MD02G1157600.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0017221
Physical Location & Seq
Reverse (-)
13181706 .. 13185059
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1157600.v1.1.491

Sequence Viewer

Length: 1992 bp
ATGTTCTTTACTCCCAAAAATCCGACCGTTGCTTCCCGCTTCTTTCACTCTCTACACCCCACTCTCCCTCCAAAGCCCACCAATTTCGCCCACGAATTCAAAAACTCCACTCACCAAACCCTGCATCTCCTCCTTGAGCAATGCTCCTCCATGAGAGAACTCAAACAGCTCCACGCCCTAATCATCCTCCACAGCCTCACAAGCGAAAACCTCACCCTCGGAAAACTCATATCCTTCTGCTCCGTCTCCGATCCCAGAAATCTCCGCTACGCCCAGCTTGTGTTCGACCAAATTCCTGAGCCAAATAAGTTTATGTACAATAGTCTTATAAGGGGTTACTCAAATAGTAATGACCCATTTAAGGCCTTTTCACTCTACTGCCAAATGGTTGGTTCAGGTCTTTCACCAAACGAGTTCACGTTGCCCTTTGTGCTCAAGGTTTGCGTGGGACAGTCCGCATATTGGGAAGCCGTGGCTGTTCATGGCCAGGCTATTAAACTAGGAATTGAGTCTCAAGTTTGCGTGCAAAATGCCCTTATTACTGTCTATAGTGTTCGGGGGTTGATCCGGTGTGCTCAGAATGTGTTTGATGATATGTCTGAGAGGAGTCTGGTTTCATGGAATTCAATGATCGGTGGCTATGCTAGAATGGGTTCGTGCAAGGAGGCTCTGTTGTTGTTTAGGGAGATGAGAGATCTGGGGGTTGAGCCTGATAAGTTTACTTTGGTTAATTTACTCTCTGTTTGTTCACAAGCTTGTGATTTGGAGTTGGGAAGATATGTGCATCTTTTTATTGAGGTTAGTGGGATTGAAATTGACCAAATTGTGAGAAATGCTCTTCTGGATATGTATGCCAAGTGTGGGCATTTGCACTTGGCACGAAAGATTTTTGATCAAATGACTCACAAAAATGTGGTTTCCTGGACGTCAATGGTTAGAGCATACACTAAACATGGGCTCATTGAATTTGCCCAGGAGTTTTTCAACCAGATGCCACATAAAAATGTGGTTTCTTGGAATTCAATGATCTCATATTATGTACGGGAAGGCCAGTGCAGGGTGGCTTTGGATCTATTCCAGAAAATGCTTAATTCGAGTGTGGTGCCTGATGAGGCTACCTTGGTTTCTGTCCTTTCATCCTGCAGTCAAATTGGCGATTTGGTCATTGGAAGGAAAACCCATAATTACATTTGCAACAGCAATATTGCACCCAGTGTAACCCTTTTTAATTCCCTTATGGACATGTATGCAAAATGTGGTGCTGTTGAAATTGCCATGGACATCTTTATTCTGATACCAGAAAAGAATGTAGTATCATGGAACATCATTATCGGGGCCCTTGCATTGCACGGTCGCGGATCAGAATCAATCGGGATATTCGAACAGATGCAAGCAGGTAGAATCTGGCCGGATGAGATCACCTTCATCGGACTTCTTTCTGCTTGCAGTCACAGTGGTCTTCTAGACTTAGGGAGACATTACTTTGAAAAAATGAAGTCTACTTACAGAATATCACCTGAAATTGAGCACTATGCTTGCATGGTAGATCTGCTGGGGCGAGCGGGACTTTTAGAAGAAGCAATGAGGCTGGTAAGAGGAATGCCAATGAAGCCTGATGTTGTCATTTGGGGTGCTTTACTTGGTGCTTGTCGGATCCATGGAAATGTGGATTTGGGAAAGCTGATTCTAAAGCAGCTGTTGGAGTTGGAACTGCATGGTTCTGGACTTTATGTACTTCTAGCAAACATATTTGGTGAAGCGCACAGATGGGAGGATGTTAAGAACATCAGGAAACTAATAAAAGACGGTGGATCCATAAAGAGTAGAGCAGTGAGCTCGATCGAAATTGATGGCCGTGTTTACGAATTTATGGTTGATGACAAGAGACATGAAACTTCAAGCAGTATATACTCCATGCTTGATCAGTTAACAGATCATCTGAGGCGTACTGGGTATGCTCCAAGTGCGATTTTGGATATAGAAGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

