Cupin
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G36700 |
| fragaria_vesca | FvH4_1g13730 FvH4_1g13730 FvH4_1g13730 |
| malus_domestica | MD02G1152000.v1.1 MD15G1266400.v1.1 |
| prunus_persica | Prupe.7G151000_v2.0.a1 Prupe.7G151000_v2.0.a1 |
| pyrus_communis | pycom02g11940 |
| rosa_chinensis | RchiOBHm_Chr2g0102141 |
| rosa_laevigata | RLG00000017133 |
| rosa_roxburghii | Rroxscaffold_2G00140750 |
| rosa_rugosa | Rorug02G0104600 Rorug02G0104700 |
| rosa_samantha | Rh2AG153100 Rh2BG159000 Rh2CG158300 Rh2DG158700 |
| rosa_wichuraiana | Rw2G011950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 889, 1187 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1066 |
| AciI | CCGC | 2 cut(s) | 337, 1196 |
| AclWI | GGATC | 2 cut(s) | 554, 859 |
| AcsI | RAATTY | 1 cut(s) | 877 |
| AcuI | CTGAAG | 1 cut(s) | 1305 |
| AcyI | GRCGYC | 1 cut(s) | 1199 |
| AdeI | CACNNNGTG | 1 cut(s) | 652 |
| AfaI | GTAC | 5 cut(s) | 291, 429, 645, 942, 1273 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 518, 1053, 1066 |
| AgsI | TTSAA | 8 cut(s) | 7, 21, 700, 736, 793, 847, 2009, 2038 |
| AjnI | CCWGG | 2 cut(s) | 409, 543 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 18, 50 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 677, 709 |
| AluBI | AGCT | 3 cut(s) | 460, 581, 813 |
| AluI | AGCT | 3 cut(s) | 460, 581, 813 |
| Alw26I | GTCTC | 4 cut(s) | 153, 595, 1729, 1906 |
| AlwI | GGATC | 2 cut(s) | 554, 859 |
| AoxI | GGCC | 4 cut(s) | 236, 407, 781, 902 |
| ApaI | GGGCCC | 2 cut(s) | 240, 785 |
| ApoI | RAATTY | 1 cut(s) | 877 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 704 |
| AspLEI | GCGC | 1 cut(s) | 453 |
| AspS9I | GGNCC | 6 cut(s) | 236, 237, 541, 781, 782, 902 |
| AsuHPI | GGTGA | 4 cut(s) | 250, 362, 401, 886 |
| AvaII | GGWCC | 1 cut(s) | 541 |
| BaeGI | GKGCMC | 3 cut(s) | 231, 240, 785 |
| BanII | GRGCYC | 2 cut(s) | 240, 785 |
| BbsI | GAAGAC | 4 cut(s) | 304, 1648, 1825, 1969 |
| BccI | CCATC | 5 cut(s) | 218, 716, 892, 952, 1068 |
| BceAI | ACGGC | 1 cut(s) | 1031 |
| BciT130I | CCWGG | 2 cut(s) | 411, 545 |
| BclI | TGATCA | 1 cut(s) | 1228 |
| BcoDI | GTCTC | 4 cut(s) | 153, 595, 1729, 1906 |
| BfaI | CTAG | 5 cut(s) | 531, 978, 1344, 1731, 1908 |
| BfmI | CTRYAG | 3 cut(s) | 141, 984, 1169 |
| BfoI | RGCGCY | 1 cut(s) | 454 |
| BglII | AGATCT | 1 cut(s) | 201 |
| BlpI | GCTNAGC | 1 cut(s) | 447 |
| BmcAI | AGTACT | 1 cut(s) | 942 |
| Bme1390I | CCNGG | 2 cut(s) | 411, 545 |
| Bme18I | GGWCC | 1 cut(s) | 541 |
| BmgT120I | GGNCC | 6 cut(s) | 236, 237, 541, 781, 782, 902 |
| BmiI | GGNNCC | 6 cut(s) | 238, 267, 542, 783, 903, 1058 |
