MD02G1152000.v1.1

Cupin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012303
Physical Location & Seq
Reverse (-)
12535384 .. 12538484
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1152000.v1.1.491

Sequence Viewer

Length: 2124 bp
ATGTTCAGAAAAGCTTTCGTCTTCTTCTTCTTCTTCTTCTTCCTCCTTTCTGTTTCTGTGTCTTTGCATGCAGCAAATGCACTGAAAAATGAAGGGGAAATTGGTTCAGGCGGCGAAGGTGGTGCTCCGGCTGGGTCTCTGGTGAAGAAAGATCAACGGCGGTCGCTGGTTTCGACTGAGTACGGAGAGGTCTGGTCCGTTGATGTGAATGACGGACACAGGAAACCCTACCATATTCAGTTCATTACTTTGGAACCCAACTCACTCTTCCTTCCTGTTCTTCTGCATGCAGACATGATTTTCTATGTCAACACAGGGAGTGGGAGGTTGAGTTGGACTGATGATGATAAAATTAGGAGAGTGGATATAAAGAGAGGTGATCTCTATAGGCTCACCCCTGGCTCTGTTTTCTTTGTACAAAGTAACTTAGAGACTGAGCGCCAGAAGCTGAGAATTAATGCAATCTTTACAAGCAACTCTGATGATGACTTATATGATCCAGCAGTAGGGGCATACTCCAGCATTAGGGACCTGGTCCGAGGATTTGATCCGAAATTGCTTCGGTCAGCTTTTAAGGTCTCTGAGGAAGTGATAGAATCAATAGTAAATGGAACGGACCAATCCGCCTTTGTCCATGCAATTCCAACAAAGAAAGAAACTTTCTGGGATTTGGAGGCTCGATTCCTCAAAACGTTTCTACTAGGAAATGATGGCATTGCATTCAACAGTAAGAAGAAGGAGGAAACAACAGCATATAATATTTTTGATGAGGATCCGGATTTCAAGAATTGCAATGGTTGGAGCCTAACTGTGAACAAGAAAAGCTCCCACTTGTTAAAGGGATCAAACATTGGTTTTTTCATGGTGAATTTGACAAAGGGGTCAATGATGGGGCCTCATTGGAATCCAAGGGCAACTGAGATAACAGTAGTACTACAAGGGCACGGGATGGTTAGAGTGGTTTGTTCAAGCACCGAAGCAAATAAATCGGAGTGCAGAAACATGCGGTTTAGGGTTCATGAAGGAGATGTATTCTCTGTGCCTAGGTTCCATCCAATGGCTCAGATGTCATTTAACAATGACTCTCTTGTGTTCATGGGGTTTAGCACAACAGAAAAGAAAAACTATCCTCAGTTTTTGGCCGGAAAATACTCGGTTCTGCAGAATTTGGACAAACTAGTCTTGGCGGCGTCGTTTAATGTTACCAGCACAACCATTGATCAGCTTTTGTCTGCACAGGCTGATTCGTTTATAATAGATTGTACTTCTTGTGCTGAAGAAGAGGAGAGAGCGATGTTGGAAGAGATAGAAAAGAAAAGGGAGGAAGAGGAAGCTAAGAAGAGGGAGGAAGAGGAAAAAGAGAGACAGGAGGAAGAGAGAAAGAGGGAAGAAGAGGAAAGAGAGAGACAGGAGGAAGAGAGAGAGAAGGAGGAGGAAGCAAGTAAACGAGAAGAGGAGCAAGCGGCGAGGGAGCGAGAGGAGCAAGCGGCTAGGGAGCGAGAGGAACAAGCGGCTAGGGAGCGAGAGGAGCAAGCGGCGAGGGAGCGAGAGGAGCAAGCCGCAAGGGAACAAGAGGAGCAAGCCGCAAGAGAGAGAGAGGAGCAAGACGCAAGGGAACAAGAGGAGCAAGCCGCTAGGGAGCGAGAGGAGGAAGCGGCGAGGGAGAGAGAGGAGGAAGCCGCAAGGGAACAAGAGGAGCAAGCCGCAAGAGAGAGAGAGGAGCAAGACGCAAGGGAACAAGAGGAGCAAGCCGTAAGGGAGAGAGAGGAGCAAGCAGCAAGGGAGAGAGAAGAACAAGAAGCGGCAAGGGAGAGAGAAGAACAAGAAGCAGCAAGGGAGCGAGAAGAACAAGCAGCAAGGAGAGAAGAGGAGGGTAGGCAACAAGAAGAGGAGGGCAGGCAAGGAGGCGATGAAAGAAGACACGAGGAAGAAAGAGAGAGGGAGAGGAGGCAACAAGAGGAATGGGAAAGGCGAGAGGAAGATGCGCAGAGGGAGCAGGAAGAGGCTCGAAGACAACAACAAGAAAGGCAAGGCAGAGCAGGACAACCAGAGGAGCAAGAGGGTGGAGGCGGAGGCTTCAATGCGGATGAGGGAAGGAGGTATCTGAGTGCATTGAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