664

Amino Acids

74.58

Weight (kDa)

6.66

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 101 - 148 2.1e-09 PPR repeat family
PPR PF01535 104 - 134 1.4e-06 PPR repeat
PPR_2 PF13041 203 - 249 1.9e-10 PPR repeat family
PPR PF01535 205 - 235 3.4e-09 PPR repeat
PPR PF01535 306 - 335 3.2e-06 PPR repeat
PPR_2 PF13041 334 - 382 2.1e-11 PPR repeat family
PPR PF01535 337 - 365 1.4e-06 PPR repeat
PPR_2 PF13041 435 - 483 2.2e-07 PPR repeat family
E_motif PF20431 553 - 615 6.7e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017221)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14410
malus_domestica MD02G1157600.v1.1
prunus_persica Prupe.7G146100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0103131
rosa_laevigata RLG00000017212
rosa_multiflora Rmu_sc0000388.1_g000006
rosa_roxburghii Rroxscaffold_2G00139900
rosa_rugosa Rorug02G0112000
rosa_samantha Rh2AG160800 Rh2BG167500 Rh2CG167800 Rh2DG166400
rosa_wichuraiana Rw2G012590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AatII GACGTC 1 cut(s) 929
Acc36I ACCTGC 1 cut(s) 1385
AccB1I GGYRCC 1 cut(s) 1102
AccBSI CCGCTC 1 cut(s) 1562
AccI GTMKAC 1 cut(s) 1499
AccII CGCG 1 cut(s) 1356
AciI CCGC 5 cut(s) 37, 265, 456, 1356, 1562
AclWI GGATC 8 cut(s) 245, 559, 1077, 1366, 1648, 1661, 1806, 1819
AcoI YGGCCR 3 cut(s) 484, 1406, 1852
AcsI RAATTY 6 cut(s) 95, 291, 622, 965, 1018, 1865
AcyI GRCGYC 1 cut(s) 926
AdeI CACNNNGTG 1 cut(s) 1214
AfaI GTAC 4 cut(s) 317, 1041, 1734, 1948
AfiI CCNNNNNNNGG 4 cut(s) 361, 462, 861, 1057
AflIII ACRYGT 1 cut(s) 1242
AgsI TTSAA 9 cut(s) 100, 627, 812, 965, 985, 1023, 1268, 1487, 1899
AjnI CCWGG 3 cut(s) 486, 920, 972
AluBI AGCT 6 cut(s) 169, 277, 755, 1681, 1696, 1836
AluI AGCT 6 cut(s) 169, 277, 755, 1681, 1696, 1836
Alw21I GWGCWC 4 cut(s) 435, 577, 1530, 1838
Alw26I GTCTC 4 cut(s) 250, 516, 1468, 1879
AlwI GGATC 8 cut(s) 245, 559, 1077, 1366, 1648, 1661, 1806, 1819
AoxI GGCC 6 cut(s) 363, 484, 1048, 1335, 1406, 1852
ApaI GGGCCC 1 cut(s) 1339
ApeKI GCWGC 1 cut(s) 1693
ApoI RAATTY 6 cut(s) 95, 291, 622, 965, 1018, 1865
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 1 cut(s) 1762
AspS9I GGNCC 2 cut(s) 1335, 1336
AsuHPI GGTGA 6 cut(s) 104, 205, 396, 1411, 1506, 1766
AsuII TTCGAA 1 cut(s) 1380
BaeGI GKGCMC 1 cut(s) 1339
BalI TGGCCA 1 cut(s) 486
BamHI GGATCC 2 cut(s) 1653, 1811
BanI GGYRCC 1 cut(s) 1102
BanII GRGCYC 3 cut(s) 960, 1339, 1838
BarI GAAGNNNNNNTAC 2 cut(s) 1487, 1519
BbsI GAAGAC 1 cut(s) 1451
Bbv12I GWGCWC 4 cut(s) 435, 577, 1530, 1838