| BmrFI | CCNGG | 2 cut(s) | 411, 545 |
| BpiI | GAAGAC | 4 cut(s) | 304, 1648, 1825, 1969 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 378, 410 |
| Bpu10I | CCTNAGC | 3 cut(s) | 121, 404, 1019 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 447 |
| BsaHI | GRCGYC | 1 cut(s) | 1199 |
| BsaI | GGTCTC | 2 cut(s) | 153, 595 |
| BsaJI | CCNNGG | 3 cut(s) | 261, 917, 1052 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 677, 707, 1076, 1106 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 518, 1053, 1066 |
| Bse1I | ACTGG | 1 cut(s) | 914 |
| Bse3DI | GCAATG | 2 cut(s) | 109, 808 |
| BseBI | CCWGG | 2 cut(s) | 411, 545 |
| BseDI | CCNNGG | 3 cut(s) | 261, 917, 1052 |
| BseGI | GGATG | 4 cut(s) | 206, 364, 963, 1060 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 518, 1053, 1066 |
| BseMI | GCAATG | 2 cut(s) | 109, 808 |
| BseMII | CTCAG | 5 cut(s) | 135, 438, 918, 1085, 1269 |
| BseNI | ACTGG | 1 cut(s) | 914 |
| BseRI | GAGGAG | 6 cut(s) | 122, 1141, 1307, 1352, 1373, 1805 |
| BseSI | GKGCMC | 3 cut(s) | 231, 240, 785 |
| BseYI | CCCAGC | 1 cut(s) | 511 |
| BsgI | GTGCAG | 1 cut(s) | 1227 |
| BshFI | GGCC | 4 cut(s) | 238, 409, 783, 904 |
| BslFI | GGGAC | 1 cut(s) | 554 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 518, 1053, 1066 |
| BsmAI | GTCTC | 4 cut(s) | 153, 595, 1729, 1906 |
| BsmFI | GGGAC | 1 cut(s) | 554 |
| BsmI | GAATGC | 1 cut(s) | 731 |
| BsnI | GGCC | 4 cut(s) | 238, 409, 783, 904 |
| Bso31I | GGTCTC | 2 cut(s) | 153, 595 |
| Bsp120I | GGGCCC | 2 cut(s) | 236, 781 |
| Bsp1286I | GDGCHC | 3 cut(s) | 231, 240, 785 |
| Bsp1407I | TGTACA | 2 cut(s) | 427, 643 |
| Bsp143I | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 447 |
| BspACI | CCGC | 2 cut(s) | 337, 1196 |
| BspANI | GGCC | 4 cut(s) | 238, 409, 783, 904 |
| BspCNI | CTCAG | 5 cut(s) | 134, 439, 919, 1084, 1268 |
| BspHI | TCATGA | 1 cut(s) | 1027 |
| BspLI | GGNNCC | 6 cut(s) | 238, 267, 542, 783, 903, 1058 |
| BspMAI | CTGCAG | 3 cut(s) | 145, 988, 1173 |
| BspPI | GGATC | 2 cut(s) | 554, 859 |
| BspTNI | GGTCTC | 2 cut(s) | 153, 595 |
| BsrDI | GCAATG | 2 cut(s) | 109, 808 |
| BsrGI | TGTACA | 2 cut(s) | 427, 643 |
| BsrI | ACTGG | 1 cut(s) | 914 |
| BssECI | CCNNGG | 3 cut(s) | 261, 917, 1052 |
| BssMI | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| BssNI | GRCGYC | 1 cut(s) | 1199 |
| BssT1I | CCWWGG | 2 cut(s) | 261, 917 |
| Bst2UI | CCWGG | 2 cut(s) | 411, 545 |
| Bst4CI | ACNGT | 3 cut(s) | 820, 1143, 1225 |
| BstACI | GRCGYC | 1 cut(s) | 1199 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 479 |
