pycom15g19670

Peroxiredoxin Q

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013118
Physical Location & Seq
Reverse (-)
14102975 .. 14104445
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g19670.2

Sequence Viewer

Length: 804 bp
ATGCATTCGTCCACAAAAGCCAGTCTATCCCCATCTTCTCCCCAACACCCAACACTCCCTCCCTTATCTTCCTCCACCAATTGTGAAAAAACCACCAGAGAAACAGAGAAACTAAGGAGGACACTTCATATTTCTCTCTGGTTCCAATCCAATCCAATGGCCTCCCTCTCTGTTCCCAAGCACCCAGCCTTCCCCTCTCTACTTCCCACCCAAACTCCCAAACACCACCCATCTTCTCAAACCCTCCCAATTGTCTCCAGCTCTTCACATTCCCAGTTCTATGGCCTCAAGTTCTCCACTTCTTCCACTCTGCCAATCCCTTCATCTTCCTCTGGCAAGATGTTCATTTCTGCTAAGGTGGACAAGGGTAAGGTTCCTCCAGCCTTCACATTGAAAGATCAGGATGGAAAGACAGTGAGCCTCTCCAAGTTCAAGGGAAAGCCTGTGGTTCTATATTTCTACCCTGCTGATGAGACCCCTGGCTGCACTAAACAGGCTTGTGCTTTCAGAGATTCTTATGAGAAGTTTAAAAAGGCCGGTGCCCAGGTTGTCGGGATTAGTGGTGATGACCCCTCATCACACAAGGCTTTTGCAAAGAAGTACAAACTTCCATTCACATTACTAAGCGATGAGGGCAACAAGGTGAGGAAAGAATGGGGAGTGCCGTCGGATCTGTTTGGGACATTGCCCGGGAGGCAGACATATGTTCTGGACAAGAATGGGGTGGTAAAACTCATCTACAACAATCAGTTCCAACCAGAGAAGCATATCGACGAAACTCTCAAACTACTTCAAAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA

Protein Analysis

268

Amino Acids

29.37

Weight (kDa)

