MD02G1077800.v1.1

Glutamate-rich WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011879
Physical Location & Seq
Reverse (-)
6106330 .. 6109398
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1077800.v1.1.491

Sequence Viewer

Length: 1362 bp
ATGGTCAGAAGCATCAAGAACCCCAAGAAAGCCAAAAGAAAGGCCAAGGCCAGCTCCAAATTCCACTACCTCCTCCGTTGGTTATTTAATTATTTTAGTAAAATTAGGGGCTCAAAGAAAGGAGATGGGTCTTCTTCCTCTTCGAGACCGTCGATGCCGGCGAAGGTATGGCAACCGGGAGTGGACAAGCTGGAGGAAGGCGAAGAGCTCCACTTTGATATTGTGCGAGATACATTGGGGTTGGTTCGGACAGAGTTCCCCCATACCGTGTATTTCGTTGCAGGGACTCAGGCAGAAAAAGCTGCTTGGAACTCTCTTGGAATATTTAAAGTATCTAACATTTCCGGGAAAAAGCGCGAACTAGTGCCAGCTAAAGCCGCAGATGATGACTCTAATATGGATAGTGAGGACAGTGATAGTGATGACGATAGCGAGGATGAGGAGTCCGTTGGATCTGGTACACCTGTTTTGCAGTTGCGCAAGGTAGCTCATGAAGGATGTGTTAATCGTATACGCGCCATGACACAAAATCCACATATATGTGCATCTTGGGCAGACACTGGTCATGTGCAGATTTGGGACTTCAGTTCTCATTTGAATGCTTTAGCGGAGTCAGAGACTGAAGCTAGCCAGGGAGCTTCTTCAGTTTTTAACCAGGCTCCATTGGTTAAGTTTGGGCATAAAGACGAAGGGTTTGCTCTAGACTGGAGTCCACTTGTCCCTGGAAGGCTTCTATCTGGGGACTGCAAGAATTGTATACATTTATGGGAACCTACATCTGGTTCGACATGGAATGTTGATACTACTCCATATATTGGACATATTGCAAGCGTAGAGGATTTACAATGGAGTCCTACAGAACCTGATGTATTTGCCTCTTGTTCTGTCGATGGGAATATAGCAATATGGGATATCCGCATAAGGAAAGCACCAGGAACTTCTTTTAAGGCGCATAATGCAGATGTGAATGTTATGTCTTGGAATAGGCTGTGGCTAGTTGAAGGAGATTCAGTAGTGGCACATTGTGAATACCATAAACACCATATCACATCCATCGGGTGGAGTCCACACGAAGCCTCCACTTTGGCCGTGACGTCTTCTGACAATCAGCTGACAATATGGGATCTATCTTTGGAAAATGATGAGGAGGAAGAGGCAGAATTCAAAGCGAAGACAAAAGAGGAAGTGAATGCTCCAAAAGATTTACCTCCGCAGCTTCTATTTGTTCATCAGGGACAGAAGGACTTGAAAGAACTTCATTGGCATACTCAGATTCCTGGCATGCCCGTTTCAACTGCGGCTGATGGTTATAATATTCTGATGCCTTCAAACATACAGACTACCCTTCCCTCTGATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

454

Amino Acids

50.27

Weight (kDa)

