Rmu_sc0003724.1_g000014

Glutamate-rich WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003724.1
OG0011879
Physical Location & Seq
Reverse (-)
67377 .. 69653
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003724.1_g000014.1.cds

Sequence Viewer

Length: 1050 bp
atggttcgaagcattaagaaccctaagaaagccaaaagaaagaacaagggctccaagaagggagatgggtcttcttcgtcttcagggccatcaatgccagcgaaggtgtggcagccaggtgtggacaaattggaggaaggagaagagctccagtgtgacccttcagcttacaactctcttcatgccttccatattggttggccttgtctcagctttgatattgtacgagatacattggggttggtgaggacagagttccctcatacggtgtactttgttgctgggactcaggcagagaaagcttcttggaactctcttagcatatttaaggtatccaacatttctgggaaaaagcgcgaaccagtgccaactaaatctggagatgatgagtcgaatatggatagtgaggatagtgatagtgatgaagatagtgatgaggaggagcttgaaggatctggcgcaccaattttgcagttgcgcaaggtaactcatgaaggatgtgtgaatcgtatacgtgccatgacacaaagtcctcatatatgtgcatcttggggagatactggtcatgtgcaggtctgggacttcagttctcatctgaatgctttagcagaatcagaatcagaagttagtcaaggaccttctaaccaagctccattgtttaagtttgggcataaagatgaaggattcgctctcgactggagtcctcttgtaactggaaggcttctatctggggactgcaagagtaatatacatttgtgggaacctacatctggtggaacatggaatgttgataccactccgtatattgggcatattgcaagcgtggaagatctgcagtggagccctacagaagctgatgtttttgcctcttgttccgtggatggtaatatagcaatatgggatacccgtttagggaagtcacctgcagcttcttttaaggcgcataatgcagatgtgaatgttatttcttggaacaggtgcttaaaccttaattctctatttatttattttgtgggttatttggctttggtagtgcttcctatggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAF1C_H4-bd WD40

Protein Analysis

349

Amino Acids

38.19

Weight (kDa)

