Rroxscaffold_2G00087080

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018898
Physical Location & Seq
Forward (+)
9181266 .. 9202372
21107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087080.1

Sequence Viewer

Length: 1089 bp
ATGCAAGCACCGAAGAAACCTCTCCAAAGCTCGAAGCCTCCCCAAGCTTGTGAAGAACCATCAAGTCGCCAAATAGCCGGTCTCTTCACCTCACCGATTTCGGACAAACAAGGAAATCACTGCAAAGCTCGAAGTCGTCAAACTCGCGGAGAATCAACAAGCATCAAGCAAACGTGCCCGATTCATCCACCATCAAAGCCATACTCGCCACGTGACACCACTCGTGGTTCAAATCTGATCAAGTTCAAGCCTCTACAGCCCTTGATCATCCGTCGTCTTCAAGTCATCAACAAAGCAAAACTTCGCCAAGTTCTTCATCAAGCTCGTGGAGAATCAACAAGCACCAAACACACGTCTTTGGTTCATCCCCTACCAAAGCCAAAGAACACTCATCACGTGACACCACTCGTGGCGAAATCCGATCAAGATCAAGCTTCTACAGCCCTTGGTCAATCGTCTTCCTCAAATCGTCAACATAGCAAGAAGCTCACACTACAACCGTTCGATTCAAGATCAAGTGCTCGCCACCCTTGGATCAAATCAACGTCAAAGATTGAATCGAGAGGAGAATTTTGTGAAAGAGGGTCTACGAGAGATTCCCGACAACCACTGTTATTCACTTATTCCTTTACTTTCCCCAATTACTCCCACCAAACCCACAATTGCGTGCTCTTCTTAGCTCCTTCCAATTCAACACGACAACCCATTGATTCCCACCATCTTGTATATCCAACTGTCTTATCTCACAAGATTGTACTTTCGTTATTGTTGTTGAATGAAACTGATTGTGGTTCATATATTTCATGTGATTACGAAAATGAATCGAAGCTGTGTTTATGTACACGGGGGGCATTTGAAATTGGTCTGAAAAGAGGAAAATTGTACTTGGAATCAGCTTCATCAAAATGGAGGGAGTTCAAGTCCCGGCTTACAACGCATTACATTATGCCTTACTTGGATGACCACGAATCCTTAAATTTTCCTCCGGATGATTATAGATTCATCAACAAAGATCATTGGACCCAATTTGTGGCTGAACGGACAAACCCAAAATTTCTTGTAAGTTTTACATTAAGATTGTTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

362

Amino Acids

41.22

Weight (kDa)

9.75

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018898)

