Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0018898

Physical Location & Seq

Genomic Coordinates Forward (+)

8172462 .. 8175836

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1101600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCTCAAAGGCAAGTGGGAGAAACTGCCCTAAATGATAAAAGCTCAAGATCACATCAGATAATAAGGCTGACCATAGAAAATAGCCTCCGGGAGAGTTCAAGGTCTGTGAAGGCTTTTGGAGCGAGTTTGAACCTTGTGGACCTTGCTGGAAGTGAGCATGCCTCCCAAACAAATGCAGATGGTGCAAGATTGAAGGAAGGCAGTCACATTAACCGTAGCTTGTTGACACTCACAACCATTATCAGGAAGCTAAGTGGTGGAAAAAGAAGTGGTCACATACCATATCGGGATTCAAAACTTACTCGACTACTGCAGTCTTCACTTGGGGGAAATGCTCAGACAGCGATTATATGCACCATTAGCCCAGCCTTGAGTCATGTAGAGCAAACAAGGAACACACTCTCGTTTGCAACTAGTGCCAAGGAAGTCACTAATAGTGTGAAAATAAACATGAAGGAAGTAGCCAGACTTGAAGCGGAGTTACAAAGTCCAGAGCCTTCTTATTTGAGGTCTATACTGGAAGAAAAGGACTTGAAAATCCAACAGAAACTTCATTTTAAAGATGGAAAGGGAAAGTGCAGAAGGTACTATTGGGGTCGGACCAATGTGGACCTTCTGGTCAAGTCGCTATGTGTCTTTCTTTTCCTGGAGAGAATGAAACAGTTCCTACTCATAGTAGGGAGATCAGTTGCTTCTACAGATCCATCCATGCTTGTGAATGAAATACGAAAGCTTGAGCAAAGACAGAAACAGCTTGGTGATGAGGCAAATCGAGCACTTGAAGTACTGCTTGAGGAGGTAGCTTTGCATCAGCTGGGAAATAAAGAAACCGCTGAAACTACAGCAAGGCTTCTGTCTGAAATAAAGGAAATACAAGCCGTTAGATCCATTTCAGAAGAATCTGTGACTGCTGAAAGGGCCAACTTGAAAGATGAGATCAGTCGATGGCAAACTCAGGCAGAAGATATTAAATCTTTAGAAAGGAAGCTTGAGAATGTTCAGAAATCAATAGACCAGGTGGTTGTTTCATTTTCAAATAGTGAGGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

352

Amino Acids

39.37

Weight (kDa)

9.22

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	2 - 144	5.7e-51	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018898)

