MD15G1206400.v1.1

Glutamate-rich WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011879
Physical Location & Seq
Reverse (-)
16390105 .. 16393255
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1206400.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGGTCAGAAGCATCAAGAACCCTAAGAAAGCCAAAAGAAAGGCCAAGGGCTCAAAGAAAGGAGATGGGTCTTCTTCCTCTTCGGGACCGTCGATGCCGGCGAAGGTATGGCAACCGGGAGTGGACAAGTTGGAGGAGGGCGAAGAGCTCCAGTGTGACCCATCAGCTTACAATTCTCTCCATGCCTTCCATATTGGTTGGCCTTGTTTAAGCTTTGATATTGTACGGGATACGTTGGGGTTGGTTCGGACAGAGTTCCCCCATAGTGTGTATTTCGTTGCTGGGACTCAGGCAGAGAAAGCTGCTTGGAACTCTCTTGGAATATTTAAAGTATCTAACATTTCTGGGAAAAAGCGCGAGCCAGTGCCAGCCAAAGCTGCAGATGATGACTCTAATATGGATAGTGAGGACAGTGATAGTGACGATGATAGCGAGGATGAGGAGTCAAGTGGATCTGGCGCACCTGTTTTGCAGTTGCGCAAGGTAGCTCATGAAGGATGTGTGAATCGTATACGCGCCATGACACAAAATCCACATATATTTGCATCTTGGGCAGACACTGGTCATGTGCAGGTTTGGGACTTCAGTTCTCATTTAAATGCCTTAGCCGAGTCAGAGACCGAAGCTAGCCAGGGAGCTTCTTCAGTATTTAACCAGGCTCCATTGGTTAAATTTGGGCATAAGGATGAAGGGTTTGCTCTAGACTGGAGTCCCCTTGTACCTGGAAGGCTTCTATCTGGGGACTGCAAGAATTGTATACATTTGTGGGAACCTACATCTGGTTCAACATGGAATGTTGATACTACCCCATATATTGGACATATTGCAAGTGTGGAGGATTTACAATGGAGTCCTACGGAACCTGATGTCTTTGCCTCTTGTTCTGTCGATGGGAATATAGCAATATGGGATATACGCATGGGGAAGGCACCAGCAACTTCTTTTAAGGCGCATAATGCTGATGTGAATGTTATGTCTTGGAATAGGCTGGCTAGTTGTATGCTGGCATCTGGAAGTGATGATGGCACCTTTTCCATTCGTGATCTTAGATTGCTGAAGGAAGGAGATTCTGTAGTGGCACATTTTGAATACCATAAACACCCTATCACCTCCATCGAGTGGAGTCCACATGAAGCATCCACTTTGGCTGTGACATCTTCTGACAATCAGCTGACAATATGGGATCTTTCTTTAGAAAATGATGAGGAGGAAGAGGCAGAATTCAAAGCGAAGACAAAAGAGGAAGTGAATGCTCCAAAAGATTTACCTCCACAGCTTTTATTTGTTCATCAGGGACAAAAGGACTTGAAAGAACTTCATTGGCACACACAGATTCCTGGCATGCTCGTTTCAACTGCGGCAGATGGTTATAATATTCTGATGCCTTCAAACATACAGACTACCCTTCCCTCTGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

474

Amino Acids

51.84

Weight (kDa)

5.01

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1C_H4-bd PF12265 48 - 114 8.2e-13 Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_WDR5 PF25175 163 - 309 8.9e-06 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 164 - 345 5.6e-07 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 168 - 309 4.8e-07 CDC20/Fizzy WD40 domain
Beta-prop_Aladin PF25460 219 - 339 4.4e-07 Aladin seven-bladed propeller
Beta-prop_THOC3 PF25174 227 - 328 2.6e-14 THOC3 beta-propeller domain
Beta-prop_EIPR1 PF23609 249 - 344 2.7e-08 EIPR1 beta-propeller
WD40_CDC20-Fz PF24807 250 - 413 3.6e-19 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 251 - 399 7.7e-17 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 255 - 395 1.4e-08 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 271 - 350 5.8e-07 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 272 - 397 2.6e-07 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 273 - 397 7.3e-17 WDR5 beta-propeller domain
WDR55 PF24796 274 - 399 2.2e-09 WDR55
Beta-prop_EML_2 PF23414 283 - 398 3e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 295 - 399 9.3e-08 WDR36/Utp21 first beta-propeller
