Rh2CG105600

Peroxiredoxin Q

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
9113335 .. 9114929
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG105600.1

Sequence Viewer

Length: 639 bp
ATGGCTTCCCTCTCTCTTCCCAAGCACACCTTTACCTCTCTACTCCCCACTCAAACTCCCAGACACTACTACCCATCTTCTCAAATAGTCTCCAAATCATCAAATTCCCAATTCTATGGCCTCAAGCTCTCCAATTCTACCTCTTTGCCAATCCCATCTTCCTCTTCTGGGAAGAATATCATTTGTGGCAAGGTGGACAAAGGCAAGGTTCCCCCAAATTTTAACTTGAAAGATCAGGATGGTAAATCTGTCAGCCTCTCCAAATTCAAAGGAAAGCCTGTGGTTGTGTATTTTTACCCTGCTGATGAGACTCCAGGGTGCACCAAACAGGCTTGTGCTTTCAGAGATTCTTATGAAAAGTTCAAAAAAGCTGGAGCACAGGTTGTCGGGATTAGTGGAGATGACTCAGCCTCACACAAGGCTTTTGCAAAGAAGTACAAGCTTCCATTCACATTACTAAGTGATGAGGGTAATAAGGTGAGGAAAGAATGGGGAGTGCCATCAGATCTGTTTGGAACTTTGCCTGGAAGACAGACATATGTTCTGGACAAGAATGGAGTGGTTCAACTCGTCTACAACAACCAGTTCCAACCCGAGAAGCATATCGATGAAACACTGAAGCTATTGCAGAGCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

212

Amino Acids

23.34

Weight (kDa)