Species Orthologous Gene IDs
malus_domestica MD02G1101600.v1.1 MD02G1102000.v1.1
pyrus_communis pycom02g07970
rosa_multiflora Rmu_sc0010835.1_g000003 Rmu_sc0021237.1_g000001
rosa_roxburghii Rroxscaffold_2G00087080 Rroxscaffold_3G00267430 Rroxscaffold_6G00414250
rosa_wichuraiana Rw7G021860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1030
AccI GTMKAC 1 cut(s) 587
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 985
AciI CCGC 1 cut(s) 147
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 3 cut(s) 569, 976, 1052
AcvI CACGTG 2 cut(s) 212, 397
AfaI GTAC 3 cut(s) 756, 841, 884
AfiI CCNNNNNNNGG 1 cut(s) 1030
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 9 cut(s) 231, 247, 281, 510, 557, 693, 775, 857, 919
AjiI CACGTC 1 cut(s) 354
AluBI AGCT 9 cut(s) 30, 47, 128, 323, 434, 487, 680, 829, 896
AluI AGCT 9 cut(s) 30, 47, 128, 323, 434, 487, 680, 829, 896
Alw21I GWGCWC 2 cut(s) 523, 672
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 985
ApoI RAATTY 3 cut(s) 569, 976, 1052
ArsI GACNNNNNNTTYG 2 cut(s) 64, 96
AspS9I GGNCC 1 cut(s) 1020
AsuC2I CCSGG 1 cut(s) 925
AsuHPI GGTGA 2 cut(s) 79, 84
AvaII GGWCC 1 cut(s) 1020
BaeGI GKGCMC 1 cut(s) 179
BauI CACGAG 3 cut(s) 222, 324, 407
BbrPI CACGTG 2 cut(s) 212, 397
BbsI GAAGAC 2 cut(s) 269, 450
Bbv12I GWGCWC 2 cut(s) 523, 672
BccI CCATC 3 cut(s) 67, 199, 726
BclI TGATCA 2 cut(s) 237, 264
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 254, 438
Bme1390I CCNGG 1 cut(s) 925
Bme18I GGWCC 1 cut(s) 1020
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 1020
BmiI GGNNCC 1 cut(s) 1022
BmrFI CCNGG 1 cut(s) 925
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 2 cut(s) 269, 450
BpuMI CCSGG 1 cut(s) 925
BsaAI YACGTR 2 cut(s) 212, 397
BsaBI GATNNNNATC 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 445, 530
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 905, 935
Bsc4I CCNNNNNNNGG 1 cut(s) 1030
Bse118I RCCGGY 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 426
BseAI TCCGGA 1 cut(s) 985
BseDI CCNNGG 2 cut(s) 445, 530
BseGI GGATG 5 cut(s) 184, 267, 364, 964, 994
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 1030
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 523, 672
BsiSI CCGG 3 cut(s) 78, 925, 986
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 1 cut(s) 1030
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 907
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 3 cut(s) 179, 523, 672
Bsp13I TCCGGA 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 839
Bsp143I GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
BspACI CCGC 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 985
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 1022
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 839
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 445, 530
BssMI GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
BssSI CACGAG 3 cut(s) 222, 324, 407
BssT1I CCWWGG 2 cut(s) 445, 530
Bst2BI CACGAG 3 cut(s) 222, 324, 407
Bst4CI ACNGT 3 cut(s) 501, 612, 736
Bst6I CTCTTC 2 cut(s) 89, 677
BstAUI TGTACA 1 cut(s) 839
BstBAI YACGTR 2 cut(s) 212, 397
BstC8I GCNNGC 3 cut(s) 6, 523, 668
BstDEI CTNAG 1 cut(s) 676
BstF5I GGATG 5 cut(s) 184, 267, 364, 964, 994
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 7 cut(s) 240, 267, 424, 430, 515, 537, 1015
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 205, 256, 440, 934
BstSCI CCNGG 1 cut(s) 923
BstSFI CTRYAG 2 cut(s) 254, 438
BstSLI GKGCMC 1 cut(s) 179
BstUI CGCG 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 269, 450
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 5 cut(s) 184, 267, 364, 964, 994
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 608
Cac8I GCNNGC 3 cut(s) 6, 523, 668
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 1020
Csp6I GTAC 3 cut(s) 755, 840, 883
CviAII CATG 1 cut(s) 804
CviQI GTAC 3 cut(s) 755, 840, 883
DdeI CTNAG 1 cut(s) 676