5.43

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 164 - 329 7.8e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 227 - 328 2e-13 THOC3 beta-propeller domain
Beta-prop_EIPR1 PF23609 249 - 328 6.9e-06 EIPR1 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19540
fragaria_vesca FvH4_1g07300
malus_domestica MD02G1077800.v1.1 MD15G1206400.v1.1
prunus_persica Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1
pyrus_communis pycom02g06200
rosa_chinensis RchiOBHm_Chr2g0093231
rosa_laevigata RLG00000016380
rosa_multiflora Rmu_sc0003724.1_g000014 Rmu_sc0037462.1_g000001
rosa_roxburghii Rroxscaffold_2G00148390
rosa_rugosa Rorug02G0033700
rosa_samantha Rh2AG079900 Rh2BG080800 Rh2CG083200 Rh2DG078800
rosa_wichuraiana Rw2G006710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1311
AatII GACGTC 1 cut(s) 1097
Acc16I TGCGCA 1 cut(s) 479
AccB7I CCANNNNNTGG 2 cut(s) 815, 1059
AccI GTMKAC 2 cut(s) 511, 757
AccII CGCG 2 cut(s) 357, 516
AciI CCGC 5 cut(s) 378, 608, 916, 1211, 1298
AclWI GGATC 2 cut(s) 460, 1131
AcoI YGGCCR 1 cut(s) 1086
AcsI RAATTY 2 cut(s) 59, 1160
AcuI CTGAAG 3 cut(s) 568, 627, 642
AcyI GRCGYC 1 cut(s) 1094
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 3 cut(s) 779, 815, 1059
AgsI TTSAA 6 cut(s) 598, 1001, 1165, 1249, 1293, 1329
AhlI ACTAGT 1 cut(s) 361
AjnI CCWGG 5 cut(s) 630, 654, 721, 931, 1276
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 139, 611
AlwI GGATC 2 cut(s) 460, 1131
AlwNI CAGNNNCTG 3 cut(s) 560, 620, 863
AoxI GGCC 3 cut(s) 42, 48, 1086
ApeKI GCWGC 2 cut(s) 302, 1213
ApoI RAATTY 2 cut(s) 59, 1160
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
AspLEI GCGC 4 cut(s) 357, 480, 518, 952
AsuC2I CCSGG 2 cut(s) 177, 346
AsuNHI GCTAGC 1 cut(s) 626
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BanII GRGCYC 2 cut(s) 113, 210
BbsI GAAGAC 3 cut(s) 123, 1089, 1178
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 289, 1225
BccI CCATC 4 cut(s) 119, 884, 1061, 1298
BceAI ACGGC 1 cut(s) 1073
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 5 cut(s) 632, 656, 723, 933, 1278
BcnI CCSGG 2 cut(s) 177, 346
BcoDI GTCTC 2 cut(s) 139, 611
BcuI ACTAGT 1 cut(s) 361
BfaI CTAG 4 cut(s) 362, 627, 701, 995
BfmI CTRYAG 1 cut(s) 855
BisI GCNGC 4 cut(s) 303, 378, 1214, 1299
BlsI GCNGC 4 cut(s) 304, 379, 1215, 1300
Bme1390I CCNGG 7 cut(s) 177, 346, 632, 656, 723, 933, 1278
BmiI GGNNCC 2 cut(s) 660, 771
BmrFI CCNGG 7 cut(s) 177, 346, 632, 656, 723, 933, 1278
BmsI GCATC 4 cut(s) 21, 144, 554, 1311
BmtI GCTAGC 1 cut(s) 630
BoxI GACNNNNGTC 2 cut(s) 561, 708
BpiI GAAGAC 3 cut(s) 123, 1089, 1178
BpmI CTGGAG 2 cut(s) 212, 727
BpuMI CCSGG 2 cut(s) 177, 346
BsaHI GRCGYC 1 cut(s) 1094
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 45, 631, 721
BsaXI ACNNNNNCTCC 4 cut(s) 996, 1026, 1061, 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 779, 815, 1059