708

Amino Acids

82.29

Weight (kDa)

4.87

Isoelectric Point (pI)

69.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 252 - 406 1.8e-37 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36700
fragaria_vesca FvH4_1g13730 FvH4_1g13730 FvH4_1g13730
malus_domestica MD02G1152000.v1.1 MD15G1266400.v1.1
prunus_persica Prupe.7G151000_v2.0.a1 Prupe.7G151000_v2.0.a1
pyrus_communis pycom02g11940
rosa_chinensis RchiOBHm_Chr2g0102141
rosa_laevigata RLG00000017133
rosa_roxburghii Rroxscaffold_2G00140750
rosa_rugosa Rorug02G0104600 Rorug02G0104700
rosa_samantha Rh2AG153100 Rh2BG159000 Rh2CG158300 Rh2DG158700
rosa_wichuraiana Rw2G011950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1253
AasI GACNNNNNNGTC 2 cut(s) 880, 1178
Acc16I TGCGCA 1 cut(s) 1986
AccB7I CCANNNNNTGG 1 cut(s) 1057
AccIII TCCGGA 1 cut(s) 775
AclI AACGTT 1 cut(s) 692
AclWI GGATC 5 cut(s) 491, 542, 767, 780, 850
AcoI YGGCCR 1 cut(s) 1140
AcsI RAATTY 2 cut(s) 868, 1165
AcuI CTGAAG 1 cut(s) 1296
AcyI GRCGYC 1 cut(s) 1190
AfaI GTAC 4 cut(s) 182, 417, 933, 1264
AfiI CCNNNNNNNGG 3 cut(s) 506, 525, 1057
AgsI TTSAA 5 cut(s) 724, 784, 969, 2080, 2116
AhlI ACTAGT 1 cut(s) 1177
AjnI CCWGG 2 cut(s) 397, 531
AjuI GAANNNNNNNTTGG 4 cut(s) 84, 116, 251, 283
AluBI AGCT 6 cut(s) 14, 448, 569, 825, 1225, 1334
AluI AGCT 6 cut(s) 14, 448, 569, 825, 1225, 1334
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 5 cut(s) 141, 425, 583, 1357, 1399
AlwI GGATC 5 cut(s) 491, 542, 767, 780, 850
AlwNI CAGNNNCTG 1 cut(s) 448
Aor13HI TCCGGA 1 cut(s) 775
AoxI GGCC 2 cut(s) 893, 1140
ApeKI GCWGC 4 cut(s) 71, 1775, 1829, 1853
ApoI RAATTY 2 cut(s) 868, 1165
AseI ATTAAT 1 cut(s) 456
AspA2I CCTAGG 1 cut(s) 1043
AspLEI GCGC 2 cut(s) 441, 1987
AspS9I GGNCC 5 cut(s) 195, 529, 535, 616, 893
AsuHPI GGTGA 4 cut(s) 154, 385, 389, 877
AvaII GGWCC 4 cut(s) 195, 529, 535, 616
AvrII CCTAGG 1 cut(s) 1043
BaeGI GKGCMC 1 cut(s) 945
BamHI GGATCC 1 cut(s) 772
BauI CACGAG 1 cut(s) 1922
BbsI GAAGAC 3 cut(s) 13, 1924, 2017
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 4 cut(s) 83, 1787, 1841, 1865
BccI CCATC 4 cut(s) 704, 883, 943, 1059
BceAI ACGGC 2 cut(s) 173, 1736
BcgI CGANNNNNNTGC 4 cut(s) 104, 138, 969, 1003
BciT130I CCWGG 2 cut(s) 399, 533
BclI TGATCA 1 cut(s) 1219
BcoDI GTCTC 5 cut(s) 141, 425, 583, 1357, 1399
BcuI ACTAGT 1 cut(s) 1177
BfaI CTAG 6 cut(s) 701, 1044, 1178, 1491, 1515, 1635
BfmI CTRYAG 2 cut(s) 385, 1160
BfoI RGCGCY 1 cut(s) 442
BlnI CCTAGG 1 cut(s) 1043
BmcAI AGTACT 1 cut(s) 933
Bme1390I CCNGG 2 cut(s) 399, 533
Bme18I GGWCC 4 cut(s) 195, 529, 535, 616
BmgT120I GGNCC 5 cut(s) 195, 529, 535, 616, 893
BmiI GGNNCC 6 cut(s) 255, 530, 774, 803, 894, 1049
BmrFI CCNGG 2 cut(s) 399, 533
BmsI GCATC 1 cut(s) 1972
BpiI GAAGAC 3 cut(s) 13, 1924, 2017
BplI GAGNNNNNCTC 2 cut(s) 366, 398
BpmI CTGGAG 1 cut(s) 502
