MD02G1099800.v1.1

Peroxiredoxin Q

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013118
Physical Location & Seq
Reverse (-)
7916126 .. 7917772
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1099800.v1.1.491

Sequence Viewer

Length: 648 bp
ATGGCCTCTCTCTCTGTTCCCAAGCAGCCAGCCTTCCCCTCTCTACTCCCCACCCAAACTCCCAAAGGCTACCCATCTTCCCAAACCCTCCCAATTGCCTCCGGCTCTTCACATTCTAAATTCTATGGCCTCAGGTTCTCCACTTCTTCCACTCTGCCAATCCCTTCATCTTCCTCTGGCAAGATGTTCATTTCTGCTAAGGTGGACAAGGGTACGGTTCCACCAGCCTTCACGTTGAAAGATCAGGATGGAAAAACTGTGAGCTTCTCCAAATTTAAGGGAAAGCCTGTGGTTCTCTATTTCTACCCTGCTGATGAGAGCCCTAGCTGCACCAAACAGGCTTGTGCTTTCAGAGATTCTTACGAGCAGTTTAAGAAGGCCGGCGCCGAGGTTGTAGGGATTAGCGGTGATGACCCATCATCGCACAAGGAGTTTGCAAAGAAGAACAGACTTCCGTTCACATTACTCAGCGATGAGGGTAACAAGGTGAGGAAAGAATGGGGAGTGCCGTCGGATCTGTTTGGGGCGTTGCCAGGGAGACAGACATATGTTCTGGACAAGAATGGGGTGGTTCAACTCATCTACAACAACCAGTTCCAGCCCGAGAAGCATATCGACGAAACTCTCAAACTACTTCAAAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA

Protein Analysis

216

Amino Acids

23.49

Weight (kDa)

