pycom02g07760

Peroxiredoxin Q

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013118
Physical Location & Seq
Reverse (-)
5469454 .. 5470736
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07760.2

Sequence Viewer

Length: 648 bp
ATGGCCTCTCTCTCAGTTCCCAAGCAGCCAGCCTTCCCCTCTCTACTCCCCACCCAAACTCCCAAACACTACCCATCTTCCCAAACCCTCCCAATTGCCTCCAGCTCTTCACATTCTAAATTCTATGGCCTCAAGTTCTCCACTTCTTCCACTCTGCCAATCCCTTCATCTTCCTCTGGCAAGATGTTCATTTCTGCTAAGGTGGACAAGGGTACGGTTCCACCAGCCTTCACGTTGAAAGATCAGGATGGAAAAACTGTGAGCCTCTCCAAATTTAAGGGAAAGCCTGTGGTTCTCTATTTCTACCCTGCTGATGAGAGCCCTAGCTGCACCAAACAGGCTTGTGCTTTCAGAGATTCTTACGAGAAGTTTAAGAAGGCGGGTGCCGAGGTTGTAGGGATCAGCGGTGATGACCCATCATCACACAAGGAGTTTGCAAAGAAGAACAGACTTCCGTTCACATTACTCAGCGATGAGGGTAACAAGGTGAGGAAAGAATGGGGAGTGCCGTCGGATCTGTTTGGGGCATTGCCAGGGAGACAGACATATGTTATGGACAAGAATGGGGTGGTTCAGCTCATCTACAACAACCAGTTCCAGCCCGAGAAGCATATCGACGAAACTCTCAAACTACTTCAAAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA

Protein Analysis

216

Amino Acids

23.56

Weight (kDa)

9.43

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26060 AT3G26060 AT3G26060
fragaria_vesca FvH4_1g09250
malus_domestica MD02G1099800.v1.1 MD15G1222600.v1.1
prunus_persica Prupe.7G193200_v2.0.a1
pyrus_communis pycom02g07760 pycom15g19670
rosa_chinensis RchiOBHm_Chr2g0095781
rosa_laevigata RLG00000016592
rosa_multiflora Rmu_sc0005941.1_g000001
rosa_roxburghii Rroxscaffold_2G00146100
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG101700 Rh2BG103300 Rh2CG105600
rosa_wichuraiana Rw2G007720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AciI CCGC 2 cut(s) 380, 405
AclWI GGATC 2 cut(s) 407, 522
AcsI RAATTY 2 cut(s) 119, 272
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 2 cut(s) 238, 638
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 3 cut(s) 105, 327, 577
AluI AGCT 3 cut(s) 105, 327, 577
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 2 cut(s) 407, 522
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 2 cut(s) 3, 127
ApeKI GCWGC 2 cut(s) 25, 327
ApoI RAATTY 2 cut(s) 119, 272
AsuHPI GGTGA 2 cut(s) 419, 499
AvaI CYCGRG 1 cut(s) 602
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 37, 314
BccI CCATC 3 cut(s) 82, 242, 424
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 1 cut(s) 324
BisI GCNGC 2 cut(s) 26, 328
BlsI GCNGC 2 cut(s) 27, 329
Bme1390I CCNGG 1 cut(s) 534
BmeT110I CYCGRG 1 cut(s) 602
BmiI GGNNCC 2 cut(s) 219, 385
BmrFI CCNGG 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 387, 533
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 2 cut(s) 387, 533
BseGI GGATG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 2 cut(s) 27, 481
BseNI ACTGG 1 cut(s) 592
BseXI GCAGC 2 cut(s) 37, 314
BsgI GTGCAG 1 cut(s) 313
BshFI GGCC 2 cut(s) 5, 129
BshNI GGYRCC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 532
BsnI GGCC 2 cut(s) 5, 129
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 3 cut(s) 241, 399, 514
BspACI CCGC 2 cut(s) 380, 405
BspANI GGCC 2 cut(s) 5, 129
BspCNI CTCAG 2 cut(s) 26, 480
BspLI GGNNCC 2 cut(s) 219, 385
BspPI GGATC 2 cut(s) 407, 522
BspQI GCTCTTC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 527
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 387, 533
BssMI GATC 3 cut(s) 241, 399, 514
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 217, 259
Bst6I CTCTTC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 13, 198, 467
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 3 cut(s) 244, 402, 517
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 3 cut(s) 241, 399, 514
BstMWI GCNNNNNNNGC 2 cut(s) 327, 607
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 37, 314
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 2 cut(s) 5, 129
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 213
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 13, 198, 467
DpnI GATC 3 cut(s) 243, 401, 516
DpnII GATC 3 cut(s) 241, 399, 514
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 323
FaiI YATR 5 cut(s) 126, 547, 549, 554, 612
FauI CCCGC 1 cut(s) 373
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 26, 328
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 26, 328
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 26, 328
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 2 cut(s) 5, 129
HinfI GANTC 1 cut(s) 356
HphI GGTGA 2 cut(s) 419, 499
Hpy166II GTNNAC 2 cut(s) 205, 459
Hpy188I TCNGA 2 cut(s) 353, 514
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 205, 459
Hpy99I CGWCG 2 cut(s) 514, 620
HpyAV CCTTC 4 cut(s) 43, 174, 238, 370
HpyCH4III ACNGT 2 cut(s) 217, 259
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 330, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 607
HpyF3I CTNAG 3 cut(s) 13, 198, 467
HpySE526I ACGT 1 cut(s) 233
Kzo9I GATC 3 cut(s) 241, 399, 514
LguI GCTCTTC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 37, 314
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 479
MalI GATC 3 cut(s) 243, 401, 516
MboI GATC 3 cut(s) 241, 399, 514
MboII GAAGA 5 cut(s) 69, 99, 138, 162, 454
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 3 cut(s) 93, 119, 272
MmeI TCCRAC 1 cut(s) 492
MseI TTAA 2 cut(s) 276, 372
MspA1I CMGCKG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 534
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 327, 607
NdeI CATATG 1 cut(s) 547
NdeII GATC 3 cut(s) 241, 399, 514
NlaIV GGNNCC 2 cut(s) 219, 385
NmeAIII GCCGAG 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 27, 329
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 2 cut(s) 219, 385
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 276, 372
SatI GCNGC 2 cut(s) 26, 328
Sau3AI GATC 3 cut(s) 241, 399, 514
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 1 cut(s) 323
SetI ASST 7 cut(s) 107, 204, 236, 329, 393, 489, 579
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 93, 119, 272
SsiI CCGC 2 cut(s) 380, 405
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 217, 259
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 615
TasI AATT 3 cut(s) 93, 119, 272
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 276, 372
Tru9I TTAA 2 cut(s) 276, 372
TseI GCWGC 2 cut(s) 25, 327
TspDTI ATGAA 2 cut(s) 156, 178
TspGWI ACGGA 1 cut(s) 444
XapI RAATTY 2 cut(s) 119, 272
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.