RLG00000017133

Cupin

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
13184707 .. 13187873
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017133

Sequence Viewer

Length: 1941 bp
ATGTCTAACAACGATTCAAATCCACCGTTTTCACTTACTCTGTTCATCTTATTCTTCTTTCTTTCACTACCTGCCTTCTCTTCCTCTTTGAAGTCTTTGAAAAATGAGGAGGATTTTTCCGGTAGTGGTGCCGGGTATCTGGTGAGGAAAGCTCAGAGGAGGGCGTTGGTTCAGACAGAGTACGGAGAAATCTCGTCCATTGATGTCACCGATGGACGGAGAGGGCCTTACCATGTCCAGTTCATCACCATGGAACCCAACTCGCTGTTCCTTCCGGTGCTGCTACACTCTGACATGGTGTTCTATGTCCACACAGGGAGTGGGAGGTTGAATTGGGCTCATGGAAAGGATGATCAAATCAACGAGGTTCCTTTAAAGCAAGGTGATATCCATAGACTCCGCCCAGGCTCTGTCTTCTTTGTACAGAGTGATTTACAGACCGAGCGTCAGAAACTTAGAATTAATGCAATCTTTGCAAATAGCGATGATGACGTATATGACCCAACAATAGGAGCATACTCCAGTGTTAGGGACCTGGTCCGAGGCTTCGACACCCAAATCCTTCGGTCAGCTTTTCAGGTTTCTGAGGATGTGATCGAGTCGATAACAAATTCAACAGACCAATCAGCCATTATCCATGCAGTGCCAACGAAGAAAGAAACCTTTTGGGATTTGGAAGCTCGGTTCTTGAAAACCTTTATAGGAGCCAGTTATGATGGCATGGCATTAAACAAGAAGAAGCATAAGAAGAAAGAAAAATCAAAAACATATAATATTTTTGATGAGGACCCAGATTTCAAGAATTGTAACGGTTGGAGCCTCACCGTGAATGAGAGAAACTCGCCTTCATTGATTGGATCAAACATTGGTCTTTTCATGGTGAACTTGACGAAGGGTTCAATGATGGGGCCTCATTGGAATCCAAGGGCAACTGAGATAGCAGTTGTGTTACAGGGGCAAGGAATGGTCAGGGTGGTTTGTGCTAGCACAGCAAAGAGATCAGAGTGCAGAAATTTGAGGTTTAGGGTTCATGAAGGAGATGTATTTGCTGTACCTATGTTCCATCCAATGGCTCAGATGTCATATAATAATGACTCATTTGTGTTTATGGGGTTCAGCACGACAACAAGGAGAAATTATCCTCAATTTTTGGCTGGGAAATACTCGGTTCTCCAAACTTTGAACAGACAGGTCTTGGCAGTGTCTTTGAATGTTACCAACACCACAATCGATCAGCTTTTGGCTGCACAAACAGAATCAATCATACTCGACTGTACTTCTTGCGCTGAAAAAGAGGAGAAAGTAATGTTGGAAGAAATTGAAAAGGAAAGGGAGGAAGAGGAGGCTAAGAAGAGAGAGGAACAAAGGAAAAGAGAAGAGGAGCAAAGGAAGAGAGAGGAGGAGCAGAGACAGAGAGAGGAGGAGGAAGCGAGGAAGAGAGAAGAGGAAGAAGAGAGGAGAAAGAGAGAAGAGGAACAAAGGAAGAGAGAGGAGGAGCAGAGACAGAGAGAGGAGGAGGAAGCGAGGAAGAGAGAAGAGGAAGAAGAGAGGAGAAAGAGAGAAGAGGAAGAAGAGAGGAGGAAGAGAGAAGAGAAGGAAGAAGAAAAGAGGAGAAGGAGAGAAGAAGAAAGAAGAGAGGAGGAAGAACAAGAGAGGGAGAGGCAACAGGAAGAAGAAAGGAAGAGGAGAGAAGAAGGAGAAGCAGCAGAAAGGGAGCAAGAAGAGGCTAGAAGGCAAGAGGAAGAAGCAGAGAGTGAGAAAGAAGACACCAGGAGGCAACAACAAGAGGAGTACAGTAAAAGAAAAGAGAAAGAGGCCCAAACAGAGCAAGAGGAGGCTAGGAAACAACAAGAGGAAATAGAAGGAAGAACCCGACCAGAGGAGCAAGAGACGGAAGGTGACCAACGTTTTGACGGTGAAGCGGGAAAAAGAGAAATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

