Rh2CG083200

Glutamate-rich WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
6767187 .. 6770316
3130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG083200.1

Sequence Viewer

Length: 1173 bp
ATGGTTCGAAGCATTAAGAACCCTAAGAAAGCCAAAAGAAAGAACAAGGGCTCCAAGAAGGGAGATGGGTCTTCTTCGTCTTCAGGGCCATCAATGCCAGCGAAGGTGTGGCAGCCAGGTGTGGACAAATTGGAGGAAGGAGAAGAGCTCCAGTGTGACCCTTCAGCTTACAACTCTCTTCATGCCTTCCATATTGGTTGGCCTTGTCTAAGCTTTGATATTGTACGAGATACATTGGGGTTGGTGAGGACAGAGTTCCCTCATACGGTGTACTTTGTTGCTGGGACTCAGGCAGAGAAAGCTTCTTGGAACTCTCTTAGCATATTTAAGGTATCCAACATTTCTGGGAAAAAGCGCGAACCAGTGCCAACTAAATCTGGAGATGATGAGTCGAATATGGATAGTGATAGTGACGAAGATAGTGATGAGGAGGAGCTTGAAGGATCTGGCGCACCAATTTTGCAGTTGCGCAAGGTAACTCATGAAGGATGTGTGAATCGTATACGTGCCATGACACAAAGTCCTCATATATGTGCATCTTGGGGAGATACTGGTCATGTGCAGGTCTGGGACTTCAGTTCTCATCTGAATGCTTTAGCAGAATCAGAATCAGAAGTTAGTCAAGGACCTTCTAACCAAGCTCCAGTGTTTAAGTTTGGGCATAAAGATGAAGGATTCGCTCTCGACTGGAGTCCTCTTGTAACTGGAAGGCTTCTATCTGGGGACTGCAAGAGTAATATACATTTGTGGGAACCTACATCTGGTGGAACATGGAATGTTGATACCACTCCGTATATTGGGCATATTGCAAGCGTGGAAGATCTGCAGTGGAGCCCTACAGAAGCTGATGTTTTTGCCTCTTGTTCCGTGGATGGGAATATAGCAATATGGGATACCCGTTTAGGGAAGTCACCTGCAGCTTCTTTTAAGGCGCATAATGCAGATGTGAATGTTATTTCTTGGAACAGGCTGGCTAGCTGTATGTTAGCATCCGGAAGTGATGATGGTACCTTTTCCATCCGTGACCTTAGATTGCTTAAGGGACAAAAAGACTTGAAAGAACTTCATTGGCATTCACAAATTCCTGGCATGATCGTATCAACTGCAGCAGATGGTTATAATATTCTGATGCCTTCAAACATACAGACCACCCTTCCCTCCGATGGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

42.45

Weight (kDa)

