MD15G1222600.v1.1

Peroxiredoxin Q

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013118
Physical Location & Seq
Reverse (-)
18077917 .. 18079608
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1222600.v1.1.491

Sequence Viewer

Length: 648 bp
ATGGCCTCCCTCTCTGTTCCCAAGCACCCAGCCTTCCCCTCTGTACTTCGCACCCTAACTCCCAAACGCTACCCATCTTCTCAAACCCTCCCAATTGTCTCCAGCTCTTCACATTCCCCGTTCTATGGCCTCAAGTTCTCCACTTCTTCCACTCTGCCAATCCCTTCATCTTCCTCTGGCAAGATGTTCATTTCTGCTAAGGTGGACAAGGGTAAGGTTCCTCCAGCCTTCACATTGAAAGATCAGGATGGAAAGACAGTGAGCCTCTCCAAGTTCAAGGGAAAGCCTGTGGTTCTATATTTCTACCCTGCTGATGAGACCCCTGGCTGCACTAAACAGGCTTGTGCTTTCAGAGATTCTTATGAGAAGTTTAAAAAGGCCGGTGCCCAGGTTGTCGGGATTAGCGGTGATGACCCCTCATCACACAAGGCTTTTGCAAAGAAGTACAAACTTCCATTCACATTACTAAGCGATGAGGGCAACAAGGTGAGGAAAGAATGGGGAGTGCCGTCGGATCTGTTTGGGACATTGCCCGGGAGACAGACATATGTTCTGGACAAGAATGGGGTGGTTCAACTCATCTACAACAACCAATTCCAACCAGAGAAGCATATCGACGAAACTCTCAAACTACTTCAAAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA

Protein Analysis

216

Amino Acids

23.6

Weight (kDa)

