Rh2AG079900

Glutamate-rich WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011879
Physical Location & Seq
Reverse (-)
6645807 .. 6655779
9973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG079900.1

Sequence Viewer

Length: 2052 bp
ATGGAGGACTCCCATACTGATGACTCAGTTGCGATAAGCATTGGTCCGGATCGAAATATTTCTGAGGACGGCAGTTCTGCCGCAAGAGAAACAAGAAGTACTAGTCCGAAATGGCCAACAATGGAGGAACTTGTTACCCTCTTAGAAAAAACGGAGGATGTTAAGCTTCATAAGCCAGCATTCCTCTCGATGTGGGACAATAGGATATTTGTAATATCATGTGCATTTGCCGTCTTACTTGATCCTTTGTTTTCTTACATCTTTCTCATCAACGACGACAAGAAGTGTGTGATGGTGGACCGAAAGTTGAAGTTAGCATACGTTAGTCTACGATCAGCTACAGATATATCATATGCATTGGACATTATCTTTTGTTTATGGCGAATTCGGAATGGTAAGATACTTGAGGCCTGGGGAATGATGAGCACTGTTTCTTTGAATGGAAAGAGATCAGTGTCACCCCTTCTCCTTGTTCATATTTTTGTTGCTCTTCCACTTCCACAGGTAACACTACTCACTGCCAGAGGTGTTGATTCTGTTCTTCTTCTTTTTACTCTAATTCAATACACAGTACGAGTTTATCGCATCTATGGTTCGCTCGGGCAACAACCTAATATAGCAACTGTAAAAGGAAGTTGGCTTAAAGCTACATTGGATTTTTTGCCCTTCATCCTTGCTGCTCATGGCTCCAAGAAGGGAGATGGGTCTTCTTCGTCTTCAGGGCCATCAATGCCAGCGAAGGTGTGGCAGCCAGGTGTGGACAAATTGGAGGAAGGAGAAGAGCTCCAGTGTGACCCTTCAGCTTACAACTCTCTTCATGCCTTCCATATTGGTTGGCCTTGTCTCAGCTTTGATATTGTACGAGATACATTGGGGTTGGTGAGGACAGAGTTCCCTCATACGGTGTACTTTGTTGCTGGGACTCAGGCAGAGAAAGCTTCTTGGAACTCTCTTAGCATATTTAAGGTATCCAACATTTCTGGGAAAAAGCGCGAACCAGTGCCAACTAAATCTGGAGATGATGAGTCGAATATGGATAGTGAGGATAGTGATAGTGATGAAGATAGTGATGGGGAGGAGCTTGAAGGATCTGGCTCACCAATTTTGCAGTTGCGCAAGGTTACTCATGAAGGATGTGTGAATCGTATACGTGCCATGACACAAAGTCCTCATATATGTGCATCTTGGGGAGATACTGGTCATGTGCAGGTCTGGGACTTCAGTTCTCATCTGAATGCTTTAGCAGAATCAGAATCAGAAGTTAGTCAAGGACCTTCTAACCAAGCTCCATTGTTTAAGTTTGGGCATAAAGATGAAGGATTCGCTCTCGACTGGAGTCCTCTTGTAACTGGAAGGCTTCTATCTGGGGACTGCAAGAGTAATATACATTTGTGGGAACCTACATCTGGTGGAACATGGAATGTTGATACCACTCCGTATATTGGGCATATTGCAAGCGTGGAAGATCTGCAGTGGAGCCCTACAGAAGCTGATGTTTTTGCCTCTTGTTCCGTGGATGGTAATATAGCAATATGGGATACCCGTTTAGGGAAGTCACCTGCAGCTTCTTTTAAGGCGCATAATGCAGATGTGAATGTTATTTCTTGGAACAGGCTGGCTAGCTGTATGTTAGCATCCGGAAGTGATGATGGTACCTTTTCCATCCGTGACCTTAGATTGCTTAAGGGAGGAGATTCTGTAGTGGCACATTTTGAATACCATAAACACCCTATTACATCCATCGAATGGAGTCCACATGAAGCTTCTACTTTGGCAGTGTCATCTGCTGACAATCAGCTAACAATATGGGACCTTTCTTTAGAAAATGACGAGGAAGAGGAGGCAGAATTTAAAGCTAAAACGAAAGAGGAAGTGAATGCTCCAAAAGATTTACCTCCACAACTTCTATTTGTTCATCAGGGACAAAAAGACTTGAAAGAACTTCATTGGCATTCACAAATTCCTGGCATGATCGTATCAACTGCAGCAGATGGTTATAATATTCTGATGCCTTCAAACATACAGACCACCCTTCCCTCCGATGGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

683

Amino Acids

75.19

Weight (kDa)

5.03