BbvI GCAGC 1 cut(s) 1705
BccI CCATC 2 cut(s) 1761, 1844
BceAI ACGGC 2 cut(s) 455, 1839
BcgI CGANNNNNNTGC 4 cut(s) 1084, 1118, 1818, 1852
BciT130I CCWGG 3 cut(s) 488, 922, 974
BclI TGATCA 2 cut(s) 892, 1921
BcoDI GTCTC 4 cut(s) 250, 516, 1468, 1879
BfaI CTAG 4 cut(s) 500, 645, 1463, 1739
BfmI CTRYAG 2 cut(s) 547, 1141
BfuAI ACCTGC 1 cut(s) 1385
BglII AGATCT 2 cut(s) 694, 1546
BisI GCNGC 1 cut(s) 1694
BlsI GCNGC 1 cut(s) 1695
Bme1390I CCNGG 3 cut(s) 488, 922, 974
BmgT120I GGNCC 2 cut(s) 1335, 1336
BmiI GGNNCC 5 cut(s) 1104, 1336, 1337, 1655, 1813
BmrFI CCNGG 3 cut(s) 488, 922, 974
BmrI ACTGGG 2 cut(s) 1206, 1959
BmsI GCATC 4 cut(s) 133, 793, 981, 1377
BmuI ACTGGG 2 cut(s) 1206, 1959
BpiI GAAGAC 1 cut(s) 1451
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 820, 852
Bpu10I CCTNAGC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 1380
BpuEI CTTGAG 3 cut(s) 155, 419, 498
BsaBI GATNNNNATC 1 cut(s) 1363
BsaHI GRCGYC 1 cut(s) 926
BsaJI CCNNGG 6 cut(s) 217, 471, 972, 1119, 1275, 1657
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 656, 686
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 462, 861, 1057
Bse1I ACTGG 3 cut(s) 1051, 1212, 1954
Bse3DI GCAATG 3 cut(s) 146, 1343, 1587
Bse8I GATNNNNATC 1 cut(s) 1363
BseBI CCWGG 3 cut(s) 488, 922, 974
BseDI CCNNGG 6 cut(s) 217, 471, 972, 1119, 1275, 1657
BseGI GGATG 4 cut(s) 183, 1136, 1417, 1780
BseJI GATNNNNATC 1 cut(s) 1363
BseLI CCNNNNNNNGG 4 cut(s) 361, 462, 861, 1057
BseMI GCAATG 3 cut(s) 146, 1343, 1587
BseMII CTCAG 4 cut(s) 288, 590, 591, 1931
BseNI ACTGG 3 cut(s) 1051, 1212, 1954
BseRI GAGGAG 3 cut(s) 119, 136, 619
BseSI GKGCMC 1 cut(s) 1339
BseXI GCAGC 1 cut(s) 1705
BseYI CCCAGC 2 cut(s) 273, 1552
BsgI GTGCAG 1 cut(s) 1075
Bsh1236I CGCG 1 cut(s) 1356
Bsh1285I CGRYCG 3 cut(s) 27, 1354, 1842
BshFI GGCC 6 cut(s) 365, 486, 1050, 1337, 1408, 1854
BshNI GGYRCC 1 cut(s) 1102
BsiEI CGRYCG 3 cut(s) 27, 1354, 1842
BsiHKAI GWGCWC 4 cut(s) 435, 577, 1530, 1838
BsiSI CCGG 2 cut(s) 568, 1409
BslFI GGGAC 2 cut(s) 462, 1578
BslI CCNNNNNNNGG 4 cut(s) 361, 462, 861, 1057
BsmAI GTCTC 4 cut(s) 250, 516, 1468, 1879
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 462, 1578
BsmI GAATGC 1 cut(s) 1605
BsnI GGCC 6 cut(s) 365, 486, 1050, 1337, 1408, 1854
Bsp119I TTCGAA 1 cut(s) 1380
Bsp120I GGGCCC 1 cut(s) 1335
Bsp1286I GDGCHC 6 cut(s) 435, 577, 960, 1339, 1530, 1838
Bsp1407I TGTACA 1 cut(s) 315
Bsp19I CCATGG 2 cut(s) 1275, 1657
BspACI CCGC 5 cut(s) 37, 265, 456, 1356, 1562
