Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0018898

Physical Location & Seq

Genomic Coordinates Forward (+)

8190568 .. 8190968

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1102000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCATAAGGGTAAAATCACCAATTTGTTAATTTTTTTCCAGACCATAGAAAGCAGCCTCCGGGAGAGTTCAGGGTCTGTGAAGGCTTTTGGAGTGAGTTTGAACCTTGTGGACCTTGCTGGAAGTGAACGTGCCTCCCAAACAAATGCAGATGGTAAAGGATTGAAGAAAGGCAGTCACATTAACCGTAGCTTGTTGACACTCACAACCGTTATCAGGAAGCTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

77

Amino Acids

8.24

Weight (kDa)

10.67

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	11 - 76	5.1e-15	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018898)

Species	Orthologous Gene IDs
malus_domestica	MD02G1101600.v1.1 MD02G1102000.v1.1
pyrus_communis	pycom02g07970
rosa_multiflora	Rmu_sc0010835.1_g000003 Rmu_sc0021237.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087080 Rroxscaffold_3G00267430 Rroxscaffold_6G00414250
rosa_wichuraiana	Rw7G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	103, 166
AluBI	AGCT	2 cut(s)	192, 223
AluI	AGCT	2 cut(s)	192, 223
AlwNI	CAGNNNCTG	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	188, 211
BstDEI	CTNAG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	112
CviJI	RGCY	4 cut(s)	57, 86, 192, 223
CviKI_1	RGCY	4 cut(s)	57, 86, 192, 223
DdeI	CTNAG	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	2 cut(s)	6, 47
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	55
HapII	CCGG	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	3 cut(s)	112, 128, 198
Hpy188III	TCNNGA	2 cut(s)	40, 217
Hpy8I	GTNNAC	3 cut(s)	112, 128, 198
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	188, 211
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	4, 149
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	130
LpnPI	CCDG	5 cut(s)	53, 57, 74, 105, 202
Lsp1109I	GCAGC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	2 cut(s)	22, 30
MnlI	CCTC	2 cut(s)	68, 145
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	29, 183
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	29, 183
SatI	GCNGC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	6 cut(s)	108, 117, 133, 194, 225, 230
SgeI	CNNG	9 cut(s)	52, 73, 74, 84, 119, 128, 132, 143, 205
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	2 cut(s)	22, 30
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	188, 211
TaiI	ACGT	1 cut(s)	133
TasI	AATT	2 cut(s)	22, 30
Tru1I	TTAA	2 cut(s)	29, 183
Tru9I	TTAA	2 cut(s)	29, 183
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.