9.53

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA PF00578 70 - 189 8.3e-42 AhpC/TSA family
Redoxin PF08534 70 - 201 2.5e-27 Redoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26060 AT3G26060 AT3G26060
fragaria_vesca FvH4_1g09250
malus_domestica MD02G1099800.v1.1 MD15G1222600.v1.1
prunus_persica Prupe.7G193200_v2.0.a1
pyrus_communis pycom02g07760 pycom15g19670
rosa_chinensis RchiOBHm_Chr2g0095781
rosa_laevigata RLG00000016592
rosa_multiflora Rmu_sc0005941.1_g000001
rosa_roxburghii Rroxscaffold_2G00146100
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG101700 Rh2BG103300 Rh2CG105600
rosa_wichuraiana Rw2G007720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 573
AcsI RAATTY 3 cut(s) 103, 217, 263
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 4 cut(s) 229, 268, 364, 566
AjnI CCWGG 2 cut(s) 313, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 4 cut(s) 127, 371, 442, 622
AluI AGCT 4 cut(s) 127, 371, 442, 622
Alw21I GWGCWC 2 cut(s) 323, 379
Alw26I GTCTC 2 cut(s) 94, 302
Alw44I GTGCAC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 1 cut(s) 118
ApaLI GTGCAC 1 cut(s) 319
ApoI RAATTY 3 cut(s) 103, 217, 263
AsuHPI GGTGA 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 2 cut(s) 323, 379
BccI CCATC 4 cut(s) 82, 163, 233, 508
BciT130I CCWGG 2 cut(s) 315, 525
BcoDI GTCTC 2 cut(s) 94, 302
BglII AGATCT 1 cut(s) 505
Bme1390I CCNGG 2 cut(s) 315, 525
BmeT110I CYCGRG 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 315, 525
BpiI GAAGAC 1 cut(s) 535
BpmI CTGGAG 2 cut(s) 297, 393
BpuEI CTTGAG 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 606
BsaJI CCNNGG 1 cut(s) 314
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 583
BseBI CCWGG 2 cut(s) 315, 525
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 583
BseSI GKGCMC 1 cut(s) 323
BshFI GGCC 1 cut(s) 120
BshVI ATCGAT 1 cut(s) 606
BsiHKAI GWGCWC 2 cut(s) 323, 379
BsiHKCI CYCGRG 1 cut(s) 593
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 94, 302
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 323, 379
Bsp143I GATC 2 cut(s) 232, 505
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 419
BspDI ATCGAT 1 cut(s) 606
BspLI GGNNCC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 2 cut(s) 232, 505
Bst2UI CCWGG 2 cut(s) 315, 525
Bst6I CTCTTC 2 cut(s) 21, 169
BstDEI CTNAG 2 cut(s) 406, 458
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 235, 508
BstMAI GTCTC 2 cut(s) 94, 302
BstMBI GATC 2 cut(s) 232, 505
BstNI CCWGG 2 cut(s) 315, 525
BstSCI CCNGG 2 cut(s) 313, 523
BstSLI GKGCMC 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 505
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 1 cut(s) 120
BsuTUI ATCGAT 1 cut(s) 606
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 614
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 1 cut(s) 436
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 406, 458
DpnI GATC 2 cut(s) 234, 507
DpnII GATC 2 cut(s) 232, 505
Eam1104I CTCTTC 2 cut(s) 21, 169
EarI CTCTTC 2 cut(s) 21, 169
Eco57I CTGAAG 1 cut(s) 638
Eco88I CYCGRG 1 cut(s) 593
EcoRII CCWGG 2 cut(s) 313, 523
FaiI YATR 5 cut(s) 117, 354, 538, 540, 603
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FauNDI CATATG 1 cut(s) 538
FblI GTMKAC 1 cut(s) 573
FokI GGATG 1 cut(s) 251
GsuI CTGGAG 2 cut(s) 297, 393
HaeIII GGCC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 3 cut(s) 310, 347, 404
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 3 cut(s) 196, 321, 574
Hpy188I TCNGA 2 cut(s) 344, 505
Hpy188III TCNNGA 3 cut(s) 236, 388, 545
Hpy8I GTNNAC 3 cut(s) 196, 321, 574
HpyCH4V TGCA 3 cut(s) 321, 428, 628
HpyF3I CTNAG 2 cut(s) 406, 458
Kzo9I GATC 2 cut(s) 232, 505
LmnI GCTCC 1 cut(s) 374
MalI GATC 2 cut(s) 234, 507
MboI GATC 2 cut(s) 232, 505
MboII GAAGA 6 cut(s) 8, 69, 150, 156, 184, 540
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 2 cut(s) 323, 379
MluCI AATT 5 cut(s) 103, 110, 133, 217, 263
MlyI GAGTC 2 cut(s) 304, 398
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 9 cut(s) 20, 46, 131, 151, 172, 266, 421, 460, 474
MseI TTAA 2 cut(s) 222, 637
MslI CAYNNNNRTG 1 cut(s) 606
MspR9I CCNGG 2 cut(s) 315, 525
MvaI CCWGG 2 cut(s) 315, 525
NdeI CATATG 1 cut(s) 538
NdeII GATC 2 cut(s) 232, 505
NlaIV GGNNCC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 347
PleI GAGTC 2 cut(s) 304, 398
PpsI GAGTC 2 cut(s) 304, 398
Psp6I CCWGG 2 cut(s) 313, 523
PspGI CCWGG 2 cut(s) 313, 523
PspN4I GGNNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 2 cut(s) 222, 637
Sau3AI GATC 2 cut(s) 232, 505
SchI GAGTC 2 cut(s) 304, 398
ScrFI CCNGG 2 cut(s) 315, 525
SduI GDGCHC 2 cut(s) 323, 379
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 5 cut(s) 103, 110, 133, 217, 263
StyD4I CCNGG 2 cut(s) 313, 523
TaqI TCGA 1 cut(s) 606
TasI AATT 5 cut(s) 103, 110, 133, 217, 263
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 2 cut(s) 222, 637
Tru9I TTAA 2 cut(s) 222, 637
TscAI CASTG 1 cut(s) 621
TspDTI ATGAA 2 cut(s) 369, 624
TspRI CASTG 1 cut(s) 621
VneI GTGCAC 1 cut(s) 319
XapI RAATTY 3 cut(s) 103, 217, 263
XmiI GTMKAC 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.