647

Amino Acids

76.2

Weight (kDa)

5.21

Isoelectric Point (pI)

87.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 257 - 410 1.7e-37 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012303)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 1069
AciI CCGC 2 cut(s) 400, 1922
AclI AACGTT 1 cut(s) 1906
AclWI GGATC 1 cut(s) 865
AcsI RAATTY 3 cut(s) 610, 1012, 1935
AfaI GTAC 5 cut(s) 182, 423, 1053, 1276, 1793
AfiI CCNNNNNNNGG 5 cut(s) 216, 509, 528, 1069, 1879
AhdI GACNNNNNGTC 1 cut(s) 444
AjnI CCWGG 3 cut(s) 403, 534, 1769
AjuI GAANNNNNNNTTGG 4 cut(s) 251, 283, 1292, 1324
AloI GAACNNNNNNTCC 2 cut(s) 668, 700
AluBI AGCT 4 cut(s) 152, 572, 680, 1237
AluI AGCT 4 cut(s) 152, 572, 680, 1237
Alw26I GTCTC 3 cut(s) 1402, 1495, 1883
AlwI GGATC 1 cut(s) 865
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 3 cut(s) 224, 908, 1815
ApeKI GCWGC 3 cut(s) 280, 1244, 1703
ApoI RAATTY 3 cut(s) 610, 1012, 1935
ArsI GACNNNNNNTTYG 2 cut(s) 1892, 1924
AseI ATTAAT 1 cut(s) 462
AspLEI GCGC 1 cut(s) 1286
AspS9I GGNCC 6 cut(s) 224, 532, 538, 787, 908, 1816
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 8 cut(s) 154, 199, 238, 395, 814, 892, 1910, 1928
AsuNHI GCTAGC 1 cut(s) 983
AvaII GGWCC 3 cut(s) 532, 538, 787
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 406, 1770
BbvI GCAGC 3 cut(s) 267, 1231, 1715
BccI CCATC 4 cut(s) 206, 710, 898, 1071
BciT130I CCWGG 3 cut(s) 405, 536, 1771
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 1402, 1495, 1883
BfaI CTAG 3 cut(s) 984, 1728, 1839
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 3 cut(s) 281, 1245, 1704
BlsI GCNGC 3 cut(s) 282, 1246, 1705
Bme1390I CCNGG 4 cut(s) 133, 405, 536, 1771
Bme18I GGWCC 3 cut(s) 532, 538, 787
BmeRI GACNNNNNGTC 1 cut(s) 444
BmgT120I GGNCC 6 cut(s) 224, 532, 538, 787, 908, 1816
BmiI GGNNCC 8 cut(s) 130, 255, 369, 533, 706, 789, 818, 909
BmrFI CCNGG 4 cut(s) 133, 405, 536, 1771
BmtI GCTAGC 1 cut(s) 987
BpiI GAAGAC 2 cut(s) 406, 1770
BplI GAGNNNNNCTC 4 cut(s) 136, 168, 824, 856
BpmI CTGGAG 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 1230
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 4 cut(s) 249, 403, 541, 923
BsaWI WCCGGW 2 cut(s) 119, 274
Bsc4I CCNNNNNNNGG 5 cut(s) 216, 509, 528, 1069, 1879
Bse1I ACTGG 3 cut(s) 238, 522, 708
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 3 cut(s) 405, 536, 1771
BseCI ATCGAT 1 cut(s) 1230
BseDI CCNNGG 4 cut(s) 249, 403, 541, 923
BseGI GGATG 3 cut(s) 355, 595, 1063
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 5 cut(s) 216, 509, 528, 1069, 1879
BseMII CTCAG 4 cut(s) 167, 576, 924, 1088
BseNI ACTGG 3 cut(s) 238, 522, 708
BseXI GCAGC 3 cut(s) 267, 1231, 1715
BseYI CCCAGC 1 cut(s) 1154