5.38

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1C_H4-bd PF12265 48 - 114 2e-13 Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_WDR5 PF25175 160 - 303 5.1e-07 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 161 - 339 3.5e-07 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 221 - 353 1.1e-16 THOC3 beta-propeller domain
WD40_Prp19 PF24814 228 - 345 3.4e-08 Prp19 WD40 domain
Beta-prop_EIPR1 PF23609 243 - 338 1.1e-06 EIPR1 beta-propeller
Beta-prop_WDR3_1st PF25173 245 - 352 5.3e-09 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 260 - 345 3.2e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 267 - 359 3.9e-11 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 267 - 368 2.5e-11 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011879)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1119
AarI CACCTGC 1 cut(s) 922
Acc16I TGCGCA 1 cut(s) 470
Acc36I ACCTGC 2 cut(s) 553, 922
Acc65I GGTACC 1 cut(s) 1007
AccB1I GGYRCC 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 357
AccIII TCCGGA 1 cut(s) 992
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 1 cut(s) 1080
AcuI CTGAAG 3 cut(s) 66, 147, 559
AfaI GTAC 3 cut(s) 225, 272, 1009
AfiI CCNNNNNNNGG 6 cut(s) 265, 761, 797, 873, 903, 1163
AflII CTTAAG 1 cut(s) 1037
AgsI TTSAA 3 cut(s) 440, 1057, 1137
AhdI GACNNNNNGTC 1 cut(s) 519
AjnI CCWGG 2 cut(s) 115, 1084
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 9 cut(s) 148, 167, 213, 302, 436, 641, 845, 920, 978
AluI AGCT 9 cut(s) 148, 167, 213, 302, 436, 641, 845, 920, 978
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 1 cut(s) 451
AlwNI CAGNNNCTG 1 cut(s) 845
Aor13HI TCCGGA 1 cut(s) 992
AoxI GGCC 2 cut(s) 86, 200
ApeKI GCWGC 3 cut(s) 112, 917, 1106
ApoI RAATTY 1 cut(s) 1080
Asp718I GGTACC 1 cut(s) 1007
AspLEI GCGC 4 cut(s) 357, 452, 471, 934
AspS9I GGNCC 3 cut(s) 86, 626, 1166
AsuHPI GGTGA 2 cut(s) 256, 903
AsuII TTCGAA 1 cut(s) 7
AsuNHI GCTAGC 1 cut(s) 974
AvaII GGWCC 2 cut(s) 626, 1166
BanI GGYRCC 1 cut(s) 1007
BanII GRGCYC 3 cut(s) 53, 150, 836
BbsI GAAGAC 2 cut(s) 63, 72
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 124, 929, 1118
BccI CCATC 7 cut(s) 59, 97, 866, 998, 1025, 1106, 1157
BciT130I CCWGG 2 cut(s) 117, 1086
BciVI GTATCC 2 cut(s) 343, 886
BfaI CTAG 1 cut(s) 975
BfmI CTRYAG 4 cut(s) 824, 837, 915, 1104
BfrI CTTAAG 1 cut(s) 1037
BfuAI ACCTGC 2 cut(s) 553, 922
BfuI GTATCC 2 cut(s) 343, 886
BglII AGATCT 1 cut(s) 820
BisI GCNGC 3 cut(s) 113, 918, 1107
BlsI GCNGC 3 cut(s) 114, 919, 1108
Bme1390I CCNGG 2 cut(s) 117, 1086
Bme18I GGWCC 2 cut(s) 626, 1166
BmeRI GACNNNNNGTC 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 86, 626, 1166
BmiI GGNNCC 4 cut(s) 52, 753, 833, 1009
BmrFI CCNGG 2 cut(s) 117, 1086
BmsI GCATC 3 cut(s) 545, 998, 1119
BmtI GCTAGC 1 cut(s) 978
BoxI GACNNNNGTC 1 cut(s) 690
BpiI GAAGAC 2 cut(s) 63, 72
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 4 cut(s) 134, 399, 627, 709
Bpu14I TTCGAA 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 867
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 6 cut(s) 265, 761, 797, 873, 903, 1163
Bse1I ACTGG 6 cut(s) 151, 362, 556, 644, 692, 709
BseAI TCCGGA 1 cut(s) 992
BseBI CCWGG 2 cut(s) 117, 1086
BseDI CCNNGG 1 cut(s) 867
BseGI GGATG 4 cut(s) 494, 877, 989, 1017
BseLI CCNNNNNNNGG 6 cut(s) 265, 761, 797, 873, 903, 1163
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 6 cut(s) 151, 362, 556, 644, 692, 709
BseRI GAGGAG 2 cut(s) 443, 446
BseXI GCAGC 3 cut(s) 124, 929, 1118
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 88, 202
BshNI GGYRCC 1 cut(s) 1007
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 993
BslFI GGGAC 4 cut(s) 298, 584, 737, 1056
BslI CCNNNNNNNGG 6 cut(s) 265, 761, 797, 873, 903, 1163
BsmFI GGGAC 4 cut(s) 298, 584, 737, 1056
BsmI GAATGC 2 cut(s) 595, 1072
