Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013118

Physical Location & Seq

Genomic Coordinates Forward (+)

18395716 .. 18397639

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTTCCCTTTCTCTTCCTAAGCACCACTTCCCTTCTGTGCTCCCCACTCAAACTCCTAGACACAACCCATCTTCGAAAAGCCTCCCAATTGTCTCAAGTTCATCACATTCTCAATTTTATGGCCTCAAGCTCTCCAATTCCTCCTCTTTGCCAATCCCTTCTTCTTCTTCTTCTGGAAAGATGTTTATTTGTGCTGCTAAGGTGGACAAGGGTAAGGTTCCACCAGCCTTCACATTGAAAGATCAGGATGGAAAAACTGTGAGTCTCTCCAAGTTCAAAGGAAAGCCTGTGGTTCTCTATTTCTACCCTGCTGATGAGACCCCAGGGTGCACCAAACAGGCTTGTGCTTTCAGAGATTCTTATGAGAAGTTTAAAAAGGCTGGAGCCCAGGTCGTCGGAATTAGTGGTGATGACCCATCATCACACAAGGCTTTTGCAAAGAAATACAAACTTCCATACACATTACTTAGCGACGAGGGTAATAAGGTGAGGAAAGAATGGGGAGTGCCATCCGATCTGTTTGGGACATTGCCTGGAAGACAGACTTATGTTCTGGACAAGAATGGGGTTGTTCAACTCATCTACAACAACCAGTTCCAACCTGAGAAGCATATTGATGAAACTCTCAAATTCCTTCAAAGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA

Protein Analysis

217

Amino Acids

23.7

Weight (kDa)

9.55

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26060 AT3G26060 AT3G26060
fragaria_vesca	FvH4_1g09250
malus_domestica	MD02G1099800.v1.1 MD15G1222600.v1.1
prunus_persica	Prupe.7G193200_v2.0.a1
pyrus_communis	pycom02g07760 pycom15g19670
rosa_chinensis	RchiOBHm_Chr2g0095781
rosa_laevigata	RLG00000016592
rosa_multiflora	Rmu_sc0005941.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146100
rosa_rugosa	Rorug02G0053200
rosa_samantha	Rh2AG101700 Rh2BG103300 Rh2CG105600
rosa_wichuraiana	Rw2G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	241, 280, 578, 641
AjnI	CCWGG	3 cut(s)	325, 390, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	2 cut(s)	45, 335
Alw26I	GTCTC	3 cut(s)	100, 272, 314
Alw44I	GTGCAC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	632
AsuHPI	GGTGA	2 cut(s)	422, 502
AsuII	TTCGAA	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	2 cut(s)	45, 335
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	4 cut(s)	79, 245, 427, 520
BciT130I	CCWGG	3 cut(s)	327, 392, 537
BcoDI	GTCTC	3 cut(s)	100, 272, 314
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	327, 392, 537
BmiI	GGNNCC	2 cut(s)	222, 388
BmrFI	CCNGG	3 cut(s)	327, 392, 537
BpiI	GAAGAC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	2 cut(s)	21, 201
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	82, 113
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	325, 326, 390
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 378, 408
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	530
BseBI	CCWGG	3 cut(s)	327, 392, 537
BseDI	CCNNGG	3 cut(s)	325, 326, 390
BseGI	GGATG	2 cut(s)	256, 512
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	45, 335
BslFI	GGGAC	1 cut(s)	541
BsmAI	GTCTC	3 cut(s)	100, 272, 314
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	45, 335, 391
Bsp143I	GATC	2 cut(s)	244, 517
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	222, 388
BspT104I	TTCGAA	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	3 cut(s)	325, 326, 390
BssMI	GATC	2 cut(s)	244, 517
Bst2UI	CCWGG	3 cut(s)	327, 392, 537
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	21, 201, 470, 606
BstF5I	GGATG	2 cut(s)	256, 512
BstKTI	GATC	2 cut(s)	247, 520
BstMAI	GTCTC	3 cut(s)	100, 272, 314
BstMBI	GATC	2 cut(s)	244, 517
BstNI	CCWGG	3 cut(s)	327, 392, 537
BstSCI	CCNGG	3 cut(s)	325, 390, 535
BstSLI	GKGCMC	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	256, 512
DdeI	CTNAG	4 cut(s)	21, 201, 470, 606
DpnI	GATC	2 cut(s)	246, 519
DpnII	GATC	2 cut(s)	244, 517
DraI	TTTAAA	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	325, 390, 535
EcoT38I	GRGCYC	1 cut(s)	391
FaiI	YATR	5 cut(s)	123, 366, 460, 552, 615
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 532, 564
FaqI	GGGAC	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	263, 499
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	265, 359
HphI	GGTGA	2 cut(s)	422, 502
Hpy166II	GTNNAC	2 cut(s)	208, 333
Hpy188I	TCNGA	3 cut(s)	356, 401, 517
Hpy188III	TCNNGA	3 cut(s)	177, 248, 557
Hpy8I	GTNNAC	2 cut(s)	208, 333
Hpy99I	CGWCG	2 cut(s)	401, 479
HpyAV	CCTTC	4 cut(s)	45, 171, 241, 647
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	333, 440
HpyF3I	CTNAG	4 cut(s)	21, 201, 470, 606
Kzo9I	GATC	2 cut(s)	244, 517
LmnI	GCTCC	2 cut(s)	48, 386
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	60
MalI	GATC	2 cut(s)	246, 519
MboI	GATC	2 cut(s)	244, 517
MboII	GAAGA	7 cut(s)	8, 66, 156, 159, 162, 165, 552
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	3 cut(s)	45, 335, 391
MluCI	AATT	5 cut(s)	90, 116, 139, 402, 632
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	2 cut(s)	379, 625
MnlI	CCTC	6 cut(s)	95, 137, 154, 157, 472, 486
MseI	TTAA	2 cut(s)	375, 649
MslI	CAYNNNNRTG	1 cut(s)	618
MspR9I	CCNGG	3 cut(s)	327, 392, 537
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	3 cut(s)	327, 392, 537
NdeII	GATC	2 cut(s)	244, 517
NlaIV	GGNNCC	2 cut(s)	222, 388
NspV	TTCGAA	1 cut(s)	77
PasI	CCCWGGG	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	325, 390, 535
PspGI	CCWGG	3 cut(s)	325, 390, 535
PspN4I	GGNNCC	2 cut(s)	222, 388
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	375, 649
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	244, 517
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	3 cut(s)	327, 392, 537
SduI	GDGCHC	3 cut(s)	45, 335, 391
SetI	ASST	6 cut(s)	135, 207, 222, 396, 492, 607
SfuI	TTCGAA	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	97, 128
SmoI	CTYRAG	2 cut(s)	97, 128
Sse9I	AATT	5 cut(s)	90, 116, 139, 402, 632
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	325, 390, 535
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	77
TasI	AATT	5 cut(s)	90, 116, 139, 402, 632
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	375, 649
Tru9I	TTAA	2 cut(s)	375, 649
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	93, 636
VneI	GTGCAC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	632
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.