BsaBI GATNNNNATC 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 1190
BsaI GGTCTC 2 cut(s) 141, 583
BsaJI CCNNGG 4 cut(s) 397, 538, 908, 1043
BsaWI WCCGGW 1 cut(s) 775
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 506, 525, 1057
Bse3DI GCAATG 2 cut(s) 714, 799
Bse8I GATNNNNATC 1 cut(s) 771
BseAI TCCGGA 1 cut(s) 775
BseBI CCWGG 2 cut(s) 399, 533
BseDI CCNNGG 4 cut(s) 397, 538, 908, 1043
BseGI GGATG 3 cut(s) 954, 1051, 2092
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 3 cut(s) 506, 525, 1057
BseMI GCAATG 2 cut(s) 714, 799
BseMII CTCAG 8 cut(s) 168, 426, 440, 573, 909, 1076, 1145, 2096
BseSI GKGCMC 1 cut(s) 945
BseXI GCAGC 4 cut(s) 83, 1787, 1841, 1865
BseYI CCCAGC 1 cut(s) 131
BsgI GTGCAG 2 cut(s) 1015, 1218
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 895, 1142
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 3 cut(s) 128, 776, 1143
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 3 cut(s) 506, 525, 1057
BsmAI GTCTC 5 cut(s) 141, 425, 583, 1357, 1399
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 2 cut(s) 895, 1142
Bso31I GGTCTC 2 cut(s) 141, 583
Bsp1286I GDGCHC 2 cut(s) 127, 945
Bsp13I TCCGGA 1 cut(s) 775
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
BspANI GGCC 2 cut(s) 895, 1142
BspCNI CTCAG 8 cut(s) 169, 427, 441, 574, 910, 1075, 1144, 2097
BspEI TCCGGA 1 cut(s) 775
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 6 cut(s) 255, 530, 774, 803, 894, 1049
BspMAI CTGCAG 1 cut(s) 1164
BspPI GGATC 5 cut(s) 491, 542, 767, 780, 850
BspTNI GGTCTC 2 cut(s) 141, 583
BsrDI GCAATG 2 cut(s) 714, 799
BsrGI TGTACA 1 cut(s) 415
BssECI CCNNGG 4 cut(s) 397, 538, 908, 1043
BssMI GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
BssNI GRCGYC 1 cut(s) 1190
BssSI CACGAG 1 cut(s) 1922
BssT1I CCWWGG 2 cut(s) 908, 1043
Bst2BI CACGAG 1 cut(s) 1922
Bst2UI CCWGG 2 cut(s) 399, 533
Bst4CI ACNGT 3 cut(s) 728, 811, 928
BstACI GRCGYC 1 cut(s) 1190
BstAPI GCANNNNNTGC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 415
BstF5I GGATG 3 cut(s) 954, 1051, 2092
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 2 cut(s) 441, 1987
BstKTI GATC 7 cut(s) 154, 382, 499, 550, 775, 845, 1222
BstMAI GTCTC 5 cut(s) 141, 425, 583, 1357, 1399
BstMBI GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 7 cut(s) 77, 445, 509, 1480, 1528, 1552, 1993
BstNI CCWGG 2 cut(s) 399, 533
BstNSI RCATGY 3 cut(s) 71, 290, 1006
BstSCI CCNGG 2 cut(s) 397, 531
BstSFI CTRYAG 2 cut(s) 385, 1160
BstSLI GKGCMC 1 cut(s) 945
BstV1I GCAGC 4 cut(s) 83, 1787, 1841, 1865
BstV2I GAAGAC 3 cut(s) 13, 1924, 2017
BstX2I RGATCY 1 cut(s) 772
BstYI RGATCY 1 cut(s) 772
BsuRI GGCC 2 cut(s) 895, 1142
BtgZI GCGATG 2 cut(s) 1307, 1923
BtsCI GGATG 3 cut(s) 954, 1051, 2092
BtsIMutI CAGTG 1 cut(s) 80
CaiI CAGNNNCTG 1 cut(s) 448
CciI TCATGA 1 cut(s) 1018
CfoI GCGC 2 cut(s) 441, 1987