| BstAUI | TGTACA | 2 cut(s) | 427, 643 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 444 |
| BstDEI | CTNAG | 8 cut(s) | 121, 404, 447, 461, 927, 1019, 1071, 1255 |
| BstF5I | GGATG | 4 cut(s) | 206, 364, 963, 1060 |
| BstH2I | RGCGCY | 1 cut(s) | 454 |
| BstHHI | GCGC | 1 cut(s) | 453 |
| BstKTI | GATC | 7 cut(s) | 166, 204, 394, 562, 578, 854, 1231 |
| BstMAI | GTCTC | 4 cut(s) | 153, 595, 1729, 1906 |
| BstMBI | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| BstNI | CCWGG | 2 cut(s) | 411, 545 |
| BstSCI | CCNGG | 2 cut(s) | 409, 543 |
| BstSFI | CTRYAG | 3 cut(s) | 141, 984, 1169 |
| BstSLI | GKGCMC | 3 cut(s) | 231, 240, 785 |
| BstV2I | GAAGAC | 4 cut(s) | 304, 1648, 1825, 1969 |
| BstX2I | RGATCY | 1 cut(s) | 201 |
| BstYI | RGATCY | 1 cut(s) | 201 |
| BsuRI | GGCC | 4 cut(s) | 238, 409, 783, 904 |
| BtsCI | GGATG | 4 cut(s) | 206, 364, 963, 1060 |
| BtsI | GCAGTG | 4 cut(s) | 337, 657, 733, 981 |
| BtsIMutI | CAGTG | 8 cut(s) | 226, 337, 489, 657, 733, 907, 981, 1263 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 444 |
| CciI | TCATGA | 1 cut(s) | 1027 |
| CfoI | GCGC | 1 cut(s) | 453 |
| Cfr13I | GGNCC | 6 cut(s) | 236, 237, 541, 781, 782, 902 |
| CseI | GACGC | 1 cut(s) | 1188 |
| CsiI | ACCWGGT | 1 cut(s) | 543 |
| Csp6I | GTAC | 5 cut(s) | 290, 428, 644, 941, 1272 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1128, 1163 |
| CviAII | CATG | 6 cut(s) | 299, 871, 947, 1012, 1028, 1105 |
| CviQI | GTAC | 5 cut(s) | 290, 428, 644, 941, 1272 |
| DdeI | CTNAG | 8 cut(s) | 121, 404, 447, 461, 927, 1019, 1071, 1255 |
| DpnI | GATC | 7 cut(s) | 165, 203, 393, 561, 577, 853, 1230 |
| DpnII | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| DraIII | CACNNNGTG | 1 cut(s) | 652 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 889, 1187 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 889, 1187 |
| Eco130I | CCWWGG | 2 cut(s) | 261, 917 |
| Eco24I | GRGCYC | 2 cut(s) | 240, 785 |
| Eco31I | GGTCTC | 2 cut(s) | 153, 595 |
| Eco32I | GATATC | 1 cut(s) | 217 |
| Eco47I | GGWCC | 1 cut(s) | 541 |
| Eco57I | CTGAAG | 1 cut(s) | 1305 |
| EcoO109I | RGGNCCY | 5 cut(s) | 236, 237, 541, 781, 902 |
| EcoRII | CCWGG | 2 cut(s) | 409, 543 |
| EcoRV | GATATC | 1 cut(s) | 217 |
| EcoT14I | CCWWGG | 2 cut(s) | 261, 917 |
| EcoT38I | GRGCYC | 2 cut(s) | 240, 785 |
| ErhI | CCWWGG | 2 cut(s) | 261, 917 |
| FaeI | CATG | 6 cut(s) | 302, 874, 950, 1015, 1031, 1108 |
| FaqI | GGGAC | 1 cut(s) | 554 |
| FatI | CATG | 6 cut(s) | 298, 870, 946, 1011, 1027, 1104 |
| FbaI | TGATCA | 1 cut(s) | 1228 |
| FokI | GGATG | 4 cut(s) | 193, 371, 970, 1047 |