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 565, 710
BseBI CCWGG 5 cut(s) 632, 656, 723, 933, 1278
BseDI CCNNGG 3 cut(s) 45, 631, 721
BseGI GGATG 3 cut(s) 442, 503, 1049
BseLI CCNNNNNNNGG 3 cut(s) 779, 815, 1059
BseMII CTCAG 2 cut(s) 302, 1283
BseNI ACTGG 2 cut(s) 565, 710
BseRI GAGGAG 3 cut(s) 62, 455, 1160
BseXI GCAGC 2 cut(s) 289, 1225
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 357, 516
BshFI GGCC 3 cut(s) 44, 50, 1088
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 3 cut(s) 158, 176, 345
BslFI GGGAC 5 cut(s) 298, 593, 704, 755, 1248
BslI CCNNNNNNNGG 3 cut(s) 779, 815, 1059
BsmAI GTCTC 2 cut(s) 139, 611
BsmFI GGGAC 5 cut(s) 298, 593, 704, 755, 1248
BsmI GAATGC 2 cut(s) 604, 1195
BsnI GGCC 3 cut(s) 44, 50, 1088
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 113, 210
Bsp143I GATC 3 cut(s) 452, 1123, 1354
BspACI CCGC 5 cut(s) 378, 608, 916, 1211, 1298
BspANI GGCC 3 cut(s) 44, 50, 1088
BspCNI CTCAG 2 cut(s) 301, 1282
BspFNI CGCG 2 cut(s) 357, 516
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 660, 771
BspOI GCTAGC 1 cut(s) 630
BspPI GGATC 2 cut(s) 460, 1131
BspQI GCTCTTC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 565, 710
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 45, 631, 721
BssMI GATC 3 cut(s) 452, 1123, 1354
BssNAI GTATAC 2 cut(s) 512, 758
BssNI GRCGYC 1 cut(s) 1094
BssT1I CCWWGG 1 cut(s) 45
Bst1107I GTATAC 2 cut(s) 512, 758
Bst2UI CCWGG 5 cut(s) 632, 656, 723, 933, 1278
Bst4CI ACNGT 3 cut(s) 150, 268, 413
Bst6I CTCTTC 3 cut(s) 145, 198, 1146
BstACI GRCGYC 1 cut(s) 1094
BstC8I GCNNGC 6 cut(s) 52, 159, 369, 628, 829, 1283
BstDEI CTNAG 2 cut(s) 288, 1269
BstF5I GGATG 3 cut(s) 442, 503, 1049
BstFNI CGCG 2 cut(s) 357, 516
BstHHI GCGC 4 cut(s) 357, 480, 518, 952
BstKTI GATC 3 cut(s) 455, 1126, 1357
BstMAI GTCTC 2 cut(s) 139, 611
BstMBI GATC 3 cut(s) 452, 1123, 1354
BstMWI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
BstNI CCWGG 5 cut(s) 632, 656, 723, 933, 1278
BstNSI RCATGY 1 cut(s) 1285
BstPAI GACNNNNGTC 2 cut(s) 561, 708
BstSCI CCNGG 7 cut(s) 175, 344, 630, 654, 721, 931, 1276
BstSFI CTRYAG 1 cut(s) 855
BstUI CGCG 2 cut(s) 357, 516
BstV1I GCAGC 2 cut(s) 289, 1225
BstV2I GAAGAC 3 cut(s) 123, 1089, 1178
BstX2I RGATCY 2 cut(s) 452, 1123
BstYI RGATCY 2 cut(s) 452, 1123
BstZ17I GTATAC 2 cut(s) 512, 758
BsuRI GGCC 3 cut(s) 44, 50, 1088
BtsCI GGATG 3 cut(s) 442, 503, 1049
BtsIMutI CAGTG 2 cut(s) 418, 558
Cac8I GCNNGC 6 cut(s) 52, 159, 369, 628, 829, 1283
CaiI CAGNNNCTG 3 cut(s) 560, 620, 863
CciI TCATGA 1 cut(s) 490
CfoI GCGC 4 cut(s) 357, 480, 518, 952
Cfr10I RCCGGY 1 cut(s) 157
Csp6I GTAC 1 cut(s) 459
CviAII CATG 5 cut(s) 491, 520, 566, 789, 1282
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 288, 1269
DpnI GATC 3 cut(s) 454, 1125, 1356
DpnII GATC 3 cut(s) 452, 1123, 1354
DraI TTTAAA 1 cut(s) 328
DraIII CACNNNGTG 1 cut(s) 1025
EaeI YGGCCR 1 cut(s) 1086