5.23

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19540
fragaria_vesca FvH4_1g07300
malus_domestica MD02G1077800.v1.1 MD15G1206400.v1.1
prunus_persica Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1 Prupe.7G211000_v2.0.a1
pyrus_communis pycom02g06200
rosa_chinensis RchiOBHm_Chr2g0093231
rosa_laevigata RLG00000016380
rosa_multiflora Rmu_sc0003724.1_g000014 Rmu_sc0037462.1_g000001
rosa_roxburghii Rroxscaffold_2G00148390
rosa_rugosa Rorug02G0033700
rosa_samantha Rh2AG079900 Rh2BG080800 Rh2CG083200 Rh2DG078800
rosa_wichuraiana Rw2G006710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 931
Acc16I TGCGCA 1 cut(s) 479
Acc36I ACCTGC 2 cut(s) 562, 931
AccI GTMKAC 1 cut(s) 511
AccII CGCG 1 cut(s) 357
AclWI GGATC 1 cut(s) 460
AcuI CTGAAG 3 cut(s) 66, 147, 568
AfaI GTAC 2 cut(s) 225, 272
AfiI CCNNNNNNNGG 4 cut(s) 265, 770, 806, 912
AgsI TTSAA 1 cut(s) 449
AhdI GACNNNNNGTC 1 cut(s) 528
AjnI CCWGG 1 cut(s) 115
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 8 cut(s) 148, 167, 213, 302, 445, 650, 854, 929
AluI AGCT 8 cut(s) 148, 167, 213, 302, 445, 650, 854, 929
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 460
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 2 cut(s) 86, 200
ApeKI GCWGC 2 cut(s) 112, 926
AspLEI GCGC 4 cut(s) 357, 461, 480, 943
AspS9I GGNCC 2 cut(s) 86, 635
AsuHPI GGTGA 2 cut(s) 256, 912
AsuII TTCGAA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 635
BanII GRGCYC 3 cut(s) 53, 150, 845
BbsI GAAGAC 2 cut(s) 63, 72
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 124, 938
BccI CCATC 3 cut(s) 59, 97, 875
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 2 cut(s) 343, 895
BcoDI GTCTC 1 cut(s) 212
BfmI CTRYAG 3 cut(s) 833, 846, 924
BfuAI ACCTGC 2 cut(s) 562, 931
BfuI GTATCC 2 cut(s) 343, 895
BglII AGATCT 1 cut(s) 829
BisI GCNGC 2 cut(s) 113, 927
BlsI GCNGC 2 cut(s) 114, 928
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 635
BmeRI GACNNNNNGTC 1 cut(s) 528
BmgT120I GGNCC 2 cut(s) 86, 635
BmiI GGNNCC 3 cut(s) 52, 762, 842
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 554
BoxI GACNNNNGTC 1 cut(s) 699
BpiI GAAGAC 2 cut(s) 63, 72
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 3 cut(s) 134, 399, 718
Bpu14I TTCGAA 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 876
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 770, 806, 912
Bse1I ACTGG 5 cut(s) 151, 362, 565, 701, 718
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 2 cut(s) 503, 886
BseLI CCNNNNNNNGG 4 cut(s) 265, 770, 806, 912
BseMII CTCAG 2 cut(s) 223, 302
BseNI ACTGG 5 cut(s) 151, 362, 565, 701, 718
BseRI GAGGAG 2 cut(s) 452, 455
BseXI GCAGC 2 cut(s) 124, 938
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 88, 202
BsiHKAI GWGCWC 1 cut(s) 150
BslFI GGGAC 3 cut(s) 298, 593, 746
BslI CCNNNNNNNGG 4 cut(s) 265, 770, 806, 912
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 3 cut(s) 298, 593, 746
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 2 cut(s) 88, 202
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 3 cut(s) 53, 150, 845
Bsp143I GATC 2 cut(s) 452, 829
BspANI GGCC 2 cut(s) 88, 202
BspCNI CTCAG 2 cut(s) 222, 301
BspFNI CGCG 1 cut(s) 357
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 52, 762, 842
BspMAI CTGCAG 2 cut(s) 837, 928
BspMI ACCTGC 2 cut(s) 562, 931
BspPI GGATC 1 cut(s) 460
BspQI GCTCTTC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 7
BsrI ACTGG 5 cut(s) 151, 362, 565, 701, 718
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 2 cut(s) 452, 829
BssNAI GTATAC 1 cut(s) 512
Bst1107I GTATAC 1 cut(s) 512
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 138, 183
BstBAI YACGTR 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 2 cut(s) 99, 820
BstDEI CTNAG 4 cut(s) 24, 209, 288, 317
BstDSI CCRYGG 1 cut(s) 876
BstF5I GGATG 2 cut(s) 503, 886
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 4 cut(s) 357, 461, 480, 943
BstKTI GATC 2 cut(s) 455, 832
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 452, 829
BstMWI GCNNNNNNNGC 3 cut(s) 94, 299, 947
BstNI CCWGG 1 cut(s) 117
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 3 cut(s) 833, 846, 924
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 124, 938
BstV2I GAAGAC 2 cut(s) 63, 72
BstX2I RGATCY 2 cut(s) 452, 829
BstYI RGATCY 2 cut(s) 452, 829
BstZ17I GTATAC 1 cut(s) 512
BsuI GTATCC 2 cut(s) 343, 895
BsuRI GGCC 2 cut(s) 88, 202
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 2 cut(s) 503, 886
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 3 cut(s) 158, 369, 842
BveI ACCTGC 2 cut(s) 562, 931
Cac8I GCNNGC 2 cut(s) 99, 820
CaiI CAGNNNCTG 1 cut(s) 854