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1C_H4-bd PF12265 260 - 326 4.6e-13 Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_WDR5 PF25175 375 - 518 1.8e-06 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 376 - 554 2.6e-06 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 436 - 536 1.6e-12 THOC3 beta-propeller domain
WD40_Prp19 PF24814 443 - 559 2e-07 Prp19 WD40 domain
WDR55 PF24796 458 - 608 1.3e-08 WDR55
Beta-prop_EIPR1 PF23609 458 - 553 3.1e-06 EIPR1 beta-propeller
WD40_CDC20-Fz PF24807 459 - 621 4.2e-18 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 460 - 608 4.6e-16 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 464 - 604 1.9e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st PF25171 473 - 603 9.2e-07 WDR36/Utp21 first beta-propeller
Beta-prop_WDR5 PF25175 482 - 606 6e-17 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 493 - 607 1e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 504 - 608 3.8e-06 WDR36/Utp21 first beta-propeller
Beta-prop_THOC3 PF25174 527 - 607 1.4e-09 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19540
fragaria_vesca FvH4_1g07300
malus_domestica MD02G1077800.v1.1 MD15G1206400.v1.1
prunus_persica Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1
pyrus_communis pycom02g06200
rosa_chinensis RchiOBHm_Chr2g0093231
rosa_laevigata RLG00000016380
rosa_multiflora Rmu_sc0003724.1_g000014 Rmu_sc0037462.1_g000001
rosa_roxburghii Rroxscaffold_2G00148390
rosa_rugosa Rorug02G0033700
rosa_samantha Rh2AG079900 Rh2BG080800 Rh2CG083200 Rh2DG078800
rosa_wichuraiana Rw2G006710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1998
AarI CACCTGC 1 cut(s) 1567
Acc16I TGCGCA 1 cut(s) 1115
Acc36I ACCTGC 2 cut(s) 1198, 1567
Acc65I GGTACC 1 cut(s) 1652
AccB1I GGYRCC 1 cut(s) 1652
AccB7I CCANNNNNTGG 1 cut(s) 1746
AccI GTMKAC 2 cut(s) 328, 1147
AccII CGCG 1 cut(s) 993
AccIII TCCGGA 2 cut(s) 46, 1637
AciI CCGC 1 cut(s) 81
AclWI GGATC 3 cut(s) 57, 236, 1096
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 3 cut(s) 384, 1847, 1959
AcuI CTGAAG 3 cut(s) 702, 783, 1204
AfaI GTAC 5 cut(s) 100, 573, 861, 908, 1654
AfiI CCNNNNNNNGG 6 cut(s) 901, 1406, 1442, 1548, 1746, 2042
AflII CTTAAG 1 cut(s) 1682
AgsI TTSAA 7 cut(s) 310, 439, 563, 1085, 1715, 1936, 2016
AhdI GACNNNNNGTC 1 cut(s) 1164
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 3 cut(s) 410, 751, 1963
Alw21I GWGCWC 2 cut(s) 428, 786
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 3 cut(s) 57, 236, 1096
AlwNI CAGNNNCTG 1 cut(s) 1490
Ama87I CYCGRG 1 cut(s) 599
Aor13HI TCCGGA 2 cut(s) 46, 1637
AoxI GGCC 4 cut(s) 113, 408, 722, 836
ApeKI GCWGC 4 cut(s) 677, 748, 1562, 1985