Eam1104I CTCTTC 3 cut(s) 145, 198, 1146
EarI CTCTTC 3 cut(s) 145, 198, 1146
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 113, 210
Eco31I GGTCTC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 913
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 3 cut(s) 568, 627, 642
EcoICRI GAGCTC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 1160
EcoRII CCWGG 5 cut(s) 630, 654, 721, 931, 1276
EcoRV GATATC 1 cut(s) 913
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 113, 210
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 494, 523, 569, 792, 1285
FaqI GGGAC 5 cut(s) 298, 593, 704, 755, 1248
FatI CATG 5 cut(s) 490, 519, 565, 788, 1281
FblI GTMKAC 2 cut(s) 511, 757
Fnu4HI GCNGC 4 cut(s) 303, 378, 1214, 1299
FokI GGATG 3 cut(s) 449, 510, 1036
FriOI GRGCYC 2 cut(s) 113, 210
Fsp4HI GCNGC 4 cut(s) 303, 378, 1214, 1299
FspBI CTAG 4 cut(s) 362, 627, 701, 995
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 4 cut(s) 356, 479, 517, 951
GluI GCNGC 4 cut(s) 303, 378, 1214, 1299
GsuI CTGGAG 2 cut(s) 212, 727
HaeIII GGCC 3 cut(s) 44, 50, 1088
HapII CCGG 3 cut(s) 158, 176, 345
HhaI GCGC 4 cut(s) 357, 480, 518, 952
Hin1I GRCGYC 1 cut(s) 1094
Hin1II CATG 5 cut(s) 494, 523, 569, 792, 1285
Hin6I GCGC 4 cut(s) 355, 478, 516, 950
HinP1I GCGC 4 cut(s) 355, 478, 516, 950
HinfI GANTC 9 cut(s) 286, 389, 443, 611, 709, 850, 1007, 1063, 1273
HpaII CCGG 3 cut(s) 158, 176, 345
Hpy166II GTNNAC 6 cut(s) 184, 461, 512, 713, 758, 1067
Hpy188I TCNGA 7 cut(s) 8, 249, 616, 1102, 1272, 1320, 1354
Hpy188III TCNNGA 4 cut(s) 16, 144, 491, 701
Hpy8I GTNNAC 6 cut(s) 184, 461, 512, 713, 758, 1067
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 9 cut(s) 157, 191, 488, 683, 720, 995, 1234, 1335, 1355
HpyCH4III ACNGT 3 cut(s) 150, 268, 413
HpyCH4IV ACGT 1 cut(s) 1094
HpyCH4V TGCA 7 cut(s) 281, 472, 545, 571, 747, 827, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
HpyF3I CTNAG 2 cut(s) 288, 1269
HpySE526I ACGT 1 cut(s) 1094
Hsp92I GRCGYC 1 cut(s) 1094
Hsp92II CATG 5 cut(s) 494, 523, 569, 792, 1285
HspAI GCGC 4 cut(s) 355, 478, 516, 950
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 3 cut(s) 452, 1123, 1354
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 5 cut(s) 59, 213, 635, 664, 1198
Lsp1109I GCAGC 2 cut(s) 289, 1225
LweI GCATC 4 cut(s) 21, 144, 554, 1311
MaeI CTAG 4 cut(s) 362, 627, 701, 995
MaeII ACGT 1 cut(s) 1094
MaeIII GTNAC 1 cut(s) 1090
MalI GATC 3 cut(s) 454, 1125, 1356
MboI GATC 3 cut(s) 452, 1123, 1354
MboII GAAGA 8 cut(s) 123, 126, 132, 215, 633, 1089, 1163, 1183
MflI RGATCY 2 cut(s) 452, 1123
MhlI GDGCHC 2 cut(s) 113, 210
MluCI AATT 5 cut(s) 59, 88, 102, 751, 1160
MlyI GAGTC 7 cut(s) 280, 383, 452, 620, 718, 859, 1072
MmeI TCCRAC 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 6 cut(s) 87, 327, 504, 651, 669, 945
MslI CAYNNNNRTG 3 cut(s) 538, 540, 597
MspA1I CMGCKG 1 cut(s) 1111