9.38

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA PF00578 75 - 193 3e-40 AhpC/TSA family
Redoxin PF08534 75 - 203 9.7e-25 Redoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26060 AT3G26060 AT3G26060
fragaria_vesca FvH4_1g09250
malus_domestica MD02G1099800.v1.1 MD15G1222600.v1.1
prunus_persica Prupe.7G193200_v2.0.a1
pyrus_communis pycom02g07760 pycom15g19670
rosa_chinensis RchiOBHm_Chr2g0095781
rosa_laevigata RLG00000016592
rosa_multiflora Rmu_sc0005941.1_g000001
rosa_roxburghii Rroxscaffold_2G00146100
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG101700 Rh2BG103300 Rh2CG105600
rosa_wichuraiana Rw2G007720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AciI CCGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 522
AcsI RAATTY 2 cut(s) 119, 272
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 3 cut(s) 238, 575, 638
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 2 cut(s) 264, 327
AluI AGCT 2 cut(s) 264, 327
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 1 cut(s) 522
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 3 cut(s) 3, 127, 378
ApeKI GCWGC 2 cut(s) 25, 327
ApoI RAATTY 2 cut(s) 119, 272
AspLEI GCGC 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 419, 499
AvaI CYCGRG 1 cut(s) 602
AxyI CCTNAGG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 37, 314
BccI CCATC 3 cut(s) 82, 242, 424
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 387
BisI GCNGC 2 cut(s) 26, 328
BlsI GCNGC 2 cut(s) 27, 329
Bme1390I CCNGG 1 cut(s) 534
BmeT110I CYCGRG 1 cut(s) 602
BmiI GGNNCC 2 cut(s) 219, 385
BmrFI CCNGG 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 387, 533
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 592
Bse21I CCTNAGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 2 cut(s) 387, 533
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 145, 481
BseNI ACTGG 1 cut(s) 592
BseXI GCAGC 2 cut(s) 37, 314
BsgI GTGCAG 1 cut(s) 313
BshFI GGCC 3 cut(s) 5, 129, 380
BshNI GGYRCC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 2 cut(s) 102, 381
BsmAI GTCTC 1 cut(s) 532
BsnI GGCC 3 cut(s) 5, 129, 380
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 2 cut(s) 241, 514
BspACI CCGC 1 cut(s) 405
BspANI GGCC 3 cut(s) 5, 129, 380
BspCNI CTCAG 2 cut(s) 144, 480
BspLI GGNNCC 2 cut(s) 219, 385
BspPI GGATC 1 cut(s) 522
BspQI GCTCTTC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 1 cut(s) 592
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 387, 533
BssMI GATC 2 cut(s) 241, 514
BssNI GRCGYC 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 217, 259
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 30, 382
BstDEI CTNAG 3 cut(s) 131, 198, 467
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 2 cut(s) 244, 517
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 2 cut(s) 241, 514
BstMWI GCNNNNNNNGC 2 cut(s) 327, 607
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 37, 314
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
Bsu36I CCTNAGG 1 cut(s) 131
BsuRI GGCC 3 cut(s) 5, 129, 380
BtgZI GCGATG 2 cut(s) 405, 486
BtsCI GGATG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 30, 382
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 380
Csp6I GTAC 1 cut(s) 213
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 131, 198, 467
DinI GGCGCC 1 cut(s) 385
DpnI GATC 2 cut(s) 243, 516
DpnII GATC 2 cut(s) 241, 514
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 323
EgeI GGCGCC 1 cut(s) 385
EheI GGCGCC 1 cut(s) 385
FaiI YATR 4 cut(s) 126, 547, 549, 612
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 26, 328
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 26, 328
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 385
GluI GCNGC 2 cut(s) 26, 328
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 3 cut(s) 5, 129, 380
HapII CCGG 2 cut(s) 102, 381
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 384
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 1 cut(s) 356
HpaII CCGG 2 cut(s) 102, 381
HphI GGTGA 2 cut(s) 419, 499
Hpy166II GTNNAC 2 cut(s) 205, 459
Hpy188I TCNGA 2 cut(s) 353, 514
Hpy188III TCNNGA 2 cut(s) 245, 554
Hpy8I GTNNAC 2 cut(s) 205, 459
Hpy99I CGWCG 2 cut(s) 514, 620
HpyAV CCTTC 4 cut(s) 43, 174, 238, 370
HpyCH4III ACNGT 2 cut(s) 217, 259
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 330, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 607
HpyF3I CTNAG 3 cut(s) 131, 198, 467
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 384
HspAI GCGC 1 cut(s) 384
KasI GGCGCC 1 cut(s) 383
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 241, 514
LguI GCTCTTC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 37, 314
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 479
MalI GATC 2 cut(s) 243, 516
MboI GATC 2 cut(s) 241, 514
MboII GAAGA 5 cut(s) 69, 99, 138, 162, 454
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 3 cut(s) 93, 119, 272
Mly113I GGCGCC 1 cut(s) 384
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 9 cut(s) 16, 49, 98, 109, 140, 184, 382, 469, 483
MroNI GCCGGC 1 cut(s) 380
MseI TTAA 2 cut(s) 276, 372
MspI CCGG 2 cut(s) 102, 381
MspR9I CCNGG 1 cut(s) 534
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 327, 607
NaeI GCCGGC 1 cut(s) 382
NarI GGCGCC 1 cut(s) 384
NdeI CATATG 1 cut(s) 547
NdeII GATC 2 cut(s) 241, 514
NgoMIV GCCGGC 1 cut(s) 380
NlaIV GGNNCC 2 cut(s) 219, 385
NmeAIII GCCGAG 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 27, 329
PluTI GGCGCC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 2 cut(s) 219, 385
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 276, 372
SatI GCNGC 2 cut(s) 26, 328
Sau3AI GATC 2 cut(s) 241, 514
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 1 cut(s) 323
SetI ASST 7 cut(s) 137, 204, 236, 266, 329, 393, 489
SfoI GGCGCC 1 cut(s) 385
Sse9I AATT 3 cut(s) 93, 119, 272
SsiI CCGC 1 cut(s) 405
SspDI GGCGCC 1 cut(s) 383
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 217, 259
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 615
TasI AATT 3 cut(s) 93, 119, 272
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 276, 372
Tru9I TTAA 2 cut(s) 276, 372
TseI GCWGC 2 cut(s) 25, 327
TspDTI ATGAA 2 cut(s) 156, 178
TspGWI ACGGA 1 cut(s) 444
XapI RAATTY 2 cut(s) 119, 272
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.