ACGGA	1 cut(s)	1586
TspRI	CASTG	4 cut(s)	987, 1261, 1344, 1926
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	957, 1573
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	3 cut(s)	109, 1649, 2039
XbaI	TCTAGA	1 cut(s)	1726
XceI	RCATGY	3 cut(s)	611, 1321, 1928
XmiI	GTMKAC	2 cut(s)	338, 2020
XmnI	GAANNNNTTC	1 cut(s)	1652
XspI	CTAG	5 cut(s)	1176, 1727, 1952, 2016, 2054
ZrmI	AGTACT	1 cut(s)	1222
Zsp2I	ATGCAT	1 cut(s)	2176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.