BsnI GGCC 2 cut(s) 88, 202
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 3 cut(s) 53, 150, 836
Bsp13I TCCGGA 1 cut(s) 992
Bsp143I GATC 3 cut(s) 443, 820, 1092
BspANI GGCC 2 cut(s) 88, 202
BspCNI CTCAG 1 cut(s) 301
BspEI TCCGGA 1 cut(s) 992
BspFNI CGCG 1 cut(s) 357
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 52, 753, 833, 1009
BspMAI CTGCAG 3 cut(s) 828, 919, 1108
BspMI ACCTGC 2 cut(s) 553, 922
BspOI GCTAGC 1 cut(s) 978
BspPI GGATC 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 1007
BspTI CTTAAG 1 cut(s) 1037
BsrI ACTGG 6 cut(s) 151, 362, 556, 644, 692, 709
BssECI CCNNGG 1 cut(s) 867
BssMI GATC 3 cut(s) 443, 820, 1092
BssNAI GTATAC 1 cut(s) 503
Bst1107I GTATAC 1 cut(s) 503
Bst2UI CCWGG 2 cut(s) 117, 1086
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 138, 183
BstAFI CTTAAG 1 cut(s) 1037
BstBAI YACGTR 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 4 cut(s) 99, 811, 972, 976
BstDEI CTNAG 5 cut(s) 24, 209, 288, 317, 1028
BstDSI CCRYGG 1 cut(s) 867
BstF5I GGATG 4 cut(s) 494, 877, 989, 1017
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 4 cut(s) 357, 452, 471, 934
BstKTI GATC 3 cut(s) 446, 823, 1095
BstMBI GATC 3 cut(s) 443, 820, 1092
BstMWI GCNNNNNNNGC 3 cut(s) 94, 299, 938
BstNI CCWGG 2 cut(s) 117, 1086
BstPAI GACNNNNGTC 1 cut(s) 690
BstSCI CCNGG 2 cut(s) 115, 1084
BstSFI CTRYAG 4 cut(s) 824, 837, 915, 1104
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 124, 929, 1118
BstV2I GAAGAC 2 cut(s) 63, 72
BstX2I RGATCY 2 cut(s) 443, 820
BstYI RGATCY 2 cut(s) 443, 820
BstZ17I GTATAC 1 cut(s) 503
BsuI GTATCC 2 cut(s) 343, 886
BsuRI GGCC 2 cut(s) 88, 202
BtgI CCRYGG 1 cut(s) 867
BtsCI GGATG 4 cut(s) 494, 877, 989, 1017
BtsI GCAGTG 1 cut(s) 833
BtsIMutI CAGTG 4 cut(s) 158, 369, 651, 833
BveI ACCTGC 2 cut(s) 553, 922
Cac8I GCNNGC 4 cut(s) 99, 811, 972, 976
CaiI CAGNNNCTG 1 cut(s) 845
CciI TCATGA 1 cut(s) 481
CfoI GCGC 4 cut(s) 357, 452, 471, 934
Cfr13I GGNCC 3 cut(s) 86, 626, 1166
Csp6I GTAC 3 cut(s) 224, 271, 1008
CviAII CATG 6 cut(s) 182, 482, 511, 557, 771, 1090
CviQI GTAC 3 cut(s) 224, 271, 1008
DdeI CTNAG 5 cut(s) 24, 209, 288, 317, 1028
DpnI GATC 3 cut(s) 445, 822, 1094
DpnII GATC 3 cut(s) 443, 820, 1092
DriI GACNNNNNGTC 1 cut(s) 519
Eam1104I CTCTTC 2 cut(s) 138, 183
Eam1105I GACNNNNNGTC 1 cut(s) 519
EarI CTCTTC 2 cut(s) 138, 183
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 3 cut(s) 53, 150, 836
Eco47I GGWCC 2 cut(s) 626, 1166
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 3 cut(s) 66, 147, 559
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 626
EcoRII CCWGG 2 cut(s) 115, 1084
EcoT38I GRGCYC 3 cut(s) 53, 150, 836
FaeI CATG 6 cut(s) 185, 485, 514, 560, 774, 1093
FaqI GGGAC 4 cut(s) 298, 584, 737, 1056
FatI CATG 6 cut(s) 181, 481, 510, 556, 770, 1089
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 3 cut(s) 113, 918, 1107
FokI GGATG 4 cut(s) 501, 884, 976, 1004
FriOI GRGCYC 3 cut(s) 53, 150, 836
Fsp4HI GCNGC 3 cut(s) 113, 918, 1107
FspBI CTAG 1 cut(s) 975
FspI TGCGCA 1 cut(s) 470
GlaI GCGC 4 cut(s) 356, 451, 470, 933
GluI GCNGC 3 cut(s) 113, 918, 1107
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 4 cut(s) 134, 399, 627, 709
HaeIII GGCC 2 cut(s) 88, 202
HapII CCGG 1 cut(s) 993
HhaI GCGC 4 cut(s) 357, 452, 471, 934
Hin1II CATG 6 cut(s) 185, 485, 514, 560, 774, 1093
Hin6I GCGC 4 cut(s) 355, 450, 469, 932
HinP1I GCGC 4 cut(s) 355, 450, 469, 932
HindIII AAGCTT 2 cut(s) 211, 300
HinfI GANTC 7 cut(s) 286, 389, 496, 602, 608, 675, 691
HpaII CCGG 1 cut(s) 993
HphI GGTGA 2 cut(s) 256, 903
Hpy166II GTNNAC 3 cut(s) 124, 271, 503
Hpy188I TCNGA 5 cut(s) 588, 607, 613, 1128, 1162
Hpy188III TCNNGA 4 cut(s) 378, 482, 683, 993
Hpy8I GTNNAC 3 cut(s) 124, 271, 503