ApoI RAATTY 3 cut(s) 384, 1847, 1959
Asp700I GAANNNNTTC 1 cut(s) 58
Asp718I GGTACC 1 cut(s) 1652
AspLEI GCGC 3 cut(s) 993, 1116, 1579
AspS9I GGNCC 6 cut(s) 44, 298, 722, 1271, 1810, 2045
AsuHPI GGTGA 4 cut(s) 450, 892, 1089, 1548
AsuNHI GCTAGC 1 cut(s) 1619
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 5 cut(s) 44, 298, 1271, 1810, 2045
BalI TGGCCA 1 cut(s) 115
BanI GGYRCC 1 cut(s) 1652
BanII GRGCYC 2 cut(s) 786, 1481
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
BbsI GAAGAC 2 cut(s) 699, 708
Bbv12I GWGCWC 2 cut(s) 428, 786
BbvI GCAGC 4 cut(s) 664, 760, 1574, 1997
BceAI ACGGC 2 cut(s) 85, 215
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 3 cut(s) 412, 753, 1965
BciVI GTATCC 2 cut(s) 979, 1531
BcoDI GTCTC 1 cut(s) 848
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 102, 1620
BfmI CTRYAG 6 cut(s) 339, 1469, 1482, 1560, 1698, 1983
BfrI CTTAAG 1 cut(s) 1682
BfuAI ACCTGC 2 cut(s) 1198, 1567
BfuI GTATCC 2 cut(s) 979, 1531
BglII AGATCT 1 cut(s) 1465
BisI GCNGC 5 cut(s) 81, 678, 749, 1563, 1986
BlsI GCNGC 5 cut(s) 82, 679, 750, 1564, 1987
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 3 cut(s) 412, 753, 1965
Bme18I GGWCC 5 cut(s) 44, 298, 1271, 1810, 2045
BmeRI GACNNNNNGTC 1 cut(s) 1164
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 6 cut(s) 44, 298, 722, 1271, 1810, 2045
BmiI GGNNCC 5 cut(s) 688, 1398, 1478, 1654, 1811
BmrFI CCNGG 3 cut(s) 412, 753, 1965
BmsI GCATC 4 cut(s) 594, 1190, 1643, 1998
BmtI GCTAGC 1 cut(s) 1623
BoxI GACNNNNGTC 1 cut(s) 1335
BpiI GAAGAC 2 cut(s) 699, 708
BplI GAGNNNNNCTC 2 cut(s) 768, 800
BpmI CTGGAG 3 cut(s) 770, 1035, 1354
BpuEI CTTGAG 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 1151
BsaJI CCNNGG 2 cut(s) 411, 1512
BsaWI WCCGGW 2 cut(s) 46, 1637
BsaXI ACNNNNNCTCC 4 cut(s) 450, 480, 1683, 1713
Bsc4I CCNNNNNNNGG 6 cut(s) 901, 1406, 1442, 1548, 1746, 2042
Bse1I ACTGG 5 cut(s) 787, 998, 1201, 1337, 1354
BseAI TCCGGA 2 cut(s) 46, 1637
BseBI CCWGG 3 cut(s) 412, 753, 1965
BseDI CCNNGG 2 cut(s) 411, 1512
BseGI GGATG 7 cut(s) 163, 669, 1139, 1522, 1634, 1662, 1736
BseLI CCNNNNNNNGG 6 cut(s) 901, 1406, 1442, 1548, 1746, 2042
BseMII CTCAG 4 cut(s) 39, 54, 859, 938
BseNI ACTGG 5 cut(s) 787, 998, 1201, 1337, 1354
BseRI GAGGAG 3 cut(s) 1091, 1704, 1853
BseXI GCAGC 4 cut(s) 664, 760, 1574, 1997
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 1 cut(s) 1226
Bsh1236I CGCG 1 cut(s) 993
BshFI GGCC 4 cut(s) 115, 410, 724, 838
BshNI GGYRCC 1 cut(s) 1652
BsiHKAI GWGCWC 2 cut(s) 428, 786
