Prupe.7G211000_v2.0.a1

Glutamate-rich WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011879
Physical Location & Seq
Forward (+)
19309405 .. 19312706
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G211000.1

Sequence Viewer

Length: 1422 bp
ATGGTCCGAAGCATCAAGAACCCTAAGAAAGCCAAGAGAAAGAACAAGGGCTCAAAGAAAGGAGATGGGTCTTCTTCCTCTGCAATACCATCGATGCCTGCGAAGGTATGGCAACCAGGAGTGGACAAGTTGGAGGAAGGCGAAGAGCTCCAGTGTGACCCATCAGCTTACAATTCTCTCCATGCCTTCCATATTGGTTGGCCTTGTTTAAGCTTTGATATTGTACGAGATACATTGGGGTTGGTTCGGACAGAGTTCCCCCATACAGTGTATTTCGTTGCCGGGACTCAGGCAGAGAAAGCTGCTTGGAACTCTCTTGGAATATTTAAAGTATCCAACATTTCTGGGAAAAAGCGCGAACCAGTGCCTGCCAAACCTGCAGATGAAGACTCTAATATGGATAGTGAGGATAGTGATAGTGACGAAGATAGCGATGATGAGGAGGCTGGTGGATCTGGCGCACCGGTTTTGCAGTTGCGCAAGGTAGCTCATGAAGGATGTGTTAATCGTATACGCGCCATGACACAAAATCCCCATATATGTGCATCGTGGGCAGATACTGGTCATGTGCAGGTTTGGGACTTCAGTTCTCATTTAAATGCTTTAGCAGAATCAGAGGCAGACGTTAGCCAGGGAGCTTCTTCAGTTTTTAACCAGGCTCCATTGGTTAAGTTTGGGCATAAAGATGAAGGGTTTGCTCTAGACTGGAGTCCACTTGTACCTGGAAGGCTTCTATCTGGGGATTGCAAGAATTATATACATTTGTGGGAACCTACATCGGGTTCCACATGGAATGTTGATACTACTCCGTATATTGGACATACTTCAAGTGTGGAGGATCTGCAATGGAGTCCTACCGAACCTGATGTATTTGCCTCTTGTTCTGTGGATGGGAACATAGCAATATGGGATATCCGTCTGGGAAAGTCACCAGCAACTTCTTTTAAGGCGCATGATGCAGATGTGAATGTTATTTCTTGGAATAGGCTGGCTAGTTGTATGCTGGCATCTGGAAGTGATGATGGTACTTTTTCCATTCGTGATCTTAGATTGCTTAAGGAAGGAGATTCTGTAGTGGCACATTTTGAATACCATAAACACCCCATCACATCCATTGAGTGGAGTCCACATGAAGCCTCCACTTTGGCAGTGTCATCTTCTGACAATCAGCTAACAATATGGGATCTATCTTTGGAAAATGACGAGGAAGAGGAGGCAGAATTCAAAGCTAAAACAAAGGAGCAAGTGAATGCTCCAAAAGATTTACCTCCACAACTTCTTTTTGTCCATCAGGGACAAAAAGACCTCAAAGAACTTCATTGGCATGCTCAGATTCCTGGCATGCTCGTTTCAACTGCAGCAGATGGTTATAATATTCTGATGCCTTCAAACATACAGACTACCCTTCCCTCTGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

474

Amino Acids

51.87

Weight (kDa)