Beta-prop_THOC3 PF25174 318 - 398 1.1e-09 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19540
fragaria_vesca FvH4_1g07300
malus_domestica MD02G1077800.v1.1 MD15G1206400.v1.1
prunus_persica Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1
pyrus_communis pycom02g06200
rosa_chinensis RchiOBHm_Chr2g0093231
rosa_laevigata RLG00000016380
rosa_multiflora Rmu_sc0003724.1_g000014 Rmu_sc0037462.1_g000001
rosa_roxburghii Rroxscaffold_2G00148390
rosa_rugosa Rorug02G0033700
rosa_samantha Rh2AG079900 Rh2BG080800 Rh2CG083200 Rh2DG078800
rosa_wichuraiana Rw2G006710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1371
Acc16I TGCGCA 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 562
AccB1I GGYRCC 2 cut(s) 928, 1025
AccB7I CCANNNNNTGG 2 cut(s) 815, 1119
AccI GTMKAC 2 cut(s) 511, 757
AccII CGCG 2 cut(s) 357, 516
AciI CCGC 1 cut(s) 1358
AclWI GGATC 2 cut(s) 460, 1191
AcsI RAATTY 2 cut(s) 671, 1220
AcuI CTGAAG 3 cut(s) 568, 627, 1076
AfaI GTAC 2 cut(s) 225, 720
AfiI CCNNNNNNNGG 3 cut(s) 779, 815, 1119
AgsI TTSAA 6 cut(s) 786, 1088, 1225, 1309, 1353, 1389
AjnI CCWGG 4 cut(s) 630, 654, 721, 1336
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 2 cut(s) 460, 1191
AlwNI CAGNNNCTG 1 cut(s) 560
AoxI GGCC 2 cut(s) 42, 200
ApeKI GCWGC 2 cut(s) 302, 377
ApoI RAATTY 2 cut(s) 671, 1220
AspLEI GCGC 5 cut(s) 357, 461, 480, 518, 952
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 1099
AsuNHI GCTAGC 1 cut(s) 626
AvaII GGWCC 1 cut(s) 86
BanI GGYRCC 2 cut(s) 928, 1025
BanII GRGCYC 2 cut(s) 53, 150
BbsI GAAGAC 2 cut(s) 63, 1238
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 289, 364
BccI CCATC 6 cut(s) 59, 169, 884, 1016, 1121, 1358
BciT130I CCWGG 4 cut(s) 632, 656, 723, 1338
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 3 cut(s) 627, 701, 993
BfmI CTRYAG 2 cut(s) 378, 1071
BfuAI ACCTGC 1 cut(s) 562
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 3 cut(s) 303, 378, 1359
BlsI GCNGC 3 cut(s) 304, 379, 1360
Bme1390I CCNGG 5 cut(s) 117, 632, 656, 723, 1338
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 6 cut(s) 87, 660, 771, 861, 930, 1027
BmrFI CCNGG 5 cut(s) 117, 632, 656, 723, 1338
BmsI GCATC 6 cut(s) 21, 84, 554, 1016, 1145, 1371
BmtI GCTAGC 1 cut(s) 630
BoxI GACNNNNGTC 2 cut(s) 561, 708
BpiI GAAGAC 2 cut(s) 63, 1238
BpmI CTGGAG 2 cut(s) 134, 727
Bpu10I CCTNAGC 1 cut(s) 604
BpuMI CCSGG 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 45, 631
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bsc4I CCNNNNNNNGG 3 cut(s) 779, 815, 1119
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 4 cut(s) 151, 362, 565, 710
BseBI CCWGG 4 cut(s) 632, 656, 723, 1338
BseDI CCNNGG 2 cut(s) 45, 631
BseGI GGATG 4 cut(s) 442, 503, 691, 1136
BseLI CCNNNNNNNGG 3 cut(s) 779, 815, 1119
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 4 cut(s) 151, 362, 565, 710