| FriOI | GRGCYC | 2 cut(s) | 240, 785 |
| FspBI | CTAG | 5 cut(s) | 531, 978, 1344, 1731, 1908 |
| GlaI | GCGC | 1 cut(s) | 452 |
| GsaI | CCCAGC | 1 cut(s) | 515 |
| HaeII | RGCGCY | 1 cut(s) | 454 |
| HaeIII | GGCC | 4 cut(s) | 238, 409, 783, 904 |
| HgaI | GACGC | 1 cut(s) | 1188 |
| HhaI | GCGC | 1 cut(s) | 453 |
| Hin1I | GRCGYC | 1 cut(s) | 1199 |
| Hin1II | CATG | 6 cut(s) | 302, 874, 950, 1015, 1031, 1108 |
| Hin6I | GCGC | 1 cut(s) | 451 |
| HinP1I | GCGC | 1 cut(s) | 451 |
| HindIII | AAGCTT | 1 cut(s) | 458 |
| HinfI | GANTC | 7 cut(s) | 465, 608, 913, 1091, 1253, 1775, 1952 |
| HphI | GGTGA | 4 cut(s) | 250, 362, 401, 886 |
| Hpy166II | GTNNAC | 3 cut(s) | 42, 646, 823 |
| Hpy188I | TCNGA | 4 cut(s) | 564, 595, 1000, 1074 |
| Hpy188III | TCNNGA | 5 cut(s) | 697, 709, 793, 1028, 2035 |
| Hpy8I | GTNNAC | 3 cut(s) | 42, 646, 823 |
| Hpy99I | CGWCG | 1 cut(s) | 1204 |
| HpyAV | CCTTC | 9 cut(s) | 55, 658, 715, 841, 1025, 1315, 1748, 1925, 2010 |
| HpyCH4III | ACNGT | 3 cut(s) | 820, 1143, 1225 |
| HpyF3I | CTNAG | 8 cut(s) | 121, 404, 447, 461, 927, 1019, 1071, 1255 |
| Hsp92I | GRCGYC | 1 cut(s) | 1199 |
| Hsp92II | CATG | 6 cut(s) | 302, 874, 950, 1015, 1031, 1108 |
| HspAI | GCGC | 1 cut(s) | 451 |
| Ksp22I | TGATCA | 1 cut(s) | 1228 |
| Kzo9I | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| LmnI | GCTCC | 5 cut(s) | 109, 521, 810, 1717, 1894 |
| MabI | ACCWGGT | 1 cut(s) | 543 |
| MaeI | CTAG | 5 cut(s) | 531, 978, 1344, 1731, 1908 |
| MaeIII | GTNAC | 2 cut(s) | 184, 434 |
| MalI | GATC | 7 cut(s) | 165, 203, 393, 561, 577, 853, 1230 |
| MboI | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| MfeI | CAATTG | 1 cut(s) | 839 |
| MflI | RGATCY | 1 cut(s) | 201 |
| MhlI | GDGCHC | 3 cut(s) | 231, 240, 785 |
| MluCI | AATT | 3 cut(s) | 839, 877, 1314 |
| MlyI | GAGTC | 4 cut(s) | 1085, 1247, 1784, 1961 |
| MmeI | TCCRAC | 2 cut(s) | 788, 1287 |
| MroXI | GAANNNNTTC | 1 cut(s) | 704 |
| MseI | TTAA | 7 cut(s) | 366, 585, 815, 1083, 1206, 2027, 2044 |
| MspR9I | CCNGG | 2 cut(s) | 411, 545 |
| MunI | CAATTG | 1 cut(s) | 839 |
| Mva1269I | GAATGC | 1 cut(s) | 731 |
| MvaI | CCWGG | 2 cut(s) | 411, 545 |
| NdeII | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| NlaIII | CATG | 6 cut(s) | 302, 874, 950, 1015, 1031, 1108 |
| NlaIV | GGNNCC | 6 cut(s) | 238, 267, 542, 783, 903, 1058 |
| NmeAIII | GCCGAG | 1 cut(s) | 1077 |
| NmuCI | GTSAC | 2 cut(s) | 184, 434 |
| PagI | TCATGA | 1 cut(s) | 1027 |
| PctI | GAATGC | 1 cut(s) | 731 |
| PdmI | GAANNNNTTC | 1 cut(s) | 704 |
| PfeI | GAWTC | 3 cut(s) | 465, 608, 913 |