5.0

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19540
fragaria_vesca FvH4_1g07300
malus_domestica MD02G1077800.v1.1 MD15G1206400.v1.1
prunus_persica Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1
pyrus_communis pycom02g06200
rosa_chinensis RchiOBHm_Chr2g0093231
rosa_laevigata RLG00000016380
rosa_multiflora Rmu_sc0003724.1_g000014 Rmu_sc0037462.1_g000001
rosa_roxburghii Rroxscaffold_2G00148390
rosa_rugosa Rorug02G0033700
rosa_samantha Rh2AG079900 Rh2BG080800 Rh2CG083200 Rh2DG078800
rosa_wichuraiana Rw2G006710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1371
Acc16I TGCGCA 1 cut(s) 479
Acc36I ACCTGC 2 cut(s) 385, 562
AccB7I CCANNNNNTGG 1 cut(s) 1119
AccI GTMKAC 1 cut(s) 511
AccII CGCG 2 cut(s) 357, 516
AclWI GGATC 3 cut(s) 460, 846, 1191
AcsI RAATTY 1 cut(s) 1220
AcuI CTGAAG 2 cut(s) 568, 627
AfaI GTAC 3 cut(s) 225, 720, 1027
AfiI CCNNNNNNNGG 3 cut(s) 779, 815, 1119
AflII CTTAAG 1 cut(s) 1055
AgeI ACCGGT 1 cut(s) 463
AgsI TTSAA 5 cut(s) 828, 1088, 1225, 1353, 1389
AjnI CCWGG 5 cut(s) 115, 630, 654, 721, 1336
AluBI AGCT 8 cut(s) 148, 167, 213, 302, 488, 638, 1171, 1229
AluI AGCT 8 cut(s) 148, 167, 213, 302, 488, 638, 1171, 1229
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 3 cut(s) 460, 846, 1191
AlwNI CAGNNNCTG 2 cut(s) 368, 560
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 302, 1358
ApoI RAATTY 1 cut(s) 1220
AsiGI ACCGGT 1 cut(s) 463
AspLEI GCGC 5 cut(s) 357, 461, 480, 518, 952
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 921
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 53, 150
BbsI GAAGAC 2 cut(s) 63, 393
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 289, 1370
BccI CCATC 8 cut(s) 59, 97, 169, 884, 1016, 1112, 1296, 1358
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 5 cut(s) 117, 632, 656, 723, 1338
BciVI GTATCC 1 cut(s) 343
BcnI CCSGG 1 cut(s) 283
BfaI CTAG 2 cut(s) 701, 993
BfmI CTRYAG 3 cut(s) 378, 1071, 1356
BfrI CTTAAG 1 cut(s) 1055
BfuAI ACCTGC 2 cut(s) 385, 562
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 2 cut(s) 303, 1359
BlsI GCNGC 2 cut(s) 304, 1360
Bme1390I CCNGG 6 cut(s) 117, 283, 632, 656, 723, 1338
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 660, 771, 784
BmrFI CCNGG 6 cut(s) 117, 283, 632, 656, 723, 1338
BmsI GCATC 6 cut(s) 21, 84, 554, 946, 1016, 1371
BoxI GACNNNNGTC 1 cut(s) 708
BpiI GAAGAC 2 cut(s) 63, 393
BpmI CTGGAG 2 cut(s) 134, 727
BpuMI CCSGG 1 cut(s) 283
Bsa29I ATCGAT 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 631
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bsc4I CCNNNNNNNGG 3 cut(s) 779, 815, 1119
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 4 cut(s) 151, 362, 565, 710
Bse3DI GCAATG 1 cut(s) 851
BseBI CCWGG 5 cut(s) 117, 632, 656, 723, 1338
BseCI ATCGAT 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 631
BseGI GGATG 3 cut(s) 503, 895, 1109
BseLI CCNNNNNNNGG 3 cut(s) 779, 815, 1119