BseRI GAGGAG 3 cut(s) 149, 455, 1220
BseXI GCAGC 2 cut(s) 289, 364
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 357, 516
BshFI GGCC 2 cut(s) 44, 202
BshNI GGYRCC 2 cut(s) 928, 1025
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 98, 116
BslFI GGGAC 6 cut(s) 99, 298, 593, 696, 755, 1308
BslI CCNNNNNNNGG 3 cut(s) 779, 815, 1119
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 6 cut(s) 99, 298, 593, 696, 755, 1308
BsmI GAATGC 1 cut(s) 1255
BsnI GGCC 2 cut(s) 44, 202
Bso31I GGTCTC 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 53, 150
Bsp143I GATC 3 cut(s) 452, 1042, 1183
BspACI CCGC 1 cut(s) 1358
BspANI GGCC 2 cut(s) 44, 202
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 2 cut(s) 357, 516
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 6 cut(s) 87, 660, 771, 861, 930, 1027
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 630
BspPI GGATC 2 cut(s) 460, 1191
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 2 cut(s) 928, 1025
BspTNI GGTCTC 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 4 cut(s) 151, 362, 565, 710
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 45, 631
BssMI GATC 3 cut(s) 452, 1042, 1183
BssNAI GTATAC 2 cut(s) 512, 758
BssT1I CCWWGG 1 cut(s) 45
Bst1107I GTATAC 2 cut(s) 512, 758
Bst2UI CCWGG 4 cut(s) 632, 656, 723, 1338
Bst4CI ACNGT 2 cut(s) 90, 413
Bst6I CTCTTC 3 cut(s) 85, 138, 1206
BstC8I GCNNGC 7 cut(s) 99, 359, 369, 628, 990, 1005, 1343
BstDEI CTNAG 4 cut(s) 24, 288, 604, 1046
BstF5I GGATG 4 cut(s) 442, 503, 691, 1136
BstFNI CGCG 2 cut(s) 357, 516
BstHHI GCGC 5 cut(s) 357, 461, 480, 518, 952
BstKTI GATC 3 cut(s) 455, 1045, 1186
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 3 cut(s) 452, 1042, 1183
BstMWI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
BstNI CCWGG 4 cut(s) 632, 656, 723, 1338
BstNSI RCATGY 1 cut(s) 1345
BstPAI GACNNNNGTC 2 cut(s) 561, 708
BstSCI CCNGG 5 cut(s) 115, 630, 654, 721, 1336
BstSFI CTRYAG 2 cut(s) 378, 1071
BstUI CGCG 2 cut(s) 357, 516
BstV1I GCAGC 2 cut(s) 289, 364
BstV2I GAAGAC 2 cut(s) 63, 1238
BstX2I RGATCY 2 cut(s) 452, 1183
BstYI RGATCY 2 cut(s) 452, 1183
BstZ17I GTATAC 2 cut(s) 512, 758
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 44, 202
BtsCI GGATG 4 cut(s) 442, 503, 691, 1136
BtsIMutI CAGTG 4 cut(s) 158, 369, 418, 558
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 7 cut(s) 99, 359, 369, 628, 990, 1005, 1343
CaiI CAGNNNCTG 1 cut(s) 560
CciI TCATGA 1 cut(s) 490
CfoI GCGC 5 cut(s) 357, 461, 480, 518, 952
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 224, 719
CviAII CATG 8 cut(s) 182, 491, 520, 566, 789, 919, 1130, 1342
CviQI GTAC 2 cut(s) 224, 719
DdeI CTNAG 4 cut(s) 24, 288, 604, 1046
DpnI GATC 3 cut(s) 454, 1044, 1185
DpnII GATC 3 cut(s) 452, 1042, 1183
DraI TTTAAA 2 cut(s) 328, 597
Eam1104I CTCTTC 3 cut(s) 85, 138, 1206
EarI CTCTTC 3 cut(s) 85, 138, 1206
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 53, 150