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 2 cut(s) 47, 1638
BslFI GGGAC 6 cut(s) 209, 934, 1229, 1382, 1823, 1935
BslI CCNNNNNNNGG 6 cut(s) 901, 1406, 1442, 1548, 1746, 2042
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 6 cut(s) 209, 934, 1229, 1382, 1823, 1935
BsmI GAATGC 4 cut(s) 179, 1240, 1882, 1951
BsnI GGCC 4 cut(s) 115, 410, 724, 838
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 3 cut(s) 428, 786, 1481
Bsp13I TCCGGA 2 cut(s) 46, 1637
Bsp143I GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
BspACI CCGC 1 cut(s) 81
BspANI GGCC 4 cut(s) 115, 410, 724, 838
BspCNI CTCAG 4 cut(s) 38, 55, 858, 937
BspEI TCCGGA 2 cut(s) 46, 1637
BspFNI CGCG 1 cut(s) 993
BspHI TCATGA 1 cut(s) 1126
BspLI GGNNCC 5 cut(s) 688, 1398, 1478, 1654, 1811
BspMAI CTGCAG 3 cut(s) 1473, 1564, 1987
BspMI ACCTGC 2 cut(s) 1198, 1567
BspOI GCTAGC 1 cut(s) 1623
BspPI GGATC 3 cut(s) 57, 236, 1096
BspQI GCTCTTC 2 cut(s) 495, 774
BspT107I GGYRCC 1 cut(s) 1652
BspTI CTTAAG 1 cut(s) 1682
BsrI ACTGG 5 cut(s) 787, 998, 1201, 1337, 1354
BssECI CCNNGG 2 cut(s) 411, 1512
BssMI GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
BssNAI GTATAC 1 cut(s) 1148
Bst1107I GTATAC 1 cut(s) 1148
Bst2UI CCWGG 3 cut(s) 412, 753, 1965
Bst4CI ACNGT 4 cut(s) 430, 571, 625, 904
Bst6I CTCTTC 4 cut(s) 495, 774, 819, 1830
BstAFI CTTAAG 1 cut(s) 1682
BstBAI YACGTR 1 cut(s) 1151
BstC8I GCNNGC 5 cut(s) 177, 735, 1456, 1617, 1621
BstDEI CTNAG 7 cut(s) 25, 63, 142, 845, 924, 953, 1673
BstDSI CCRYGG 1 cut(s) 1512
BstF5I GGATG 7 cut(s) 163, 669, 1139, 1522, 1634, 1662, 1736
BstFNI CGCG 1 cut(s) 993
BstHHI GCGC 3 cut(s) 993, 1116, 1579
BstKTI GATC 7 cut(s) 52, 244, 335, 452, 1091, 1468, 1974
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
BstMWI GCNNNNNNNGC 4 cut(s) 172, 730, 935, 1583
BstNI CCWGG 3 cut(s) 412, 753, 1965
BstPAI GACNNNNGTC 1 cut(s) 1335
BstSCI CCNGG 3 cut(s) 410, 751, 1963
BstSFI CTRYAG 6 cut(s) 339, 1469, 1482, 1560, 1698, 1983
BstUI CGCG 1 cut(s) 993
BstV1I GCAGC 4 cut(s) 664, 760, 1574, 1997
BstV2I GAAGAC 2 cut(s) 699, 708
BstX2I RGATCY 2 cut(s) 1088, 1465
BstYI RGATCY 2 cut(s) 1088, 1465
BstZ17I GTATAC 1 cut(s) 1148
BsuI GTATCC 2 cut(s) 979, 1531
BsuRI GGCC 4 cut(s) 115, 410, 724, 838
BtgI CCRYGG 1 cut(s) 1512
BtsCI GGATG 7 cut(s) 163, 669, 1139, 1522, 1634, 1662, 1736
BtsI GCAGTG 3 cut(s) 516, 1478, 1782
BtsIMutI CAGTG 7 cut(s) 426, 459, 516, 794, 1005, 1478, 1782
BveI ACCTGC 2 cut(s) 1198, 1567
Cac8I GCNNGC 5 cut(s) 177, 735, 1456, 1617, 1621
CaiI CAGNNNCTG 1 cut(s) 1490
CciI TCATGA 1 cut(s) 1126