DpnI GATC 7 cut(s) 239, 266, 423, 429, 514, 536, 1014
DpnII GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
Eam1104I CTCTTC 2 cut(s) 89, 677
EarI CTCTTC 2 cut(s) 89, 677
Eco130I CCWWGG 2 cut(s) 445, 530
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 1020
Eco72I CACGTG 2 cut(s) 212, 397
EcoT14I CCWWGG 2 cut(s) 445, 530
ErhI CCWWGG 2 cut(s) 445, 530
FaeI CATG 1 cut(s) 807
FaiI YATR 9 cut(s) 202, 477, 727, 796, 798, 805, 838, 947, 996
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 907
FatI CATG 1 cut(s) 803
FbaI TGATCA 2 cut(s) 237, 264
FblI GTMKAC 1 cut(s) 587
FokI GGATG 5 cut(s) 171, 254, 351, 971, 1001
HapII CCGG 3 cut(s) 78, 925, 986
Hin1II CATG 1 cut(s) 807
HincII GTYRAC 1 cut(s) 473
HindII GTYRAC 1 cut(s) 473
HindIII AAGCTT 2 cut(s) 45, 432
HpaII CCGG 3 cut(s) 78, 925, 986
HphI GGTGA 2 cut(s) 79, 84
Hpy166II GTNNAC 3 cut(s) 473, 588, 842
Hpy188I TCNGA 4 cut(s) 103, 237, 421, 867
Hpy188III TCNNGA 5 cut(s) 425, 510, 561, 600, 986
Hpy8I GTNNAC 3 cut(s) 473, 588, 842
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 693
HpyCH4III ACNGT 3 cut(s) 501, 612, 736
HpyCH4IV ACGT 5 cut(s) 173, 211, 353, 396, 545
HpyCH4V TGCA 2 cut(s) 4, 123
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 256, 440, 934
HpyF3I CTNAG 1 cut(s) 676
HpySE526I ACGT 5 cut(s) 173, 211, 353, 396, 545
Hsp92II CATG 1 cut(s) 807
Kpn2I TCCGGA 1 cut(s) 985
Ksp22I TGATCA 2 cut(s) 237, 264
Kzo9I GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
LguI GCTCTTC 1 cut(s) 677
LmnI GCTCC 1 cut(s) 685
LpnPI CCDG 3 cut(s) 91, 938, 999
LweI GCATC 1 cut(s) 171
MaeII ACGT 5 cut(s) 173, 211, 353, 396, 545
MaeIII GTNAC 2 cut(s) 212, 397
MalI GATC 7 cut(s) 239, 266, 423, 429, 514, 536, 1014
MboI GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
MboII GAAGA 7 cut(s) 25, 65, 76, 269, 305, 450, 664
MfeI CAATTG 1 cut(s) 661
MhlI GDGCHC 3 cut(s) 179, 523, 672
MluCI AATT 9 cut(s) 569, 640, 661, 688, 858, 878, 976, 1025, 1052
MmeI TCCRAC 1 cut(s) 755
MroI TCCGGA 1 cut(s) 985
MseI TTAA 3 cut(s) 974, 1073, 1087
MslI CAYNNNNRTG 1 cut(s) 904
MspI CCGG 3 cut(s) 78, 925, 986
MspR9I CCNGG 1 cut(s) 925
MunI CAATTG 1 cut(s) 661
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 205, 256, 440, 934
NciI CCSGG 1 cut(s) 925
NdeII GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
NlaIII CATG 1 cut(s) 807
NlaIV GGNNCC 1 cut(s) 1022
NmuCI GTSAC 2 cut(s) 212, 397
PciSI GCTCTTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 1030
PmaCI CACGTG 2 cut(s) 212, 397
PmlI CACGTG 2 cut(s) 212, 397
Ppu21I YACGTR 2 cut(s) 212, 397
PspCI CACGTG 2 cut(s) 212, 397
PspN4I GGNNCC 1 cut(s) 1022
PspPI GGNCC 1 cut(s) 1020
RsaI GTAC 3 cut(s) 756, 841, 884
RsaNI GTAC 3 cut(s) 755, 840, 883
RseI CAYNNNNRTG 1 cut(s) 904
SapI GCTCTTC 1 cut(s) 677
SaqAI TTAA 3 cut(s) 974, 1073, 1087
Sau3AI GATC 7 cut(s) 237, 264, 421, 427, 512, 534, 1012
Sau96I GGNCC 1 cut(s) 1020
ScrFI CCNGG 1 cut(s) 925
SduI GDGCHC 3 cut(s) 179, 523, 672
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 2 cut(s) 254, 438
SinI GGWCC 1 cut(s) 1020
SmiMI CAYNNNNRTG 1 cut(s) 904
Sse9I AATT 9 cut(s) 569, 640, 661, 688, 858, 878, 976, 1025, 1052
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 923
StyI CCWWGG 2 cut(s) 445, 530
TaaI ACNGT 3 cut(s) 501, 612, 736
TaiI ACGT 5 cut(s) 176, 214, 356, 399, 548
TaqI TCGA 5 cut(s) 32, 130, 504, 560, 824
TasI AATT 9 cut(s) 569, 640, 661, 688, 858, 878, 976, 1025, 1052
TatI WGTACW 3 cut(s) 754, 839, 882
Tru1I TTAA 3 cut(s) 974, 1073, 1087
Tru9I TTAA 3 cut(s) 974, 1073, 1087
TscAI CASTG 2 cut(s) 125, 615
TseFI GTSAC 2 cut(s) 212, 397
Tsp45I GTSAC 2 cut(s) 212, 397
TspDTI ATGAA 9 cut(s) 173, 305, 353, 783, 792, 792, 834, 888, 991
TspGWI ACGGA 2 cut(s) 260, 1054
TspRI CASTG 2 cut(s) 125, 615
Van91I CCANNNNNTGG 1 cut(s) 1030
VpaK11BI GGWCC 1 cut(s) 1020
XapI RAATTY 3 cut(s) 569, 976, 1052
XmiI GTMKAC 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.