9.67

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26060 AT3G26060 AT3G26060
fragaria_vesca FvH4_1g09250
malus_domestica MD02G1099800.v1.1 MD15G1222600.v1.1
prunus_persica Prupe.7G193200_v2.0.a1
pyrus_communis pycom02g07760 pycom15g19670
rosa_chinensis RchiOBHm_Chr2g0095781
rosa_laevigata RLG00000016592
rosa_multiflora Rmu_sc0005941.1_g000001
rosa_roxburghii Rroxscaffold_2G00146100
rosa_rugosa Rorug02G0053200
rosa_samantha Rh2AG101700 Rh2BG103300 Rh2CG105600
rosa_wichuraiana Rw2G007720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AclWI GGATC 1 cut(s) 678
AfaI GTAC 1 cut(s) 602
AgsI TTSAA 3 cut(s) 394, 433, 794
AjnI CCWGG 2 cut(s) 478, 543
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 2 cut(s) 259, 467
AlwI GGATC 1 cut(s) 678
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 3 cut(s) 159, 283, 534
ApeKI GCWGC 1 cut(s) 483
AsuC2I CCSGG 2 cut(s) 690, 691
AsuHPI GGTGA 2 cut(s) 575, 655
AvaI CYCGRG 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 539
BbvI GCAGC 1 cut(s) 470
BccI CCATC 3 cut(s) 40, 238, 398
BceAI ACGGC 1 cut(s) 649
BciT130I CCWGG 2 cut(s) 480, 545
BcnI CCSGG 2 cut(s) 690, 691
BcoDI GTCTC 2 cut(s) 259, 467
BglI GCCNNNNNGGC 1 cut(s) 694
BisI GCNGC 1 cut(s) 484
BlsI GCNGC 1 cut(s) 485
Bme1390I CCNGG 4 cut(s) 480, 545, 690, 691
BmeT110I CYCGRG 1 cut(s) 689
BmiI GGNNCC 3 cut(s) 143, 375, 541
BmrFI CCNGG 4 cut(s) 480, 545, 690, 691
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpmI CTGGAG 2 cut(s) 241, 363
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 690, 691
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 3 cut(s) 478, 543, 689
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 199, 229
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 21, 274
Bse3DI GCAATG 1 cut(s) 683
BseBI CCWGG 2 cut(s) 480, 545
BseDI CCNNGG 3 cut(s) 478, 543, 689
BseGI GGATG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 683
BseNI ACTGG 2 cut(s) 21, 274
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 469
BshFI GGCC 3 cut(s) 161, 285, 536
BshNI GGYRCC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 537, 690
BslFI GGGAC 1 cut(s) 694
BsmAI GTCTC 2 cut(s) 259, 467
BsmFI GGGAC 1 cut(s) 694
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 3 cut(s) 161, 285, 536
Bso31I GGTCTC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 2 cut(s) 397, 670
BspANI GGCC 3 cut(s) 161, 285, 536
BspLI GGNNCC 3 cut(s) 143, 375, 541
BspPI GGATC 1 cut(s) 678
BspQI GCTCTTC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 683
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 2 cut(s) 21, 274
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 3 cut(s) 478, 543, 689
BssMI GATC 2 cut(s) 397, 670
Bst2UI CCWGG 2 cut(s) 480, 545
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 268
BstDEI CTNAG 3 cut(s) 113, 354, 623
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 2 cut(s) 400, 673
BstMAI GTCTC 2 cut(s) 259, 467
BstMBI GATC 2 cut(s) 397, 670
BstMWI GCNNNNNNNGC 2 cut(s) 633, 694
BstNI CCWGG 2 cut(s) 480, 545
BstSCI CCNGG 4 cut(s) 478, 543, 688, 689
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 2 cut(s) 157, 281
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 3 cut(s) 161, 285, 536
BtgZI GCGATG 1 cut(s) 642
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 420
Cfr10I RCCGGY 1 cut(s) 536
Cfr9I CCCGGG 1 cut(s) 689
Csp6I GTAC 1 cut(s) 601
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 113, 354, 623
DpnI GATC 2 cut(s) 399, 672
DpnII GATC 2 cut(s) 397, 670
DraI TTTAAA 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 478, 543
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 7 cut(s) 129, 282, 454, 519, 703, 705, 768
FaqI GGGAC 1 cut(s) 694
FauNDI CATATG 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 484
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 1 cut(s) 484
GluI GCNGC 1 cut(s) 484
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 241, 363
HaeIII GGCC 3 cut(s) 161, 285, 536
HapII CCGG 2 cut(s) 537, 690
HinfI GANTC 1 cut(s) 512
HpaII CCGG 2 cut(s) 537, 690
HphI GGTGA 2 cut(s) 575, 655
Hpy166II GTNNAC 2 cut(s) 12, 361
Hpy188I TCNGA 2 cut(s) 509, 670
Hpy188III TCNNGA 3 cut(s) 401, 553, 710
Hpy8I GTNNAC 2 cut(s) 12, 361
Hpy99I CGWCG 2 cut(s) 670, 776
HpyAV CCTTC 3 cut(s) 199, 330, 394
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 4, 486, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 633, 694
HpyF3I CTNAG 3 cut(s) 113, 354, 623
Kzo9I GATC 2 cut(s) 397, 670
LguI GCTCTTC 1 cut(s) 268
Lsp1109I GCAGC 1 cut(s) 470
MalI GATC 2 cut(s) 399, 672
MboI GATC 2 cut(s) 397, 670
MboII GAAGA 6 cut(s) 27, 60, 225, 255, 294, 318
MfeI CAATTG 2 cut(s) 79, 249
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 2 cut(s) 79, 249
MmeI TCCRAC 2 cut(s) 648, 778
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 528
MspI CCGG 2 cut(s) 537, 690
MspR9I CCNGG 4 cut(s) 480, 545, 690, 691
MunI CAATTG 2 cut(s) 79, 249
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 480, 545
MwoI GCNNNNNNNGC 2 cut(s) 633, 694
NciI CCSGG 2 cut(s) 690, 691
NdeI CATATG 1 cut(s) 703
NdeII GATC 2 cut(s) 397, 670
NlaIV GGNNCC 3 cut(s) 143, 375, 541
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 268
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 512
PkrI GCNGC 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 478, 543
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 2 cut(s) 478, 543
PspN4I GGNNCC 3 cut(s) 143, 375, 541
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 1 cut(s) 484
Sau3AI GATC 2 cut(s) 397, 670
ScrFI CCNGG 4 cut(s) 480, 545, 690, 691
SduI GDGCHC 1 cut(s) 544
SetI ASST 5 cut(s) 263, 360, 375, 549, 645
SmaI CCCGGG 1 cut(s) 691
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 79, 249
StyD4I CCNGG 4 cut(s) 478, 543, 688, 689
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 771
TasI AATT 2 cut(s) 79, 249
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 420
TseI GCWGC 1 cut(s) 483
TspDTI ATGAA 3 cut(s) 116, 312, 334
TspMI CCCGGG 1 cut(s) 689
TspRI CASTG 1 cut(s) 420
XmaI CCCGGG 1 cut(s) 689
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.