Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0018898

Physical Location & Seq

Genomic Coordinates Reverse (-)

36514713 .. 36519522

Gene Structure 4810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATGCAGCATGGGAAGAAATGGACACATACCTTCGAGATTCCAAGCTAGCACACATACTGCAAAATTCTTTGGGAGGAAACGCTAGGACAGCCATCATTTGCACCATGAGCCCTGCACGAAGTCATGTTGAGCTATCAAACAACACCCTGTTCTTTGCAAGTTGTTCAAAAGAGGTTACTACTAATGCAAAGGTCAATGTGCCATATGTCTCTTCCAACGAAGCCCTATCAAATTCCGATGAGGAGGAACCGATCAATGATGAAGAGGACGAGGAAGAGCTAGAGGTCTTCGCTCGCTCATCCGACTCCGACGACGAAGACGTCGCCGAGGACAACTCCCATAGCTCGATGATGAGGCCGGGTCGGCCAAGAAAGATGATGACTTTGAAGAAGAGCTCCCAAATAGCCGATCTCTTCACCTCACCGACTTTAGACAAACAAGAGAAATCACCTGCAAGCTCGAAGTTGTGGAGAATCAACAAGCACCAAGCAAATGTGCCGATTCATCAGCCATCAAAGCCATCCTCGCCACGTGACACCTCTCGTGGTTCATATCTGATCAAGATCAAGCCTCTTCAGCCCTTGATCATCCGTTGTCTTCAAGTCATCAACAAAGCAAAGCTTCGCCAAGTTCTTCATCAAGCTCGTGGAGAATCAACAAGCACTAAGCACACGTGCCGATTCATCCACCATCAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

234

Amino Acids

26.32

Weight (kDa)

6.51

Isoelectric Point (pI)

63.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	13 - 60	9e-12	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018898)