Eco31I GGTCTC 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 3 cut(s) 568, 627, 1076
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 1220
EcoRII CCWGG 4 cut(s) 630, 654, 721, 1336
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 53, 150
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 8 cut(s) 185, 494, 523, 569, 792, 922, 1133, 1345
FaqI GGGAC 6 cut(s) 99, 298, 593, 696, 755, 1308
FatI CATG 8 cut(s) 181, 490, 519, 565, 788, 918, 1129, 1341
FblI GTMKAC 2 cut(s) 511, 757
Fnu4HI GCNGC 3 cut(s) 303, 378, 1359
FokI GGATG 4 cut(s) 449, 510, 698, 1123
FriOI GRGCYC 2 cut(s) 53, 150
Fsp4HI GCNGC 3 cut(s) 303, 378, 1359
FspBI CTAG 3 cut(s) 627, 701, 993
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 5 cut(s) 356, 460, 479, 517, 951
GluI GCNGC 3 cut(s) 303, 378, 1359
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 2 cut(s) 134, 727
HaeIII GGCC 2 cut(s) 44, 202
HapII CCGG 2 cut(s) 98, 116
HhaI GCGC 5 cut(s) 357, 461, 480, 518, 952
Hin1II CATG 8 cut(s) 185, 494, 523, 569, 792, 922, 1133, 1345
Hin6I GCGC 5 cut(s) 355, 459, 478, 516, 950
HinP1I GCGC 5 cut(s) 355, 459, 478, 516, 950
HindIII AAGCTT 1 cut(s) 211
HpaII CCGG 2 cut(s) 98, 116
HphI GGTGA 1 cut(s) 1099
Hpy166II GTNNAC 4 cut(s) 124, 512, 758, 1127
Hpy188I TCNGA 7 cut(s) 8, 249, 616, 1162, 1380, 1414, 1421
Hpy188III TCNNGA 6 cut(s) 16, 84, 491, 701, 1011, 1040
Hpy8I GTNNAC 4 cut(s) 124, 512, 758, 1127
Hpy99I CGWCG 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 90, 413
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 6 cut(s) 380, 472, 545, 571, 747, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
HpyF3I CTNAG 4 cut(s) 24, 288, 604, 1046
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 8 cut(s) 185, 494, 523, 569, 792, 922, 1133, 1345
HspAI GCGC 5 cut(s) 355, 459, 478, 516, 950
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 452, 1042, 1183
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 4 cut(s) 153, 635, 664, 1258
Lsp1109I GCAGC 2 cut(s) 289, 364
LweI GCATC 6 cut(s) 21, 84, 554, 1016, 1145, 1371
MaeI CTAG 3 cut(s) 627, 701, 993
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 3 cut(s) 155, 419, 1150
MalI GATC 3 cut(s) 454, 1044, 1185
MboI GATC 3 cut(s) 452, 1042, 1183
MboII GAAGA 8 cut(s) 63, 66, 72, 155, 633, 1149, 1223, 1243
MflI RGATCY 2 cut(s) 452, 1183
MhlI GDGCHC 2 cut(s) 53, 150
MluCI AATT 4 cut(s) 172, 671, 751, 1220
MlyI GAGTC 7 cut(s) 280, 383, 452, 620, 718, 859, 1132
MmeI TCCRAC 1 cut(s) 111
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 6 cut(s) 209, 327, 596, 651, 669, 945
MslI CAYNNNNRTG 2 cut(s) 597, 684
MspA1I CMGCKG 1 cut(s) 1171
MspI CCGG 2 cut(s) 98, 116
MspR9I CCNGG 5 cut(s) 117, 632, 656, 723, 1338
Mva1269I GAATGC 1 cut(s) 1255
MvaI CCWGG 4 cut(s) 632, 656, 723, 1338
MvnI CGCG 2 cut(s) 357, 516
MwoI GCNNNNNNNGC 4 cut(s) 299, 377, 551, 956