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 2 cut(s) 302, 1343
BseNI ACTGG 4 cut(s) 151, 362, 565, 710
BseRI GAGGAG 2 cut(s) 455, 1226
BseXI GCAGC 2 cut(s) 289, 1370
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 357, 516
BshFI GGCC 1 cut(s) 202
BshTI ACCGGT 1 cut(s) 463
BshVI ATCGAT 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 282, 464
BslFI GGGAC 3 cut(s) 298, 593, 1308
BslI CCNNNNNNNGG 3 cut(s) 779, 815, 1119
BsmFI GGGAC 3 cut(s) 298, 593, 1308
BsmI GAATGC 1 cut(s) 1255
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 53, 150
Bsp143I GATC 4 cut(s) 452, 838, 1042, 1183
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 301, 1342
BspDI ATCGAT 1 cut(s) 92
BspFNI CGCG 2 cut(s) 357, 516
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 660, 771, 784
BspMAI CTGCAG 2 cut(s) 382, 1360
BspMI ACCTGC 2 cut(s) 385, 562
BspPI GGATC 3 cut(s) 460, 846, 1191
BspQI GCTCTTC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 1055
BsrDI GCAATG 1 cut(s) 851
BsrFI RCCGGY 1 cut(s) 463
BsrI ACTGG 4 cut(s) 151, 362, 565, 710
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 631
BssMI GATC 4 cut(s) 452, 838, 1042, 1183
BssNAI GTATAC 1 cut(s) 512
Bst1107I GTATAC 1 cut(s) 512
Bst2UI CCWGG 5 cut(s) 117, 632, 656, 723, 1338
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 138, 1203
BstAFI CTTAAG 1 cut(s) 1055
BstC8I GCNNGC 6 cut(s) 99, 369, 990, 1005, 1326, 1343
BstDEI CTNAG 4 cut(s) 24, 288, 1046, 1329
BstF5I GGATG 3 cut(s) 503, 895, 1109
BstFNI CGCG 2 cut(s) 357, 516
BstHHI GCGC 5 cut(s) 357, 461, 480, 518, 952
BstKTI GATC 4 cut(s) 455, 841, 1045, 1186
BstMBI GATC 4 cut(s) 452, 838, 1042, 1183
BstMWI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
BstNI CCWGG 5 cut(s) 117, 632, 656, 723, 1338
BstNSI RCATGY 2 cut(s) 1328, 1345
BstPAI GACNNNNGTC 1 cut(s) 708
BstSCI CCNGG 6 cut(s) 115, 281, 630, 654, 721, 1336
BstSFI CTRYAG 3 cut(s) 378, 1071, 1356
BstUI CGCG 2 cut(s) 357, 516
BstV1I GCAGC 2 cut(s) 289, 1370
BstV2I GAAGAC 2 cut(s) 63, 393
BstX2I RGATCY 3 cut(s) 452, 838, 1183
BstYI RGATCY 3 cut(s) 452, 838, 1183
BstZ17I GTATAC 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 92
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 202
BsuTUI ATCGAT 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 3 cut(s) 503, 895, 1109
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 4 cut(s) 158, 273, 369, 1155
BveI ACCTGC 2 cut(s) 385, 562
Cac8I GCNNGC 6 cut(s) 99, 369, 990, 1005, 1326, 1343
CaiI CAGNNNCTG 2 cut(s) 368, 560
CciI TCATGA 1 cut(s) 490
CfoI GCGC 5 cut(s) 357, 461, 480, 518, 952
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 224, 719, 1026
CspAI ACCGGT 1 cut(s) 463
CviAII CATG 9 cut(s) 182, 491, 520, 566, 789, 953, 1130, 1325, 1342
CviQI GTAC 3 cut(s) 224, 719, 1026
DdeI CTNAG 4 cut(s) 24, 288, 1046, 1329
DpnI GATC 4 cut(s) 454, 840, 1044, 1185