CfoI GCGC 3 cut(s) 993, 1116, 1579
Cfr13I GGNCC 6 cut(s) 44, 298, 722, 1271, 1810, 2045
Csp6I GTAC 5 cut(s) 99, 572, 860, 907, 1653
CviAII CATG 9 cut(s) 219, 683, 818, 1127, 1156, 1202, 1416, 1757, 1969
CviQI GTAC 5 cut(s) 99, 572, 860, 907, 1653
DdeI CTNAG 7 cut(s) 25, 63, 142, 845, 924, 953, 1673
DpnI GATC 7 cut(s) 51, 243, 334, 451, 1090, 1467, 1973
DpnII GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
DraI TTTAAA 1 cut(s) 1852
DriI GACNNNNNGTC 1 cut(s) 1164
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 4 cut(s) 495, 774, 819, 1830
Eam1105I GACNNNNNGTC 1 cut(s) 1164
EarI CTCTTC 4 cut(s) 495, 774, 819, 1830
Ecl136II GAGCTC 1 cut(s) 784
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 2 cut(s) 786, 1481
Eco47I GGWCC 5 cut(s) 44, 298, 1271, 1810, 2045
Eco53kI GAGCTC 1 cut(s) 784
Eco57I CTGAAG 3 cut(s) 702, 783, 1204
Eco88I CYCGRG 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 784
EcoO109I RGGNCCY 2 cut(s) 1271, 1810
EcoRI GAATTC 1 cut(s) 384
EcoRII CCWGG 3 cut(s) 410, 751, 1963
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 2 cut(s) 786, 1481
FaeI CATG 9 cut(s) 222, 686, 821, 1130, 1159, 1205, 1419, 1760, 1972
FaqI GGGAC 6 cut(s) 209, 934, 1229, 1382, 1823, 1935
FatI CATG 9 cut(s) 218, 682, 817, 1126, 1155, 1201, 1415, 1756, 1968
FauNDI CATATG 1 cut(s) 352
FblI GTMKAC 2 cut(s) 328, 1147
Fnu4HI GCNGC 5 cut(s) 81, 678, 749, 1563, 1986
FokI GGATG 7 cut(s) 170, 656, 1146, 1529, 1621, 1649, 1723
FriOI GRGCYC 2 cut(s) 786, 1481
Fsp4HI GCNGC 5 cut(s) 81, 678, 749, 1563, 1986
FspBI CTAG 2 cut(s) 102, 1620
FspI TGCGCA 1 cut(s) 1115
GlaI GCGC 3 cut(s) 992, 1115, 1578
GluI GCNGC 5 cut(s) 81, 678, 749, 1563, 1986
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 3 cut(s) 770, 1035, 1354
HaeIII GGCC 4 cut(s) 115, 410, 724, 838
HapII CCGG 2 cut(s) 47, 1638
HhaI GCGC 3 cut(s) 993, 1116, 1579
Hin1II CATG 9 cut(s) 222, 686, 821, 1130, 1159, 1205, 1419, 1760, 1972
Hin6I GCGC 3 cut(s) 991, 1114, 1577
HinP1I GCGC 3 cut(s) 991, 1114, 1577
HindIII AAGCTT 3 cut(s) 164, 936, 1761
HpaII CCGG 2 cut(s) 47, 1638
HphI GGTGA 4 cut(s) 450, 892, 1089, 1548
Hpy166II GTNNAC 6 cut(s) 298, 329, 760, 907, 1148, 1754
Hpy188I TCNGA 8 cut(s) 64, 108, 390, 1233, 1252, 1258, 2007, 2041
Hpy188III TCNNGA 6 cut(s) 47, 187, 1014, 1127, 1328, 1638
Hpy8I GTNNAC 6 cut(s) 298, 329, 760, 907, 1148, 1754
Hpy99I CGWCG 1 cut(s) 278
HpyCH4III ACNGT 4 cut(s) 430, 571, 625, 904
HpyCH4IV ACGT 2 cut(s) 321, 1150
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 730, 935, 1583