BsgI GTGCAG 2 cut(s) 1027, 1230
BshFI GGCC 3 cut(s) 226, 910, 1817
BshNI GGYRCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 1230
BsiSI CCGG 3 cut(s) 120, 132, 275
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 5 cut(s) 216, 509, 528, 1069, 1879
BsmAI GTCTC 3 cut(s) 1402, 1495, 1883
BsmBI CGTCTC 1 cut(s) 1883
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 3 cut(s) 226, 910, 1817
Bsp1286I GDGCHC 1 cut(s) 340
Bsp1407I TGTACA 1 cut(s) 421
Bsp143I GATC 5 cut(s) 352, 594, 857, 998, 1231
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 2 cut(s) 400, 1922
BspANI GGCC 3 cut(s) 226, 910, 1817
BspCNI CTCAG 4 cut(s) 166, 577, 925, 1087
BspDI ATCGAT 1 cut(s) 1230
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 8 cut(s) 130, 255, 369, 533, 706, 789, 818, 909
BspMI ACCTGC 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 987
BspPI GGATC 1 cut(s) 865
BspT107I GGYRCC 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 421
BsrI ACTGG 3 cut(s) 238, 522, 708
BssECI CCNNGG 4 cut(s) 249, 403, 541, 923
BssMI GATC 5 cut(s) 352, 594, 857, 998, 1231
BssT1I CCWWGG 2 cut(s) 249, 923
Bst2UI CCWGG 3 cut(s) 405, 536, 1771
Bst4CI ACNGT 6 cut(s) 27, 812, 826, 1274, 1796, 1916
BstAPI GCANNNNNTGC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 421
BstC8I GCNNGC 1 cut(s) 985
BstDEI CTNAG 6 cut(s) 153, 455, 585, 933, 1074, 1347
BstDSI CCRYGG 1 cut(s) 249
BstEII GGTNACC 1 cut(s) 1898
BstF5I GGATG 3 cut(s) 355, 595, 1063
BstHHI GCGC 1 cut(s) 1286
BstKTI GATC 5 cut(s) 355, 597, 860, 1001, 1234
BstMAI GTCTC 3 cut(s) 1402, 1495, 1883
BstMBI GATC 5 cut(s) 352, 594, 857, 998, 1231
BstMWI GCNNNNNNNGC 2 cut(s) 473, 989
BstNI CCWGG 3 cut(s) 405, 536, 1771
BstPI GGTNACC 1 cut(s) 1898
BstSCI CCNGG 4 cut(s) 131, 403, 534, 1769
BstV1I GCAGC 3 cut(s) 267, 1231, 1715
BstV2I GAAGAC 2 cut(s) 406, 1770
Bsu15I ATCGAT 1 cut(s) 1230
BsuRI GGCC 3 cut(s) 226, 910, 1817
BsuTUI ATCGAT 1 cut(s) 1230
BtgI CCRYGG 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 3 cut(s) 355, 595, 1063
BtsI GCAGTG 2 cut(s) 648, 1206
BtsIMutI CAGTG 3 cut(s) 529, 648, 1206
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 985
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 1 cut(s) 1030
CfoI GCGC 1 cut(s) 1286
Cfr13I GGNCC 6 cut(s) 224, 532, 538, 787, 908, 1816
ClaI ATCGAT 1 cut(s) 1230
CseI GACGC 1 cut(s) 434
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 5 cut(s) 181, 422, 1052, 1275, 1792
CviAII CATG 8 cut(s) 233, 250, 295, 341, 638, 721, 877, 1031
CviQI GTAC 5 cut(s) 181, 422, 1052, 1275, 1792
DdeI CTNAG 6 cut(s) 153, 455, 585, 933, 1074, 1347
DpnI GATC 5 cut(s) 354, 596, 859, 1000, 1233
DpnII GATC 5 cut(s) 352, 594, 857, 998, 1231
DraI TTTAAA 1 cut(s) 375
DriI GACNNNNNGTC 1 cut(s) 444