Species	Orthologous Gene IDs
malus_domestica	MD02G1101600.v1.1 MD02G1102000.v1.1
pyrus_communis	pycom02g07970
rosa_multiflora	Rmu_sc0010835.1_g000003 Rmu_sc0021237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087080 Rroxscaffold_3G00267430 Rroxscaffold_6G00414250
rosa_wichuraiana	Rw7G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
AciI	CCGC	2 cut(s)	479, 834
AclWI	GGATC	2 cut(s)	698, 882
AfaI	GTAC	2 cut(s)	590, 789
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	9 cut(s)	102, 133, 196, 297, 476, 538, 785, 931, 1038
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	2 cut(s)	648, 1017
AjuI	GAANNNNNNNTTGG	4 cut(s)	537, 569, 577, 609
AluBI	AGCT	8 cut(s)	45, 222, 253, 736, 757, 806, 817, 991
AluI	AGCT	8 cut(s)	45, 222, 253, 736, 757, 806, 817, 991
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	698, 882
AoxI	GGCC	1 cut(s)	921
Asp700I	GAANNNNTTC	1 cut(s)	665
AspS9I	GGNCC	4 cut(s)	142, 603, 613, 921
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	773
AvaII	GGWCC	3 cut(s)	142, 603, 613
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	781
BccI	CCATC	4 cut(s)	176, 560, 715, 942
BceAI	ACGGC	1 cut(s)	866
BciT130I	CCWGG	2 cut(s)	650, 1019
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	3 cut(s)	314, 699, 843
BmcAI	AGTACT	1 cut(s)	789
Bme1390I	CCNGG	3 cut(s)	92, 650, 1019
Bme18I	GGWCC	3 cut(s)	142, 603, 613
BmgT120I	GGNCC	4 cut(s)	142, 603, 613, 921
BmrFI	CCNGG	3 cut(s)	92, 650, 1019
BmsI	GCATC	1 cut(s)	820
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	1 cut(s)	671
BpuEI	CTTGAG	5 cut(s)	31, 394, 758, 815, 1013
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	650, 1019
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	707
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	353, 971
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	812
BseYI	CCCAGC	2 cut(s)	367, 817
BsgI	GTGCAG	1 cut(s)	601
BshFI	GGCC	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	923
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	5 cut(s)	50, 686, 703, 887, 939
BspACI	CCGC	2 cut(s)	479, 834
BspANI	GGCC	1 cut(s)	923
BspCNI	CTCAG	2 cut(s)	352, 970
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	2 cut(s)	698, 882
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	5 cut(s)	50, 686, 703, 887, 939
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	650, 1019
Bst4CI	ACNGT	2 cut(s)	218, 666
BstAPI	GCANNNNNTGC	2 cut(s)	185, 419
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	254, 339, 957
BstF5I	GGATG	1 cut(s)	707
BstKTI	GATC	5 cut(s)	53, 689, 706, 890, 942
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	50, 686, 703, 887, 939
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 185, 344, 363, 419, 776, 920
BstNI	CCWGG	2 cut(s)	650, 1019
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	3 cut(s)	90, 648, 1017
BstSFI	CTRYAG	3 cut(s)	314, 699, 843
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	703, 887
BstYI	RGATCY	2 cut(s)	703, 887
BsuRI	GGCC	1 cut(s)	923
BtsCI	GGATG	1 cut(s)	707
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	4 cut(s)	142, 603, 613, 921
CsiI	ACCWGGT	1 cut(s)	1017
Csp6I	GTAC	2 cut(s)	589, 788
CviAII	CATG	4 cut(s)	161, 380, 454, 712
CviQI	GTAC	2 cut(s)	589, 788
DdeI	CTNAG	3 cut(s)	254, 339, 957
DpnI	GATC	5 cut(s)	52, 688, 705, 889, 941
DpnII	GATC	5 cut(s)	50, 686, 703, 887, 939
DraI	TTTAAA	1 cut(s)	562
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	3 cut(s)	142, 603, 613
EcoRII	CCWGG	2 cut(s)	648, 1017
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	4 cut(s)	164, 383, 457, 715
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FatI	CATG	4 cut(s)	160, 379, 453, 711
FokI	GGATG	1 cut(s)	694
FspBI	CTAG	1 cut(s)	417
GsaI	CCCAGC	2 cut(s)	371, 821
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	1 cut(s)	923
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	4 cut(s)	164, 383, 457, 715
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HindIII	AAGCTT	2 cut(s)	734, 989
HinfI	GANTC	3 cut(s)	293, 376, 902
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	3 cut(s)	142, 228, 613
Hpy188I	TCNGA	6 cut(s)	60, 342, 603, 862, 898, 1005
Hpy188III	TCNNGA	4 cut(s)	48, 247, 290, 494
Hpy8I	GTNNAC	3 cut(s)	142, 228, 613
HpyAV	CCTTC	7 cut(s)	106, 190, 194, 451, 510, 579, 626
HpyCH4III	ACNGT	2 cut(s)	218, 666
HpyCH4V	TGCA	7 cut(s)	179, 188, 316, 357, 413, 582, 811
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 185, 344, 363, 419, 776, 920
HpyF3I	CTNAG	3 cut(s)	254, 339, 957
Hsp92II	CATG	4 cut(s)	164, 383, 457, 715
Kzo9I	GATC	5 cut(s)	50, 686, 703, 887, 939
LmnI	GCTCC	1 cut(s)	122
LweI	GCATC	1 cut(s)	820
MabI	ACCWGGT	1 cut(s)	1017
MaeI	CTAG	1 cut(s)	417
MaeIII	GTNAC	5 cut(s)	206, 275, 430, 483, 907
MalI	GATC	5 cut(s)	52, 688, 705, 889, 941
MboI	GATC	5 cut(s)	50, 686, 703, 887, 939
MboII	GAAGA	4 cut(s)	312, 536, 911, 977
MflI	RGATCY	2 cut(s)	703, 887
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	1 cut(s)	1051
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	2 cut(s)	568, 581
MnlI	CCTC	7 cut(s)	98, 175, 504, 760, 790, 793, 1039
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	4 cut(s)	213, 561, 972, 1054
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	2 cut(s)	817, 836
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	3 cut(s)	92, 650, 1019
MvaI	CCWGG	2 cut(s)	650, 1019
MwoI	GCNNNNNNNGC	7 cut(s)	122, 185, 344, 363, 419, 776, 920
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	5 cut(s)	50, 686, 703, 887, 939
NlaIII	CATG	4 cut(s)	164, 383, 457, 715
NmuCI	GTSAC	4 cut(s)	206, 275, 430, 907
NspI	RCATGY	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	293, 902
PfoI	TCCNGGA	2 cut(s)	90, 648
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	648, 1017
PspFI	CCCAGC	2 cut(s)	367, 817
PspGI	CCWGG	2 cut(s)	648, 1017
PspPI	GGNCC	4 cut(s)	142, 603, 613, 921
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	703, 887
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	590, 789
RsaNI	GTAC	2 cut(s)	589, 788
RseI	CAYNNNNRTG	1 cut(s)	716
SaqAI	TTAA	4 cut(s)	213, 561, 972, 1054
Sau3AI	GATC	5 cut(s)	50, 686, 703, 887, 939
Sau96I	GGNCC	4 cut(s)	142, 603, 613, 921
ScaI	AGTACT	1 cut(s)	789
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	92, 650, 1019
SduI	GDGCHC	1 cut(s)	781
SexAI	ACCWGGT	1 cut(s)	1017
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	3 cut(s)	314, 699, 843
SinI	GGWCC	3 cut(s)	142, 603, 613
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	5 cut(s)	46, 373, 737, 794, 992
SmoI	CTYRAG	5 cut(s)	46, 373, 737, 794, 992
SpeI	ACTAGT	1 cut(s)	416
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	1 cut(s)	1051
SsiI	CCGC	2 cut(s)	479, 834
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	90, 648, 1017
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	218, 666
TaqI	TCGA	3 cut(s)	307, 775, 946
TasI	AATT	1 cut(s)	1051
TatI	WGTACW	1 cut(s)	787
TfiI	GAWTC	2 cut(s)	293, 902
Tru1I	TTAA	4 cut(s)	213, 561, 972, 1054
Tru9I	TTAA	4 cut(s)	213, 561, 972, 1054
TseFI	GTSAC	4 cut(s)	206, 275, 430, 907
Tsp45I	GTSAC	4 cut(s)	206, 275, 430, 907
TspDTI	ATGAA	5 cut(s)	470, 545, 674, 738, 1020
VpaK11BI	GGWCC	3 cut(s)	142, 603, 613
XceI	RCATGY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	1 cut(s)	417
ZrmI	AGTACT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.