| PflFI | GACNNNGTC | 1 cut(s) | 308 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1066 |
| PleI | GAGTC | 4 cut(s) | 1085, 1247, 1783, 1960 |
| PpsI | GAGTC | 4 cut(s) | 1085, 1247, 1783, 1960 |
| PpuMI | RGGWCCY | 1 cut(s) | 541 |
| Psp5II | RGGWCCY | 1 cut(s) | 541 |
| Psp6I | CCWGG | 2 cut(s) | 409, 543 |
| PspFI | CCCAGC | 1 cut(s) | 511 |
| PspGI | CCWGG | 2 cut(s) | 409, 543 |
| PspN4I | GGNNCC | 6 cut(s) | 238, 267, 542, 783, 903, 1058 |
| PspOMI | GGGCCC | 2 cut(s) | 236, 781 |
| PspPI | GGNCC | 6 cut(s) | 236, 237, 541, 781, 782, 902 |
| PspPPI | RGGWCCY | 1 cut(s) | 541 |
| PstI | CTGCAG | 3 cut(s) | 145, 988, 1173 |
| PsuI | RGATCY | 1 cut(s) | 201 |
| PsyI | GACNNNGTC | 1 cut(s) | 308 |
| RsaI | GTAC | 5 cut(s) | 291, 429, 645, 942, 1273 |
| RsaNI | GTAC | 5 cut(s) | 290, 428, 644, 941, 1272 |
| SaqAI | TTAA | 7 cut(s) | 366, 585, 815, 1083, 1206, 2027, 2044 |
| Sau3AI | GATC | 7 cut(s) | 163, 201, 391, 559, 575, 851, 1228 |
| Sau96I | GGNCC | 6 cut(s) | 236, 237, 541, 781, 782, 902 |
| ScaI | AGTACT | 1 cut(s) | 942 |
| SchI | GAGTC | 4 cut(s) | 1085, 1247, 1784, 1961 |
| ScrFI | CCNGG | 2 cut(s) | 411, 545 |
| SduI | GDGCHC | 3 cut(s) | 231, 240, 785 |
| SexAI | ACCWGGT | 1 cut(s) | 543 |
| SfcI | CTRYAG | 3 cut(s) | 141, 984, 1169 |
| SinI | GGWCC | 1 cut(s) | 541 |
| Sse9I | AATT | 3 cut(s) | 839, 877, 1314 |
| SsiI | CCGC | 2 cut(s) | 337, 1196 |
| SspI | AATATT | 2 cut(s) | 96, 769 |
| SspMI | CTAG | 5 cut(s) | 531, 978, 1344, 1731, 1908 |
| StyD4I | CCNGG | 2 cut(s) | 409, 543 |
| StyI | CCWWGG | 2 cut(s) | 261, 917 |
| TaaI | ACNGT | 3 cut(s) | 820, 1143, 1225 |
| TaqI | TCGA | 2 cut(s) | 550, 574 |
| TasI | AATT | 3 cut(s) | 839, 877, 1314 |
| TatI | WGTACW | 5 cut(s) | 289, 427, 643, 940, 1271 |
| TauI | GCSGC | 1 cut(s) | 1199 |
| TfiI | GAWTC | 3 cut(s) | 465, 608, 913 |
| Tru1I | TTAA | 7 cut(s) | 366, 585, 815, 1083, 1206, 2027, 2044 |
| Tru9I | TTAA | 7 cut(s) | 366, 585, 815, 1083, 1206, 2027, 2044 |
| TscAI | CASTG | 8 cut(s) | 226, 337, 496, 657, 733, 914, 988, 1263 |
| TseFI | GTSAC | 2 cut(s) | 184, 434 |
| Tsp45I | GTSAC | 2 cut(s) | 184, 434 |
| TspDTI | ATGAA | 9 cut(s) | 40, 52, 244, 311, 612, 859, 1016, 1044, 1093 |
| TspGWI | ACGGA | 4 cut(s) | 27, 184, 1730, 1907 |
| TspRI | CASTG | 8 cut(s) | 226, 337, 496, 657, 733, 914, 988, 1263 |
| Tth111I | GACNNNGTC | 1 cut(s) | 308 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1066 |
| VpaK11BI | GGWCC | 1 cut(s) | 541 |
| XapI | RAATTY | 1 cut(s) | 877 |
| XmnI | GAANNNNTTC | 1 cut(s) | 704 |
| XspI | CTAG | 5 cut(s) | 531, 978, 1344, 1731, 1908 |
| ZrmI | AGTACT | 1 cut(s) | 942 |