Eam1105I GACNNNNNGTC 1 cut(s) 444
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 249, 923
Eco24I GRGCYC 1 cut(s) 340
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 3 cut(s) 532, 538, 787
Eco91I GGTNACC 1 cut(s) 1898
EcoO109I RGGNCCY 4 cut(s) 224, 532, 787, 908
EcoO65I GGTNACC 1 cut(s) 1898
EcoRII CCWGG 3 cut(s) 403, 534, 1769
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 2 cut(s) 249, 923
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 2 cut(s) 249, 923
Esp3I CGTCTC 1 cut(s) 1883
FaeI CATG 8 cut(s) 236, 253, 298, 344, 641, 724, 880, 1034
FaqI GGGAC 1 cut(s) 545
FatI CATG 8 cut(s) 232, 249, 294, 340, 637, 720, 876, 1030
FauI CCCGC 1 cut(s) 1915
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 281, 1245, 1704
FokI GGATG 3 cut(s) 362, 602, 1050
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 3 cut(s) 281, 1245, 1704
FspBI CTAG 3 cut(s) 984, 1728, 1839
GlaI GCGC 1 cut(s) 1285
GluI GCNGC 3 cut(s) 281, 1245, 1704
GsaI CCCAGC 1 cut(s) 1158
GsuI CTGGAG 1 cut(s) 505
HaeIII GGCC 3 cut(s) 226, 910, 1817
HapII CCGG 3 cut(s) 120, 132, 275
HgaI GACGC 1 cut(s) 434
HhaI GCGC 1 cut(s) 1286
Hin1II CATG 8 cut(s) 236, 253, 298, 344, 641, 724, 880, 1034
Hin6I GCGC 1 cut(s) 1284
HinP1I GCGC 1 cut(s) 1284
HinfI GANTC 6 cut(s) 14, 396, 599, 919, 1094, 1256
HpaII CCGG 3 cut(s) 120, 132, 275
HphI GGTGA 8 cut(s) 154, 199, 238, 395, 814, 892, 1910, 1928
Hpy166II GTNNAC 2 cut(s) 310, 883
Hpy188I TCNGA 8 cut(s) 156, 174, 292, 450, 542, 586, 1003, 1077
Hpy188III TCNNGA 3 cut(s) 688, 799, 1031
Hpy8I GTNNAC 2 cut(s) 310, 883
HpyCH4III ACNGT 6 cut(s) 27, 812, 826, 1274, 1796, 1916
HpyCH4IV ACGT 2 cut(s) 492, 1906
HpyCH4V TGCA 5 cut(s) 467, 476, 641, 1008, 1247
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 989
HpyF3I CTNAG 6 cut(s) 153, 455, 585, 933, 1074, 1347
HpySE526I ACGT 2 cut(s) 492, 1906
Hsp92II CATG 8 cut(s) 236, 253, 298, 344, 641, 724, 880, 1034
HspAI GCGC 1 cut(s) 1284
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 5 cut(s) 352, 594, 857, 998, 1231
LmnI GCTCC 8 cut(s) 512, 704, 816, 1381, 1402, 1495, 1714, 1882
Lsp1109I GCAGC 3 cut(s) 267, 1231, 1715
MabI ACCWGGT 1 cut(s) 534
MaeI CTAG 3 cut(s) 984, 1728, 1839
MaeII ACGT 2 cut(s) 492, 1906
MaeIII GTNAC 5 cut(s) 205, 806, 948, 1213, 1898
MalI GATC 5 cut(s) 354, 596, 859, 1000, 1233
MboI GATC 5 cut(s) 352, 594, 857, 998, 1231
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 9 cut(s) 331, 459, 610, 802, 1012, 1135, 1145, 1317, 1935
MlyI GAGTC 3 cut(s) 390, 608, 1088
MmeI TCCRAC 2 cut(s) 794, 1290
MseI TTAA 3 cut(s) 374, 462, 728
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 3 cut(s) 120, 132, 275
MspR9I CCNGG 4 cut(s) 133, 405, 536, 1771