HpyF3I CTNAG 7 cut(s) 25, 63, 142, 845, 924, 953, 1673
HpySE526I ACGT 2 cut(s) 321, 1150
Hsp92II CATG 9 cut(s) 222, 686, 821, 1130, 1159, 1205, 1419, 1760, 1972
HspAI GCGC 3 cut(s) 991, 1114, 1577
Kpn2I TCCGGA 2 cut(s) 46, 1637
KpnI GGTACC 1 cut(s) 1656
Kzo9I GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
LguI GCTCTTC 2 cut(s) 495, 774
LmnI GCTCC 6 cut(s) 692, 789, 1078, 1291, 1476, 1885
Lsp1109I GCAGC 4 cut(s) 664, 760, 1574, 1997
LweI GCATC 4 cut(s) 594, 1190, 1643, 1998
MaeI CTAG 2 cut(s) 102, 1620
MaeII ACGT 2 cut(s) 321, 1150
MaeIII GTNAC 8 cut(s) 133, 456, 505, 791, 1120, 1345, 1554, 1667
MalI GATC 7 cut(s) 51, 243, 334, 451, 1090, 1467, 1973
MboI GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
MflI RGATCY 2 cut(s) 1088, 1465
MhlI GDGCHC 3 cut(s) 428, 786, 1481
MlsI TGGCCA 1 cut(s) 115
MluCI AATT 6 cut(s) 384, 558, 764, 1101, 1847, 1959
MluNI TGGCCA 1 cut(s) 115
MlyI GAGTC 6 cut(s) 2, 17, 916, 1034, 1345, 1759
MmeI TCCRAC 1 cut(s) 996
Mox20I TGGCCA 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 358
MroI TCCGGA 2 cut(s) 46, 1637
MroXI GAANNNNTTC 1 cut(s) 58
MscI TGGCCA 1 cut(s) 115
MseI TTAA 7 cut(s) 162, 642, 963, 1296, 1572, 1683, 1851
MslI CAYNNNNRTG 4 cut(s) 18, 1176, 1233, 1311
Msp20I TGGCCA 1 cut(s) 115
MspCI CTTAAG 1 cut(s) 1682
MspI CCGG 2 cut(s) 47, 1638
MspR9I CCNGG 3 cut(s) 412, 753, 1965
Mva1269I GAATGC 4 cut(s) 179, 1240, 1882, 1951
MvaI CCWGG 3 cut(s) 412, 753, 1965
MvnI CGCG 1 cut(s) 993
MwoI GCNNNNNNNGC 4 cut(s) 172, 730, 935, 1583
NdeI CATATG 1 cut(s) 352
NdeII GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
NheI GCTAGC 1 cut(s) 1619
NlaIII CATG 9 cut(s) 222, 686, 821, 1130, 1159, 1205, 1419, 1760, 1972
NlaIV GGNNCC 5 cut(s) 688, 1398, 1478, 1654, 1811
NmuCI GTSAC 4 cut(s) 456, 791, 1554, 1667
NsbI TGCGCA 1 cut(s) 1115
NsiI ATGCAT 1 cut(s) 358
PagI TCATGA 1 cut(s) 1126
PaqCI CACCTGC 1 cut(s) 1567
PceI AGGCCT 1 cut(s) 410
PciSI GCTCTTC 2 cut(s) 495, 774
PctI GAATGC 4 cut(s) 179, 1240, 1882, 1951
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 6 cut(s) 533, 1141, 1247, 1253, 1320, 1694
PflMI CCANNNNNTGG 1 cut(s) 1746
PkrI GCNGC 5 cut(s) 82, 679, 750, 1564, 1987
PleI GAGTC 6 cut(s) 2, 17, 916, 1033, 1344, 1758
PpsI GAGTC 6 cut(s) 2, 17, 916, 1033, 1344, 1758
Ppu21I YACGTR 1 cut(s) 1151
PpuMI RGGWCCY 2 cut(s) 1271, 1810
PshAI GACNNNNGTC 1 cut(s) 1335
PsiI TTATAA 1 cut(s) 1998
Psp124BI GAGCTC 1 cut(s) 786
Psp5II RGGWCCY 2 cut(s) 1271, 1810
Psp6I CCWGG 3 cut(s) 410, 751, 1963