CciI TCATGA 1 cut(s) 490
CfoI GCGC 4 cut(s) 357, 461, 480, 943
Cfr13I GGNCC 2 cut(s) 86, 635
Csp6I GTAC 2 cut(s) 224, 271
CviAII CATG 5 cut(s) 182, 491, 520, 566, 780
CviQI GTAC 2 cut(s) 224, 271
DdeI CTNAG 4 cut(s) 24, 209, 288, 317
DpnI GATC 2 cut(s) 454, 831
DpnII GATC 2 cut(s) 452, 829
DriI GACNNNNNGTC 1 cut(s) 528
Eam1104I CTCTTC 2 cut(s) 138, 183
Eam1105I GACNNNNNGTC 1 cut(s) 528
EarI CTCTTC 2 cut(s) 138, 183
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 3 cut(s) 53, 150, 845
Eco47I GGWCC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 3 cut(s) 66, 147, 568
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 115
EcoT38I GRGCYC 3 cut(s) 53, 150, 845
FaeI CATG 5 cut(s) 185, 494, 523, 569, 783
FaqI GGGAC 3 cut(s) 298, 593, 746
FatI CATG 5 cut(s) 181, 490, 519, 565, 779
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 113, 927
FokI GGATG 2 cut(s) 510, 893
FriOI GRGCYC 3 cut(s) 53, 150, 845
Fsp4HI GCNGC 2 cut(s) 113, 927
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 4 cut(s) 356, 460, 479, 942
GluI GCNGC 2 cut(s) 113, 927
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 3 cut(s) 134, 399, 718
HaeIII GGCC 2 cut(s) 88, 202
HhaI GCGC 4 cut(s) 357, 461, 480, 943
Hin1II CATG 5 cut(s) 185, 494, 523, 569, 783
Hin6I GCGC 4 cut(s) 355, 459, 478, 941
HinP1I GCGC 4 cut(s) 355, 459, 478, 941
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 7 cut(s) 286, 389, 505, 611, 617, 684, 700
HphI GGTGA 2 cut(s) 256, 912
Hpy166II GTNNAC 3 cut(s) 124, 271, 512
Hpy188I TCNGA 3 cut(s) 597, 616, 622
Hpy188III TCNNGA 3 cut(s) 378, 491, 692
Hpy8I GTNNAC 3 cut(s) 124, 271, 512
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 8 cut(s) 472, 545, 571, 738, 818, 835, 926, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 299, 947
HpyF3I CTNAG 4 cut(s) 24, 209, 288, 317
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 5 cut(s) 185, 494, 523, 569, 783
HspAI GCGC 4 cut(s) 355, 459, 478, 941
Kzo9I GATC 2 cut(s) 452, 829
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 5 cut(s) 56, 153, 442, 655, 840
Lsp1109I GCAGC 2 cut(s) 124, 938
LweI GCATC 1 cut(s) 554
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 4 cut(s) 155, 484, 709, 918
MalI GATC 2 cut(s) 454, 831
MboI GATC 2 cut(s) 452, 829
MboII GAAGA 7 cut(s) 63, 66, 72, 155, 170, 437, 839
MflI RGATCY 2 cut(s) 452, 829
MhlI GDGCHC 3 cut(s) 53, 150, 845
MluCI AATT 3 cut(s) 128, 465, 991
MlyI GAGTC 3 cut(s) 280, 398, 709
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 9 cut(s) 127, 240, 270, 400, 430, 433, 543, 714, 877
MseI TTAA 6 cut(s) 15, 327, 660, 936, 983, 990
MslI CAYNNNNRTG 3 cut(s) 540, 597, 675
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 94, 299, 947
NdeII GATC 2 cut(s) 452, 829
NlaIII CATG 5 cut(s) 185, 494, 523, 569, 783
NlaIV GGNNCC 3 cut(s) 52, 762, 842
NmuCI GTSAC 2 cut(s) 155, 918
NsbI TGCGCA 1 cut(s) 479
NspV TTCGAA 1 cut(s) 7
PagI TCATGA 1 cut(s) 490
PaqCI CACCTGC 1 cut(s) 931
PciSI GCTCTTC 1 cut(s) 138
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 4 cut(s) 505, 611, 617, 684
PkrI GCNGC 2 cut(s) 114, 928
PleI GAGTC 3 cut(s) 280, 397, 708
PpsI GAGTC 3 cut(s) 280, 397, 708
Ppu21I YACGTR 1 cut(s) 515
PpuMI RGGWCCY 1 cut(s) 635
PshAI GACNNNNGTC 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 52, 762, 842
PspPI GGNCC 2 cut(s) 86, 635
PspPPI RGGWCCY 1 cut(s) 635
PstI CTGCAG 2 cut(s) 837, 928
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 2 cut(s) 452, 829
RsaI GTAC 2 cut(s) 225, 272
RsaNI GTAC 2 cut(s) 224, 271
RseI CAYNNNNRTG 3 cut(s) 540, 597, 675
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 6 cut(s) 15, 327, 660, 936, 983, 990
SatI GCNGC 2 cut(s) 113, 927
Sau3AI GATC 2 cut(s) 452, 829
Sau96I GGNCC 2 cut(s) 86, 635
SchI GAGTC 3 cut(s) 280, 398, 709
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 3 cut(s) 53, 150, 845
SfaNI GCATC 1 cut(s) 554
SfcI CTRYAG 3 cut(s) 833, 846, 924
SfuI TTCGAA 1 cut(s) 7
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 3 cut(s) 540, 597, 675
Sse9I AATT 3 cut(s) 128, 465, 991
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 517
TaqI TCGA 3 cut(s) 7, 392, 693
TasI AATT 3 cut(s) 128, 465, 991
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 4 cut(s) 505, 611, 617, 684
Tru1I TTAA 6 cut(s) 15, 327, 660, 936, 983, 990
Tru9I TTAA 6 cut(s) 15, 327, 660, 936, 983, 990
TscAI CASTG 3 cut(s) 158, 369, 842
TseFI GTSAC 2 cut(s) 155, 918
TseI GCWGC 2 cut(s) 112, 926
Tsp45I GTSAC 2 cut(s) 155, 918
TspDTI ATGAA 4 cut(s) 170, 438, 507, 693
TspGWI ACGGA 2 cut(s) 789, 865
TspRI CASTG 3 cut(s) 158, 369, 842
VpaK11BI GGWCC 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.