Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010835.1

Orthogroup ID

OG0018898

Physical Location & Seq

Genomic Coordinates Reverse (-)

9104 .. 10292

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010835.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgaagttctccgccatagagatatataatgaagctgtcggagatcttcttagctccgagaatgctcaacttaggctgctagatgatccagagaattttgttgatcttgtgggcagcgagcgtgtcgctcaggcattatcagctggtgcaagattgaaagaaggtactaaagcttggactacatttgatagcaaagagccaaagacagtaatttcgctcaaaagttcgggtgatgggccaagtggggggataaagatggatgacgatgtagaagaagaatatcatggtcatggtgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009506 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0035371 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1990752

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

99

Amino Acids

10.64

Weight (kDa)

4.51

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018898)

Species	Orthologous Gene IDs
malus_domestica	MD02G1101600.v1.1 MD02G1102000.v1.1
pyrus_communis	pycom02g07970
rosa_multiflora	Rmu_sc0010835.1_g000003 Rmu_sc0021237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087080 Rroxscaffold_3G00267430 Rroxscaffold_6G00414250
rosa_wichuraiana	Rw7G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	4 cut(s)	35, 54, 143, 173
AluI	AGCT	4 cut(s)	35, 54, 143, 173
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	76, 114
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	63, 126
BccI	CCATC	2 cut(s)	227, 250
BfaI	CTAG	1 cut(s)	80
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	77, 115
BlsI	GCNGC	2 cut(s)	78, 116
BmgT120I	GGNCC	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	63, 126
BshFI	GGCC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	43, 85, 103
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	80
BssMI	GATC	3 cut(s)	43, 85, 103
Bst4CI	ACNGT	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	50, 71, 129
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	46, 88, 106
BstMBI	GATC	3 cut(s)	43, 85, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	63, 126
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	284, 290
CviJI	RGCY	7 cut(s)	35, 54, 76, 143, 173, 199, 238
CviKI_1	RGCY	7 cut(s)	35, 54, 76, 143, 173, 199, 238
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	50, 71, 129
DpnI	GATC	3 cut(s)	45, 87, 105
DpnII	GATC	3 cut(s)	43, 85, 103
FaeI	CATG	2 cut(s)	287, 293
FaiI	YATR	6 cut(s)	17, 25, 27, 285, 291, 298
FatI	CATG	2 cut(s)	283, 289
Fnu4HI	GCNGC	2 cut(s)	77, 115
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	77, 115
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	2 cut(s)	77, 115
HaeIII	GGCC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	287, 293
HindIII	AAGCTT	1 cut(s)	171
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	41, 58
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	149, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	3 cut(s)	50, 71, 129
Hsp92II	CATG	2 cut(s)	287, 293
Kzo9I	GATC	3 cut(s)	43, 85, 103
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	102, 116, 129
Lsp1109I	GCAGC	2 cut(s)	63, 126
MaeI	CTAG	1 cut(s)	80
MalI	GATC	3 cut(s)	45, 87, 105
MboI	GATC	3 cut(s)	43, 85, 103
MboII	GAAGA	3 cut(s)	38, 284, 287
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	2 cut(s)	94, 210
MmeI	TCCRAC	1 cut(s)	19
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	3 cut(s)	43, 85, 103
NlaIII	CATG	2 cut(s)	287, 293
PctI	GAATGC	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	78, 116
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	2 cut(s)	77, 115
Sau3AI	GATC	3 cut(s)	43, 85, 103
Sau96I	GGNCC	1 cut(s)	236
SetI	ASST	5 cut(s)	37, 56, 145, 166, 175
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	94, 210
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	208
TasI	AATT	2 cut(s)	94, 210
TseI	GCWGC	2 cut(s)	76, 114
TspDTI	ATGAA	2 cut(s)	17, 45
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.