MvaI CCWGG 3 cut(s) 405, 536, 1771
MwoI GCNNNNNNNGC 2 cut(s) 473, 989
NciI CCSGG 1 cut(s) 133
NcoI CCATGG 1 cut(s) 249
NdeII GATC 5 cut(s) 352, 594, 857, 998, 1231
NheI GCTAGC 1 cut(s) 983
NlaIII CATG 8 cut(s) 236, 253, 298, 344, 641, 724, 880, 1034
NlaIV GGNNCC 8 cut(s) 130, 255, 369, 533, 706, 789, 818, 909
NmuCI GTSAC 2 cut(s) 205, 1898
PagI TCATGA 1 cut(s) 1030
PfeI GAWTC 3 cut(s) 14, 919, 1256
PflFI GACNNNGTC 1 cut(s) 536
PflMI CCANNNNNTGG 1 cut(s) 1069
PkrI GCNGC 3 cut(s) 282, 1246, 1705
PleI GAGTC 3 cut(s) 390, 607, 1088
PpsI GAGTC 3 cut(s) 390, 607, 1088
PpuMI RGGWCCY 2 cut(s) 532, 787
PshBI ATTAAT 1 cut(s) 462
Psp1406I AACGTT 1 cut(s) 1906
Psp5II RGGWCCY 2 cut(s) 532, 787
Psp6I CCWGG 3 cut(s) 403, 534, 1769
PspEI GGTNACC 1 cut(s) 1898
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 3 cut(s) 403, 534, 1769
PspN4I GGNNCC 8 cut(s) 130, 255, 369, 533, 706, 789, 818, 909
PspPI GGNCC 6 cut(s) 224, 532, 538, 787, 908, 1816
PspPPI RGGWCCY 2 cut(s) 532, 787
PstNI CAGNNNCTG 1 cut(s) 410
PsyI GACNNNGTC 1 cut(s) 536
RsaI GTAC 5 cut(s) 182, 423, 1053, 1276, 1793
RsaNI GTAC 5 cut(s) 181, 422, 1052, 1275, 1792
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 3 cut(s) 374, 462, 728
SatI GCNGC 3 cut(s) 281, 1245, 1704
Sau3AI GATC 5 cut(s) 352, 594, 857, 998, 1231
Sau96I GGNCC 6 cut(s) 224, 532, 538, 787, 908, 1816
SchI GAGTC 3 cut(s) 390, 608, 1088
ScrFI CCNGG 4 cut(s) 133, 405, 536, 1771
SduI GDGCHC 1 cut(s) 340
SexAI ACCWGGT 1 cut(s) 534
SinI GGWCC 3 cut(s) 532, 538, 787
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 9 cut(s) 331, 459, 610, 802, 1012, 1135, 1145, 1317, 1935
SsiI CCGC 2 cut(s) 400, 1922
SspI AATATT 1 cut(s) 775
SspMI CTAG 3 cut(s) 984, 1728, 1839
StyD4I CCNGG 4 cut(s) 131, 403, 534, 1769
StyI CCWWGG 2 cut(s) 249, 923
TaaI ACNGT 6 cut(s) 27, 812, 826, 1274, 1796, 1916
TaiI ACGT 2 cut(s) 495, 1909
TaqI TCGA 5 cut(s) 549, 597, 602, 1230, 1269
TaqII GACCGA 2 cut(s) 455, 555
TasI AATT 9 cut(s) 331, 459, 610, 802, 1012, 1135, 1145, 1317, 1935
TatI WGTACW 3 cut(s) 421, 1274, 1791
TfiI GAWTC 3 cut(s) 14, 919, 1256
Tru1I TTAA 3 cut(s) 374, 462, 728
Tru9I TTAA 3 cut(s) 374, 462, 728
TscAI CASTG 3 cut(s) 529, 648, 1206
TseFI GTSAC 2 cut(s) 205, 1898
TseI GCWGC 3 cut(s) 280, 1244, 1703
Tsp45I GTSAC 2 cut(s) 205, 1898
TspDTI ATGAA 6 cut(s) 34, 232, 837, 865, 1019, 1047
TspGWI ACGGA 3 cut(s) 198, 232, 1907
TspRI CASTG 3 cut(s) 529, 648, 1206
Tth111I GACNNNGTC 1 cut(s) 536
Van91I CCANNNNNTGG 1 cut(s) 1069
VpaK11BI GGWCC 3 cut(s) 532, 538, 787
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 3 cut(s) 610, 1012, 1935
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 3 cut(s) 984, 1728, 1839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.