MspI CCGG 3 cut(s) 158, 176, 345
MspR9I CCNGG 7 cut(s) 177, 346, 632, 656, 723, 933, 1278
Mva1269I GAATGC 2 cut(s) 604, 1195
MvaI CCWGG 5 cut(s) 632, 656, 723, 933, 1278
MvnI CGCG 2 cut(s) 357, 516
MwoI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 177, 346
NdeII GATC 3 cut(s) 452, 1123, 1354
NgoMIV GCCGGC 1 cut(s) 157
NheI GCTAGC 1 cut(s) 626
NlaIII CATG 5 cut(s) 494, 523, 569, 792, 1285
NlaIV GGNNCC 2 cut(s) 660, 771
NmuCI GTSAC 1 cut(s) 1090
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 1 cut(s) 1285
PaeI GCATGC 1 cut(s) 1285
PagI TCATGA 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 158
PctI GAATGC 2 cut(s) 604, 1195
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 1007, 1273
PflMI CCANNNNNTGG 2 cut(s) 815, 1059
PfoI TCCNGGA 1 cut(s) 344
PkrI GCNGC 4 cut(s) 304, 379, 1215, 1300
PleI GAGTC 7 cut(s) 280, 383, 451, 619, 717, 858, 1071
PpsI GAGTC 7 cut(s) 280, 383, 451, 619, 717, 858, 1071
PshAI GACNNNNGTC 2 cut(s) 561, 708
PsiI TTATAA 1 cut(s) 1311
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 5 cut(s) 630, 654, 721, 931, 1276
PspGI CCWGG 5 cut(s) 630, 654, 721, 931, 1276
PspN4I GGNNCC 2 cut(s) 660, 771
PstNI CAGNNNCTG 3 cut(s) 560, 620, 863
PsuI RGATCY 2 cut(s) 452, 1123
PvuII CAGCTG 1 cut(s) 1111
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 3 cut(s) 538, 540, 597
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 6 cut(s) 87, 327, 504, 651, 669, 945
SatI GCNGC 4 cut(s) 303, 378, 1214, 1299
Sau3AI GATC 3 cut(s) 452, 1123, 1354
SchI GAGTC 7 cut(s) 280, 383, 452, 620, 718, 859, 1072
ScrFI CCNGG 7 cut(s) 177, 346, 632, 656, 723, 933, 1278
SduI GDGCHC 2 cut(s) 113, 210
SfaNI GCATC 4 cut(s) 21, 144, 554, 1311
SfcI CTRYAG 1 cut(s) 855
SmiMI CAYNNNNRTG 3 cut(s) 538, 540, 597
SpeI ACTAGT 1 cut(s) 361
SphI GCATGC 1 cut(s) 1285
Sse9I AATT 5 cut(s) 59, 88, 102, 751, 1160
SsiI CCGC 5 cut(s) 378, 608, 916, 1211, 1298
SspI AATATT 2 cut(s) 324, 1315
SspMI CTAG 4 cut(s) 362, 627, 701, 995
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 7 cut(s) 175, 344, 630, 654, 721, 931, 1276
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 150, 268, 413
TaiI ACGT 1 cut(s) 1097
TaqI TCGA 4 cut(s) 143, 152, 785, 888
TasI AATT 5 cut(s) 59, 88, 102, 751, 1160
TauI GCSGC 2 cut(s) 380, 1301
TfiI GAWTC 2 cut(s) 1007, 1273
Tru1I TTAA 6 cut(s) 87, 327, 504, 651, 669, 945
Tru9I TTAA 6 cut(s) 87, 327, 504, 651, 669, 945
TscAI CASTG 2 cut(s) 418, 565
TseFI GTSAC 1 cut(s) 1090
TseI GCWGC 2 cut(s) 302, 1213
Tsp45I GTSAC 1 cut(s) 1090
TspDTI ATGAA 3 cut(s) 507, 1217, 1247
TspGWI ACGGA 2 cut(s) 65, 436
TspRI CASTG 2 cut(s) 418, 565
Van91I CCANNNNNTGG 2 cut(s) 815, 1059
XapI RAATTY 2 cut(s) 59, 1160
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 1285
XmiI GTMKAC 2 cut(s) 511, 757
XspI CTAG 4 cut(s) 362, 627, 701, 995
ZraI GACGTC 1 cut(s) 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.