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 9 cut(s) 463, 536, 562, 729, 809, 826, 917, 941, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 299, 938
HpyF3I CTNAG 5 cut(s) 24, 209, 288, 317, 1028
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 6 cut(s) 185, 485, 514, 560, 774, 1093
HspAI GCGC 4 cut(s) 355, 450, 469, 932
Kpn2I TCCGGA 1 cut(s) 992
KpnI GGTACC 1 cut(s) 1011
Kzo9I GATC 3 cut(s) 443, 820, 1092
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 5 cut(s) 56, 153, 433, 646, 831
Lsp1109I GCAGC 3 cut(s) 124, 929, 1118
LweI GCATC 3 cut(s) 545, 998, 1119
MaeI CTAG 1 cut(s) 975
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 6 cut(s) 155, 410, 475, 700, 909, 1022
MalI GATC 3 cut(s) 445, 822, 1094
MboI GATC 3 cut(s) 443, 820, 1092
MboII GAAGA 7 cut(s) 63, 66, 72, 155, 170, 428, 830
MflI RGATCY 2 cut(s) 443, 820
MhlI GDGCHC 3 cut(s) 53, 150, 836
MluCI AATT 3 cut(s) 128, 456, 1080
MlyI GAGTC 3 cut(s) 280, 398, 700
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 9 cut(s) 127, 240, 270, 421, 424, 534, 705, 868, 1168
MroI TCCGGA 1 cut(s) 992
MseI TTAA 5 cut(s) 15, 327, 651, 927, 1038
MslI CAYNNNNRTG 3 cut(s) 531, 588, 666
MspCI CTTAAG 1 cut(s) 1037
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 2 cut(s) 117, 1086
Mva1269I GAATGC 2 cut(s) 595, 1072
MvaI CCWGG 2 cut(s) 117, 1086
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 94, 299, 938
NdeII GATC 3 cut(s) 443, 820, 1092
NheI GCTAGC 1 cut(s) 974
NlaIII CATG 6 cut(s) 185, 485, 514, 560, 774, 1093
NlaIV GGNNCC 4 cut(s) 52, 753, 833, 1009
NmuCI GTSAC 4 cut(s) 155, 410, 909, 1022
NsbI TGCGCA 1 cut(s) 470
NspV TTCGAA 1 cut(s) 7
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 922
PciSI GCTCTTC 1 cut(s) 138
PctI GAATGC 2 cut(s) 595, 1072
PfeI GAWTC 4 cut(s) 496, 602, 608, 675
PkrI GCNGC 3 cut(s) 114, 919, 1108
PleI GAGTC 3 cut(s) 280, 397, 699
PpsI GAGTC 3 cut(s) 280, 397, 699
Ppu21I YACGTR 1 cut(s) 506
PpuMI RGGWCCY 1 cut(s) 626
PshAI GACNNNNGTC 1 cut(s) 690
PsiI TTATAA 1 cut(s) 1119
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 115, 1084
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 2 cut(s) 115, 1084
PspN4I GGNNCC 4 cut(s) 52, 753, 833, 1009
PspPI GGNCC 3 cut(s) 86, 626, 1166
PspPPI RGGWCCY 1 cut(s) 626
PstI CTGCAG 3 cut(s) 828, 919, 1108
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 2 cut(s) 443, 820
RsaI GTAC 3 cut(s) 225, 272, 1009
RsaNI GTAC 3 cut(s) 224, 271, 1008
RseI CAYNNNNRTG 3 cut(s) 531, 588, 666
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 5 cut(s) 15, 327, 651, 927, 1038
SatI GCNGC 3 cut(s) 113, 918, 1107
Sau3AI GATC 3 cut(s) 443, 820, 1092
Sau96I GGNCC 3 cut(s) 86, 626, 1166
SchI GAGTC 3 cut(s) 280, 398, 700
ScrFI CCNGG 2 cut(s) 117, 1086
SduI GDGCHC 3 cut(s) 53, 150, 836
SfaNI GCATC 3 cut(s) 545, 998, 1119
SfcI CTRYAG 4 cut(s) 824, 837, 915, 1104
SfuI TTCGAA 1 cut(s) 7
SinI GGWCC 2 cut(s) 626, 1166
SmiMI CAYNNNNRTG 3 cut(s) 531, 588, 666
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
Sse9I AATT 3 cut(s) 128, 456, 1080
SspI AATATT 1 cut(s) 1123
SspMI CTAG 1 cut(s) 975
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 115, 1084
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 508
TaqI TCGA 3 cut(s) 7, 392, 684
TasI AATT 3 cut(s) 128, 456, 1080
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 4 cut(s) 496, 602, 608, 675
Tru1I TTAA 5 cut(s) 15, 327, 651, 927, 1038
Tru9I TTAA 5 cut(s) 15, 327, 651, 927, 1038
TscAI CASTG 4 cut(s) 158, 369, 651, 833
TseFI GTSAC 4 cut(s) 155, 410, 909, 1022
TseI GCWGC 3 cut(s) 112, 917, 1106
Tsp45I GTSAC 4 cut(s) 155, 410, 909, 1022
TspDTI ATGAA 4 cut(s) 170, 498, 684, 1055
TspGWI ACGGA 3 cut(s) 780, 856, 1010
TspRI CASTG 4 cut(s) 158, 369, 651, 833
Vha464I CTTAAG 1 cut(s) 1037
VpaK11BI GGWCC 2 cut(s) 626, 1166
XapI RAATTY 1 cut(s) 1080
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.