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 117
NdeII GATC 3 cut(s) 452, 1042, 1183
NgoMIV GCCGGC 1 cut(s) 97
NheI GCTAGC 1 cut(s) 626
NlaIII CATG 8 cut(s) 185, 494, 523, 569, 792, 922, 1133, 1345
NlaIV GGNNCC 6 cut(s) 87, 660, 771, 861, 930, 1027
NmeAIII GCCGAG 1 cut(s) 634
NmuCI GTSAC 3 cut(s) 155, 419, 1150
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 1 cut(s) 1345
PaeI GCATGC 1 cut(s) 1345
PagI TCATGA 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 3 cut(s) 89, 98, 429
PctI GAATGC 1 cut(s) 1255
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 505, 1067, 1333
PflMI CCANNNNNTGG 2 cut(s) 815, 1119
PkrI GCNGC 3 cut(s) 304, 379, 1360
PleI GAGTC 7 cut(s) 280, 383, 451, 619, 717, 858, 1131
PpsI GAGTC 7 cut(s) 280, 383, 451, 619, 717, 858, 1131
PshAI GACNNNNGTC 2 cut(s) 561, 708
PsiI TTATAA 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 4 cut(s) 630, 654, 721, 1336
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 4 cut(s) 630, 654, 721, 1336
PspN4I GGNNCC 6 cut(s) 87, 660, 771, 861, 930, 1027
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 2 cut(s) 452, 1183
PvuII CAGCTG 1 cut(s) 1171
RsaI GTAC 2 cut(s) 225, 720
RsaNI GTAC 2 cut(s) 224, 719
RseI CAYNNNNRTG 2 cut(s) 597, 684
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 6 cut(s) 209, 327, 596, 651, 669, 945
SatI GCNGC 3 cut(s) 303, 378, 1359
Sau3AI GATC 3 cut(s) 452, 1042, 1183
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 7 cut(s) 280, 383, 452, 620, 718, 859, 1132
ScrFI CCNGG 5 cut(s) 117, 632, 656, 723, 1338
SduI GDGCHC 2 cut(s) 53, 150
SfaNI GCATC 6 cut(s) 21, 84, 554, 1016, 1145, 1371
SfcI CTRYAG 2 cut(s) 378, 1071
SinI GGWCC 1 cut(s) 86
SmiI ATTTAAAT 1 cut(s) 597
SmiMI CAYNNNNRTG 2 cut(s) 597, 684
SphI GCATGC 1 cut(s) 1345
Sse9I AATT 4 cut(s) 172, 671, 751, 1220
SsiI CCGC 1 cut(s) 1358
SspI AATATT 2 cut(s) 324, 1375
SspMI CTAG 3 cut(s) 627, 701, 993
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 5 cut(s) 115, 630, 654, 721, 1336
StyI CCWWGG 1 cut(s) 45
SwaI ATTTAAAT 1 cut(s) 597
TaaI ACNGT 2 cut(s) 90, 413
TaiI ACGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 92, 888, 1116
TaqII GACCGA 1 cut(s) 635
TasI AATT 4 cut(s) 172, 671, 751, 1220
TauI GCSGC 1 cut(s) 1361
TfiI GAWTC 3 cut(s) 505, 1067, 1333
Tru1I TTAA 6 cut(s) 209, 327, 596, 651, 669, 945
Tru9I TTAA 6 cut(s) 209, 327, 596, 651, 669, 945
TscAI CASTG 4 cut(s) 158, 369, 418, 565
TseFI GTSAC 3 cut(s) 155, 419, 1150
TseI GCWGC 2 cut(s) 302, 377
Tsp45I GTSAC 3 cut(s) 155, 419, 1150
TspDTI ATGAA 5 cut(s) 507, 702, 1146, 1277, 1307
TspGWI ACGGA 1 cut(s) 872
TspRI CASTG 4 cut(s) 158, 369, 418, 565
Van91I CCANNNNNTGG 2 cut(s) 815, 1119
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 2 cut(s) 671, 1220
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 1345
XmiI GTMKAC 2 cut(s) 511, 757
XspI CTAG 3 cut(s) 627, 701, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.