DpnII GATC 4 cut(s) 452, 838, 1042, 1183
DraI TTTAAA 2 cut(s) 328, 597
Eam1104I CTCTTC 2 cut(s) 138, 1203
EarI CTCTTC 2 cut(s) 138, 1203
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 53, 150
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 568, 627
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 1220
EcoRII CCWGG 5 cut(s) 115, 630, 654, 721, 1336
EcoRV GATATC 1 cut(s) 913
EcoT38I GRGCYC 2 cut(s) 53, 150
FaeI CATG 9 cut(s) 185, 494, 523, 569, 792, 956, 1133, 1328, 1345
FaqI GGGAC 3 cut(s) 298, 593, 1308
FatI CATG 9 cut(s) 181, 490, 519, 565, 788, 952, 1129, 1324, 1341
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 303, 1359
FokI GGATG 3 cut(s) 510, 902, 1096
FriOI GRGCYC 2 cut(s) 53, 150
Fsp4HI GCNGC 2 cut(s) 303, 1359
FspBI CTAG 2 cut(s) 701, 993
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 5 cut(s) 356, 460, 479, 517, 951
GluI GCNGC 2 cut(s) 303, 1359
GsuI CTGGAG 2 cut(s) 134, 727
HaeIII GGCC 1 cut(s) 202
HapII CCGG 2 cut(s) 282, 464
HhaI GCGC 5 cut(s) 357, 461, 480, 518, 952
Hin1II CATG 9 cut(s) 185, 494, 523, 569, 792, 956, 1133, 1328, 1345
Hin6I GCGC 5 cut(s) 355, 459, 478, 516, 950
HinP1I GCGC 5 cut(s) 355, 459, 478, 516, 950
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 8 cut(s) 286, 389, 611, 709, 850, 1067, 1123, 1333
HpaII CCGG 2 cut(s) 282, 464
HphI GGTGA 1 cut(s) 921
Hpy166II GTNNAC 4 cut(s) 124, 512, 713, 1127
Hpy188I TCNGA 8 cut(s) 8, 249, 616, 1162, 1332, 1380, 1414, 1421
Hpy188III TCNNGA 5 cut(s) 16, 491, 701, 1011, 1040
Hpy8I GTNNAC 4 cut(s) 124, 512, 713, 1127
HpyAV CCTTC 9 cut(s) 97, 131, 196, 488, 683, 720, 1055, 1395, 1415
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 9 cut(s) 83, 380, 472, 545, 571, 747, 844, 959, 1358
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
HpyF3I CTNAG 4 cut(s) 24, 288, 1046, 1329
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 9 cut(s) 185, 494, 523, 569, 792, 956, 1133, 1328, 1345
HspAI GCGC 5 cut(s) 355, 459, 478, 516, 950
Kzo9I GATC 4 cut(s) 452, 838, 1042, 1183
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 5 cut(s) 153, 635, 664, 1240, 1258
Lsp1109I GCAGC 2 cut(s) 289, 1370
LweI GCATC 6 cut(s) 21, 84, 554, 946, 1016, 1371
MaeI CTAG 2 cut(s) 701, 993
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 3 cut(s) 155, 419, 927
MalI GATC 4 cut(s) 454, 840, 1044, 1185
MboI GATC 4 cut(s) 452, 838, 1042, 1183
MboII GAAGA 8 cut(s) 63, 66, 155, 398, 437, 633, 1149, 1220
MflI RGATCY 3 cut(s) 452, 838, 1183
MhlI GDGCHC 2 cut(s) 53, 150
MluCI AATT 3 cut(s) 172, 751, 1220
MlyI GAGTC 5 cut(s) 280, 383, 718, 859, 1132
MmeI TCCRAC 2 cut(s) 111, 360
MseI TTAA 8 cut(s) 209, 327, 504, 596, 651, 669, 945, 1056
MslI CAYNNNNRTG 4 cut(s) 540, 597, 684, 1323
MspCI CTTAAG 1 cut(s) 1055
MspI CCGG 2 cut(s) 282, 464
MspR9I CCNGG 6 cut(s) 117, 283, 632, 656, 723, 1338
Mva1269I GAATGC 1 cut(s) 1255
MvaI CCWGG 5 cut(s) 117, 632, 656, 723, 1338