Cfr13I GGNCC 5 cut(s) 195, 529, 535, 616, 893
CseI GACGC 3 cut(s) 1179, 1616, 1736
CsiI ACCWGGT 1 cut(s) 531
Csp6I GTAC 4 cut(s) 181, 416, 932, 1263
CviAII CATG 8 cut(s) 68, 287, 295, 635, 862, 1003, 1019, 1096
CviQI GTAC 4 cut(s) 181, 416, 932, 1263
DpnI GATC 7 cut(s) 153, 381, 498, 549, 774, 844, 1221
DpnII GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
DrdI GACNNNNNNGTC 2 cut(s) 880, 1178
DseDI GACNNNNNNGTC 2 cut(s) 880, 1178
EaeI YGGCCR 1 cut(s) 1140
EciI GGCGGA 2 cut(s) 613, 2085
Eco130I CCWWGG 2 cut(s) 908, 1043
Eco31I GGTCTC 2 cut(s) 141, 583
Eco47I GGWCC 4 cut(s) 195, 529, 535, 616
Eco57I CTGAAG 1 cut(s) 1296
EcoO109I RGGNCCY 2 cut(s) 529, 893
EcoRII CCWGG 2 cut(s) 397, 531
EcoT14I CCWWGG 2 cut(s) 908, 1043
ErhI CCWWGG 2 cut(s) 908, 1043
FaeI CATG 8 cut(s) 71, 290, 298, 638, 865, 1006, 1022, 1099
FaqI GGGAC 1 cut(s) 542
FatI CATG 8 cut(s) 67, 286, 294, 634, 861, 1002, 1018, 1095
FbaI TGATCA 1 cut(s) 1219
FokI GGATG 3 cut(s) 961, 1038, 2099
FspBI CTAG 6 cut(s) 701, 1044, 1178, 1491, 1515, 1635
FspI TGCGCA 1 cut(s) 1986
GlaI GCGC 2 cut(s) 440, 1986
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 2 cut(s) 895, 1142
HapII CCGG 3 cut(s) 128, 776, 1143
HgaI GACGC 3 cut(s) 1179, 1616, 1736
HhaI GCGC 2 cut(s) 441, 1987
Hin1I GRCGYC 1 cut(s) 1190
Hin1II CATG 8 cut(s) 71, 290, 298, 638, 865, 1006, 1022, 1099
Hin6I GCGC 2 cut(s) 439, 1985
HinP1I GCGC 2 cut(s) 439, 1985
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 5 cut(s) 596, 681, 904, 1082, 1244
HpaII CCGG 3 cut(s) 128, 776, 1143
HphI GGTGA 4 cut(s) 154, 385, 389, 877
Hpy166II GTNNAC 3 cut(s) 310, 814, 1445
Hpy188I TCNGA 8 cut(s) 8, 481, 539, 552, 583, 991, 1065, 2106
Hpy188III TCNNGA 3 cut(s) 776, 784, 1019
Hpy8I GTNNAC 3 cut(s) 310, 814, 1445
Hpy99I CGWCG 1 cut(s) 1195
HpyAV CCTTC 8 cut(s) 86, 110, 281, 730, 1016, 1420, 2088, 2110
HpyCH4III ACNGT 3 cut(s) 728, 811, 928
HpyCH4IV ACGT 1 cut(s) 692
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 445, 509, 1480, 1528, 1552, 1993
HpySE526I ACGT 1 cut(s) 692
Hsp92I GRCGYC 1 cut(s) 1190
Hsp92II CATG 8 cut(s) 71, 290, 298, 638, 865, 1006, 1022, 1099
HspAI GCGC 2 cut(s) 439, 1985
Kpn2I TCCGGA 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 1219
Kzo9I GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
Lsp1109I GCAGC 4 cut(s) 83, 1787, 1841, 1865
LweI GCATC 1 cut(s) 1972
MabI ACCWGGT 1 cut(s) 531
MaeI CTAG 6 cut(s) 701, 1044, 1178, 1491, 1515, 1635
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 2 cut(s) 422, 1201
MalI GATC 7 cut(s) 153, 381, 498, 549, 774, 844, 1221
MboI GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 2 cut(s) 127, 945
MluCI AATT 8 cut(s) 99, 351, 453, 554, 639, 787, 868, 1165
MlyI GAGTC 1 cut(s) 1076
MmeI TCCRAC 4 cut(s) 314, 668, 779, 1278
MroI TCCGGA 1 cut(s) 775
MseI TTAA 6 cut(s) 456, 573, 836, 1074, 1197, 2122