Species	Orthologous Gene IDs
malus_domestica	MD02G1101600.v1.1 MD02G1102000.v1.1
pyrus_communis	pycom02g07970
rosa_multiflora	Rmu_sc0010835.1_g000003 Rmu_sc0021237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087080 Rroxscaffold_3G00267430 Rroxscaffold_6G00414250
rosa_wichuraiana	Rw7G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
AasI	GACNNNNNNGTC	1 cut(s)	323
AatII	GACGTC	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	67, 235
AcuI	CTGAAG	1 cut(s)	563
AcvI	CACGTG	2 cut(s)	536, 678
AcyI	GRCGYC	1 cut(s)	324
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	3 cut(s)	171, 391, 605
AluBI	AGCT	9 cut(s)	49, 136, 283, 348, 399, 462, 625, 647, 702
AluI	AGCT	9 cut(s)	49, 136, 283, 348, 399, 462, 625, 647, 702
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	359, 368
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	67, 235
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	3 cut(s)	412, 417, 444
AsuNHI	GCTAGC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	116, 401
BauI	CACGAG	2 cut(s)	546, 648
BbrPI	CACGTG	2 cut(s)	536, 678
BbsI	GAAGAC	3 cut(s)	283, 327, 593
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	4 cut(s)	104, 523, 532, 702
BclI	TGATCA	2 cut(s)	561, 588
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	50, 87, 284
BfuAI	ACCTGC	1 cut(s)	463
BglI	GCCNNNNNGGC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	363
BmtI	GCTAGC	1 cut(s)	53
BpiI	GAAGAC	3 cut(s)	283, 327, 593
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuMI	CCSGG	1 cut(s)	363
BsaAI	YACGTR	2 cut(s)	536, 678
BsaBI	GATNNNNATC	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	5 cut(s)	10, 302, 524, 591, 687
BseJI	GATNNNNATC	1 cut(s)	566
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	361, 370
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	361, 370
Bsp1286I	GDGCHC	2 cut(s)	116, 401
Bsp143I	GATC	5 cut(s)	255, 412, 561, 567, 588
BspANI	GGCC	2 cut(s)	361, 370
BspLI	GGNNCC	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	463
BspOI	GCTAGC	1 cut(s)	53
BspQI	GCTCTTC	2 cut(s)	273, 389
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	5 cut(s)	255, 412, 561, 567, 588
BssNI	GRCGYC	1 cut(s)	324
BssSI	CACGAG	2 cut(s)	546, 648
Bst2BI	CACGAG	2 cut(s)	546, 648
Bst6I	CTCTTC	6 cut(s)	220, 261, 273, 389, 422, 582
BstACI	GRCGYC	1 cut(s)	324
BstBAI	YACGTR	2 cut(s)	536, 678
BstC8I	GCNNGC	3 cut(s)	51, 298, 460
BstDEI	CTNAG	1 cut(s)	669
BstF5I	GGATG	5 cut(s)	10, 302, 524, 591, 687
BstKTI	GATC	5 cut(s)	258, 415, 564, 570, 591
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	5 cut(s)	255, 412, 561, 567, 588
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 111, 367, 520, 529, 580
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	3 cut(s)	283, 327, 593
BsuRI	GGCC	2 cut(s)	361, 370
BtsCI	GGATG	5 cut(s)	10, 302, 524, 591, 687
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	51, 298, 460
CviAII	CATG	3 cut(s)	12, 109, 128
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	5 cut(s)	257, 414, 563, 569, 590
DpnII	GATC	5 cut(s)	255, 412, 561, 567, 588
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	6 cut(s)	220, 261, 273, 389, 422, 582
EarI	CTCTTC	6 cut(s)	220, 261, 273, 389, 422, 582
Ecl136II	GAGCTC	1 cut(s)	399
Eco24I	GRGCYC	2 cut(s)	116, 401
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	563
Eco72I	CACGTG	2 cut(s)	536, 678
EcoICRI	GAGCTC	1 cut(s)	399
EcoT38I	GRGCYC	2 cut(s)	116, 401
FaeI	CATG	3 cut(s)	15, 112, 131
FaiI	YATR	9 cut(s)	13, 31, 59, 110, 129, 208, 210, 345, 556
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	3 cut(s)	11, 108, 127
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	2 cut(s)	561, 588
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	5 cut(s)	17, 289, 511, 578, 674
FriOI	GRGCYC	2 cut(s)	116, 401
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	3 cut(s)	50, 87, 284
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	361, 370
HapII	CCGG	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	15, 112, 131
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	6 cut(s)	41, 308, 477, 505, 656, 684
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	412, 417, 444
Hpy188I	TCNGA	4 cut(s)	241, 307, 313, 561
Hpy188III	TCNNGA	2 cut(s)	38, 565
Hpy99I	CGWCG	3 cut(s)	317, 320, 329
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	3 cut(s)	324, 535, 677
HpyCH4V	TGCA	7 cut(s)	8, 64, 105, 119, 161, 191, 458
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 111, 367, 520, 529, 580
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	3 cut(s)	324, 535, 677
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	15, 112, 131
Ksp22I	TGATCA	2 cut(s)	561, 588
Kzo9I	GATC	5 cut(s)	255, 412, 561, 567, 588
LguI	GCTCTTC	2 cut(s)	273, 389
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	4 cut(s)	129, 164, 375, 468
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	3 cut(s)	50, 87, 284
MaeII	ACGT	3 cut(s)	324, 535, 677
MaeIII	GTNAC	2 cut(s)	178, 536
MalI	GATC	5 cut(s)	257, 414, 563, 569, 590
MboI	GATC	5 cut(s)	255, 412, 561, 567, 588
MhlI	GDGCHC	2 cut(s)	116, 401
MluCI	AATT	2 cut(s)	67, 235
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	3 cut(s)	243, 330, 336
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	6 cut(s)	92, 111, 367, 520, 529, 580
NciI	CCSGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	5 cut(s)	255, 412, 561, 567, 588
NheI	GCTAGC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	15, 112, 131
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	463
PciSI	GCTCTTC	2 cut(s)	273, 389
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	5 cut(s)	41, 477, 505, 656, 684
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	302
PmaCI	CACGTG	2 cut(s)	536, 678
PmlI	CACGTG	2 cut(s)	536, 678
PpsI	GAGTC	1 cut(s)	302
Ppu21I	YACGTR	2 cut(s)	536, 678
Psp124BI	GAGCTC	1 cut(s)	401
PspCI	CACGTG	2 cut(s)	536, 678
PspN4I	GGNNCC	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	401
SapI	GCTCTTC	2 cut(s)	273, 389
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	5 cut(s)	255, 412, 561, 567, 588
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	116, 401
SfiI	GGCCNNNNNGGCC	1 cut(s)	367
Sse9I	AATT	2 cut(s)	67, 235
SspMI	CTAG	3 cut(s)	50, 87, 284
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	3 cut(s)	327, 538, 680
TaqI	TCGA	3 cut(s)	37, 350, 464
TasI	AATT	2 cut(s)	67, 235
TfiI	GAWTC	5 cut(s)	41, 477, 505, 656, 684
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	5 cut(s)	279, 497, 543, 629, 676
TspGWI	ACGGA	1 cut(s)	584
XapI	RAATTY	2 cut(s)	67, 235
XspI	CTAG	3 cut(s)	50, 87, 284
ZraI	GACGTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.