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 3 cut(s) 410, 751, 1963
PspN4I GGNNCC 5 cut(s) 688, 1398, 1478, 1654, 1811
PspPI GGNCC 6 cut(s) 44, 298, 722, 1271, 1810, 2045
PspPPI RGGWCCY 2 cut(s) 1271, 1810
PstI CTGCAG 3 cut(s) 1473, 1564, 1987
PstNI CAGNNNCTG 1 cut(s) 1490
PsuI RGATCY 2 cut(s) 1088, 1465
RsaI GTAC 5 cut(s) 100, 573, 861, 908, 1654
RsaNI GTAC 5 cut(s) 99, 572, 860, 907, 1653
RseI CAYNNNNRTG 4 cut(s) 18, 1176, 1233, 1311
SacI GAGCTC 1 cut(s) 786
SapI GCTCTTC 2 cut(s) 495, 774
SaqAI TTAA 7 cut(s) 162, 642, 963, 1296, 1572, 1683, 1851
SatI GCNGC 5 cut(s) 81, 678, 749, 1563, 1986
Sau3AI GATC 7 cut(s) 49, 241, 332, 449, 1088, 1465, 1971
Sau96I GGNCC 6 cut(s) 44, 298, 722, 1271, 1810, 2045
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 6 cut(s) 2, 17, 916, 1034, 1345, 1759
ScrFI CCNGG 3 cut(s) 412, 753, 1965
SduI GDGCHC 3 cut(s) 428, 786, 1481
SfaNI GCATC 4 cut(s) 594, 1190, 1643, 1998
SfcI CTRYAG 6 cut(s) 339, 1469, 1482, 1560, 1698, 1983
SinI GGWCC 5 cut(s) 44, 298, 1271, 1810, 2045
SmiMI CAYNNNNRTG 4 cut(s) 18, 1176, 1233, 1311
SmlI CTYRAG 2 cut(s) 404, 1682
SmoI CTYRAG 2 cut(s) 404, 1682
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 6 cut(s) 384, 558, 764, 1101, 1847, 1959
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 1 cut(s) 81
SspI AATATT 2 cut(s) 58, 2002
SspMI CTAG 2 cut(s) 102, 1620
SstI GAGCTC 1 cut(s) 786
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 3 cut(s) 410, 751, 1963
TaaI ACNGT 4 cut(s) 430, 571, 625, 904
TaiI ACGT 2 cut(s) 324, 1153
TaqI TCGA 5 cut(s) 52, 188, 1028, 1329, 1743
TaqII GACCGA 1 cut(s) 315
TasI AATT 6 cut(s) 384, 558, 764, 1101, 1847, 1959
TatI WGTACW 2 cut(s) 98, 906
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 6 cut(s) 533, 1141, 1247, 1253, 1320, 1694
Tru1I TTAA 7 cut(s) 162, 642, 963, 1296, 1572, 1683, 1851
Tru9I TTAA 7 cut(s) 162, 642, 963, 1296, 1572, 1683, 1851
TscAI CASTG 7 cut(s) 433, 459, 523, 794, 1005, 1478, 1782
TseFI GTSAC 4 cut(s) 456, 791, 1554, 1667
TseI GCWGC 4 cut(s) 677, 748, 1562, 1985
Tsp45I GTSAC 4 cut(s) 456, 791, 1554, 1667
TspGWI ACGGA 4 cut(s) 167, 1425, 1501, 1655
TspRI CASTG 7 cut(s) 433, 459, 523, 794, 1005, 1478, 1782
Van91I CCANNNNNTGG 1 cut(s) 1746
Vha464I CTTAAG 1 cut(s) 1682
VpaK11BI GGWCC 5 cut(s) 44, 298, 1271, 1810, 2045
XapI RAATTY 3 cut(s) 384, 1847, 1959
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmiI GTMKAC 2 cut(s) 328, 1147
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 2 cut(s) 102, 1620
ZrmI AGTACT 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.