MvnI CGCG 2 cut(s) 357, 516
MwoI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
NciI CCSGG 1 cut(s) 283
NdeII GATC 4 cut(s) 452, 838, 1042, 1183
NlaIII CATG 9 cut(s) 185, 494, 523, 569, 792, 956, 1133, 1328, 1345
NlaIV GGNNCC 3 cut(s) 660, 771, 784
NmuCI GTSAC 3 cut(s) 155, 419, 927
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 2 cut(s) 1328, 1345
PaeI GCATGC 2 cut(s) 1328, 1345
PagI TCATGA 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 429
PctI GAATGC 1 cut(s) 1255
PfeI GAWTC 3 cut(s) 611, 1067, 1333
PflMI CCANNNNNTGG 1 cut(s) 1119
PinAI ACCGGT 1 cut(s) 463
PkrI GCNGC 2 cut(s) 304, 1360
PleI GAGTC 5 cut(s) 280, 383, 717, 858, 1131
PpsI GAGTC 5 cut(s) 280, 383, 717, 858, 1131
PshAI GACNNNNGTC 1 cut(s) 708
PsiI TTATAA 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 5 cut(s) 115, 630, 654, 721, 1336
PspGI CCWGG 5 cut(s) 115, 630, 654, 721, 1336
PspN4I GGNNCC 3 cut(s) 660, 771, 784
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 2 cut(s) 382, 1360
PstNI CAGNNNCTG 2 cut(s) 368, 560
PsuI RGATCY 3 cut(s) 452, 838, 1183
RsaI GTAC 3 cut(s) 225, 720, 1027
RsaNI GTAC 3 cut(s) 224, 719, 1026
RseI CAYNNNNRTG 4 cut(s) 540, 597, 684, 1323
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 8 cut(s) 209, 327, 504, 596, 651, 669, 945, 1056
SatI GCNGC 2 cut(s) 303, 1359
Sau3AI GATC 4 cut(s) 452, 838, 1042, 1183
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 5 cut(s) 280, 383, 718, 859, 1132
ScrFI CCNGG 6 cut(s) 117, 283, 632, 656, 723, 1338
SduI GDGCHC 2 cut(s) 53, 150
SfaNI GCATC 6 cut(s) 21, 84, 554, 946, 1016, 1371
SfcI CTRYAG 3 cut(s) 378, 1071, 1356
SinI GGWCC 1 cut(s) 4
SmiI ATTTAAAT 1 cut(s) 597
SmiMI CAYNNNNRTG 4 cut(s) 540, 597, 684, 1323
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SphI GCATGC 2 cut(s) 1328, 1345
Sse9I AATT 3 cut(s) 172, 751, 1220
SspI AATATT 2 cut(s) 324, 1375
SspMI CTAG 2 cut(s) 701, 993
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 6 cut(s) 115, 281, 630, 654, 721, 1336
SwaI ATTTAAAT 1 cut(s) 597
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 627
TaqI TCGA 1 cut(s) 92
TasI AATT 3 cut(s) 172, 751, 1220
TfiI GAWTC 3 cut(s) 611, 1067, 1333
Tru1I TTAA 8 cut(s) 209, 327, 504, 596, 651, 669, 945, 1056
Tru9I TTAA 8 cut(s) 209, 327, 504, 596, 651, 669, 945, 1056
TscAI CASTG 4 cut(s) 158, 273, 369, 1155
TseFI GTSAC 3 cut(s) 155, 419, 927
TseI GCWGC 2 cut(s) 302, 1358
Tsp45I GTSAC 3 cut(s) 155, 419, 927
TspDTI ATGAA 5 cut(s) 399, 507, 702, 1146, 1307
TspGWI ACGGA 2 cut(s) 798, 905
TspRI CASTG 4 cut(s) 158, 273, 369, 1155
Van91I CCANNNNNTGG 1 cut(s) 1119
Vha464I CTTAAG 1 cut(s) 1055
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 1220
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 2 cut(s) 1328, 1345
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 2 cut(s) 701, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.