MspI CCGG 3 cut(s) 128, 776, 1143
MspR9I CCNGG 2 cut(s) 399, 533
Mva1269I GAATGC 1 cut(s) 719
MvaI CCWGG 2 cut(s) 399, 533
MwoI GCNNNNNNNGC 7 cut(s) 77, 445, 509, 1480, 1528, 1552, 1993
NdeII GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
NlaIII CATG 8 cut(s) 71, 290, 298, 638, 865, 1006, 1022, 1099
NlaIV GGNNCC 6 cut(s) 255, 530, 774, 803, 894, 1049
NsbI TGCGCA 1 cut(s) 1986
NspI RCATGY 3 cut(s) 71, 290, 1006
PaeI GCATGC 2 cut(s) 71, 290
PagI TCATGA 1 cut(s) 1018
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PctI GAATGC 1 cut(s) 719
PfeI GAWTC 4 cut(s) 596, 681, 904, 1244
PflFI GACNNNGTC 1 cut(s) 533
PflMI CCANNNNNTGG 1 cut(s) 1057
PleI GAGTC 1 cut(s) 1076
PpsI GAGTC 1 cut(s) 1076
PpuMI RGGWCCY 1 cut(s) 529
PshBI ATTAAT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 1253
Psp1406I AACGTT 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 397, 531
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 397, 531
PspN4I GGNNCC 6 cut(s) 255, 530, 774, 803, 894, 1049
PspPI GGNCC 5 cut(s) 195, 529, 535, 616, 893
PspPPI RGGWCCY 1 cut(s) 529
PstI CTGCAG 1 cut(s) 1164
PstNI CAGNNNCTG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 772
PsyI GACNNNGTC 1 cut(s) 533
RsaI GTAC 4 cut(s) 182, 417, 933, 1264
RsaNI GTAC 4 cut(s) 181, 416, 932, 1263
SaqAI TTAA 6 cut(s) 456, 573, 836, 1074, 1197, 2122
Sau3AI GATC 7 cut(s) 151, 379, 496, 547, 772, 842, 1219
Sau96I GGNCC 5 cut(s) 195, 529, 535, 616, 893
ScaI AGTACT 1 cut(s) 933
SchI GAGTC 1 cut(s) 1076
ScrFI CCNGG 2 cut(s) 399, 533
SduI GDGCHC 2 cut(s) 127, 945
SexAI ACCWGGT 1 cut(s) 531
SfaNI GCATC 1 cut(s) 1972
SfcI CTRYAG 2 cut(s) 385, 1160
SinI GGWCC 4 cut(s) 195, 529, 535, 616
SpeI ACTAGT 1 cut(s) 1177
SphI GCATGC 2 cut(s) 71, 290
Sse9I AATT 8 cut(s) 99, 351, 453, 554, 639, 787, 868, 1165
SspI AATATT 1 cut(s) 760
SspMI CTAG 6 cut(s) 701, 1044, 1178, 1491, 1515, 1635
StyD4I CCNGG 2 cut(s) 397, 531
StyI CCWWGG 2 cut(s) 908, 1043
TaaI ACNGT 3 cut(s) 728, 811, 928
TaiI ACGT 1 cut(s) 695
TaqI TCGA 3 cut(s) 173, 679, 2008
TaqII GACCGA 1 cut(s) 552
TasI AATT 8 cut(s) 99, 351, 453, 554, 639, 787, 868, 1165
TatI WGTACW 3 cut(s) 415, 931, 1262
TfiI GAWTC 4 cut(s) 596, 681, 904, 1244
Tru1I TTAA 6 cut(s) 456, 573, 836, 1074, 1197, 2122
Tru9I TTAA 6 cut(s) 456, 573, 836, 1074, 1197, 2122
TscAI CASTG 1 cut(s) 87
TseI GCWGC 4 cut(s) 71, 1775, 1829, 1853
TspDTI ATGAA 7 cut(s) 105, 232, 850, 1007, 1035, 1084, 1926
TspGWI ACGGA 4 cut(s) 187, 198, 228, 629
TspRI CASTG 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 1057
VpaK11BI GGWCC 4 cut(s) 195, 529, 535, 616
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 2 cut(s) 868, 1165
XceI RCATGY 3 cut(s) 71, 290, 1006
XmaJI CCTAGG 1 cut(s) 1043
XspI CTAG 6 cut(s) 701, 1044, 1178, 1491, 1515, 1635
ZrmI AGTACT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.