9.66

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 73 - 203 5.7e-27 Redoxin
AhpC-TSA PF00578 74 - 193 8.7e-43 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26060 AT3G26060 AT3G26060
fragaria_vesca FvH4_1g09250
malus_domestica MD02G1099800.v1.1 MD15G1222600.v1.1
prunus_persica Prupe.7G193200_v2.0.a1
pyrus_communis pycom02g07760 pycom15g19670
rosa_chinensis RchiOBHm_Chr2g0095781
rosa_laevigata RLG00000016592
rosa_multiflora Rmu_sc0005941.1_g000001
rosa_roxburghii Rroxscaffold_2G00146100
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG101700 Rh2BG103300 Rh2CG105600
rosa_wichuraiana Rw2G007720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AciI CCGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 522
AfaI GTAC 2 cut(s) 45, 446
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 238, 277, 575, 638
AjnI CCWGG 2 cut(s) 322, 387
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 103, 311, 532
AlwI GGATC 1 cut(s) 522
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 3 cut(s) 3, 127, 378
ApeKI GCWGC 1 cut(s) 327
AsuC2I CCSGG 2 cut(s) 534, 535
AsuHPI GGTGA 2 cut(s) 419, 499
AvaI CYCGRG 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 82, 242
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 2 cut(s) 324, 389
BcnI CCSGG 2 cut(s) 534, 535
BcoDI GTCTC 3 cut(s) 103, 311, 532
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 4 cut(s) 324, 389, 534, 535
BmeT110I CYCGRG 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 219, 385
BmrFI CCNGG 4 cut(s) 324, 389, 534, 535
BpmI CTGGAG 2 cut(s) 85, 207
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 534, 535
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 322, 387, 533
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 2 cut(s) 324, 389
BseDI CCNNGG 3 cut(s) 322, 387, 533
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 1 cut(s) 314
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 313
BshFI GGCC 3 cut(s) 5, 129, 380
BshNI GGYRCC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 2 cut(s) 381, 534
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 3 cut(s) 103, 311, 532
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 3 cut(s) 5, 129, 380
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 2 cut(s) 241, 514
BspACI CCGC 1 cut(s) 405
BspANI GGCC 3 cut(s) 5, 129, 380
BspLI GGNNCC 2 cut(s) 219, 385
BspPI GGATC 1 cut(s) 522
BspQI GCTCTTC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 322, 387, 533
BssMI GATC 2 cut(s) 241, 514
Bst2UI CCWGG 2 cut(s) 324, 389
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 198, 467
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 244, 517
BstMAI GTCTC 3 cut(s) 103, 311, 532
BstMBI GATC 2 cut(s) 241, 514
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNI CCWGG 2 cut(s) 324, 389
BstSCI CCNGG 4 cut(s) 322, 387, 532, 533
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 3 cut(s) 5, 129, 380
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 380
Cfr9I CCCGGG 1 cut(s) 533
Csp6I GTAC 2 cut(s) 44, 445
CviQI GTAC 2 cut(s) 44, 445
DdeI CTNAG 2 cut(s) 198, 467
DpnI GATC 2 cut(s) 243, 516
DpnII GATC 2 cut(s) 241, 514
DraI TTTAAA 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 322, 387
FaiI YATR 6 cut(s) 126, 298, 363, 547, 549, 612
FaqI GGGAC 1 cut(s) 538
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 328
GluI GCNGC 1 cut(s) 328
GsaI CCCAGC 1 cut(s) 32
GsuI CTGGAG 2 cut(s) 85, 207
HaeIII GGCC 3 cut(s) 5, 129, 380
HapII CCGG 2 cut(s) 381, 534
HinfI GANTC 1 cut(s) 356
HpaII CCGG 2 cut(s) 381, 534
HphI GGTGA 2 cut(s) 419, 499
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 353, 514
Hpy188III TCNNGA 3 cut(s) 245, 397, 554
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 2 cut(s) 514, 620
HpyAV CCTTC 3 cut(s) 43, 174, 238
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 330, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 2 cut(s) 198, 467
Kzo9I GATC 2 cut(s) 241, 514
LguI GCTCTTC 1 cut(s) 112
Lsp1109I GCAGC 1 cut(s) 314
MalI GATC 2 cut(s) 243, 516
MboI GATC 2 cut(s) 241, 514
MboII GAAGA 4 cut(s) 69, 99, 138, 162
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 2 cut(s) 93, 593
MmeI TCCRAC 2 cut(s) 492, 622
MseI TTAA 1 cut(s) 372
MspI CCGG 2 cut(s) 381, 534
MspR9I CCNGG 4 cut(s) 324, 389, 534, 535
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 2 cut(s) 324, 389
MwoI GCNNNNNNNGC 1 cut(s) 477
NciI CCSGG 2 cut(s) 534, 535
NdeI CATATG 1 cut(s) 547
NdeII GATC 2 cut(s) 241, 514
NlaIV GGNNCC 2 cut(s) 219, 385
PciSI GCTCTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 1 cut(s) 329
Psp6I CCWGG 2 cut(s) 322, 387
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 2 cut(s) 322, 387
PspN4I GGNNCC 2 cut(s) 219, 385
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 2 cut(s) 45, 446
RsaNI GTAC 2 cut(s) 44, 445
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 2 cut(s) 241, 514
ScrFI CCNGG 4 cut(s) 324, 389, 534, 535
SduI GDGCHC 1 cut(s) 388
SetI ASST 5 cut(s) 107, 204, 219, 393, 489
SmaI CCCGGG 1 cut(s) 535
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 93, 593
SsiI CCGC 1 cut(s) 405
StyD4I CCNGG 4 cut(s) 322, 387, 532, 533
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 615
TasI AATT 2 cut(s) 93, 593
TatI WGTACW 2 cut(s) 43, 444
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 264
TseI GCWGC 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 156, 178
TspMI CCCGGG 1 cut(s) 533
TspRI CASTG 1 cut(s) 264
XmaI CCCGGG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.