BspANI GGCC 6 cut(s) 365, 486, 1050, 1337, 1408, 1854
BspCNI CTCAG 4 cut(s) 289, 589, 592, 1932
BspFNI CGCG 1 cut(s) 1356
BspLI GGNNCC 5 cut(s) 1104, 1336, 1337, 1655, 1813
BspMAI CTGCAG 1 cut(s) 1145
BspMI ACCTGC 1 cut(s) 1385
BspPI GGATC 8 cut(s) 245, 559, 1077, 1366, 1648, 1661, 1806, 1819
BspQI GCTCTTC 1 cut(s) 843
BspT104I TTCGAA 1 cut(s) 1380
BspT107I GGYRCC 1 cut(s) 1102
BsrBI CCGCTC 1 cut(s) 1562
BsrDI GCAATG 3 cut(s) 146, 1343, 1587
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 3 cut(s) 1051, 1212, 1954
BssECI CCNNGG 6 cut(s) 217, 471, 972, 1119, 1275, 1657
BssNI GRCGYC 1 cut(s) 926
BssT1I CCWWGG 3 cut(s) 1119, 1275, 1657
Bst2UI CCWGG 3 cut(s) 488, 922, 974
Bst4CI ACNGT 6 cut(s) 28, 453, 544, 1352, 1454, 1808
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 1 cut(s) 926
BstAUI TGTACA 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 1380
BstC8I GCNNGC 5 cut(s) 524, 1392, 1444, 1537, 1560
BstDEI CTNAG 5 cut(s) 297, 576, 600, 1468, 1940
BstDSI CCRYGG 3 cut(s) 471, 1275, 1657
BstF5I GGATG 4 cut(s) 183, 1136, 1417, 1780
BstFNI CGCG 1 cut(s) 1356
BstHHI GCGC 1 cut(s) 1762
BstMAI GTCTC 4 cut(s) 250, 516, 1468, 1879
BstMCI CGRYCG 3 cut(s) 27, 1354, 1842
BstMWI GCNNNNNNNGC 4 cut(s) 201, 430, 1609, 1964
BstNI CCWGG 3 cut(s) 488, 922, 974
BstNSI RCATGY 1 cut(s) 1246
BstSCI CCNGG 3 cut(s) 486, 920, 972
BstSFI CTRYAG 2 cut(s) 547, 1141
BstSLI GKGCMC 1 cut(s) 1339
BstUI CGCG 1 cut(s) 1356
BstV1I GCAGC 1 cut(s) 1705
BstV2I GAAGAC 1 cut(s) 1451
BstX2I RGATCY 5 cut(s) 694, 1069, 1546, 1653, 1811
BstXI CCANNNNNNTGG 1 cut(s) 389
BstYI RGATCY 5 cut(s) 694, 1069, 1546, 1653, 1811
BsuRI GGCC 6 cut(s) 365, 486, 1050, 1337, 1408, 1854
BtgI CCRYGG 3 cut(s) 471, 1275, 1657
BtsCI GGATG 4 cut(s) 183, 1136, 1417, 1780
BtsI GCAGTG 1 cut(s) 1836
BtsIMutI CAGTG 4 cut(s) 1058, 1219, 1459, 1836
BveI ACCTGC 1 cut(s) 1385
Cac8I GCNNGC 5 cut(s) 524, 1392, 1444, 1537, 1560
CfoI GCGC 1 cut(s) 1762
Cfr13I GGNCC 2 cut(s) 1335, 1336
Csp6I GTAC 4 cut(s) 316, 1040, 1733, 1947
CviQI GTAC 4 cut(s) 316, 1040, 1733, 1947
DdeI CTNAG 5 cut(s) 297, 576, 600, 1468, 1940
DraIII CACNNNGTG 1 cut(s) 1214
EaeI YGGCCR 3 cut(s) 484, 1406, 1852
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Ecl136II GAGCTC 1 cut(s) 1836
Eco130I CCWWGG 3 cut(s) 1119, 1275, 1657
Eco147I AGGCCT 1 cut(s) 365
Eco24I GRGCYC 3 cut(s) 960, 1339, 1838
Eco53kI GAGCTC 1 cut(s) 1836
EcoICRI GAGCTC 1 cut(s) 1836
EcoO109I RGGNCCY 2 cut(s) 1335, 1336
EcoRI GAATTC 3 cut(s) 95, 622, 1018
EcoRII CCWGG 3 cut(s) 486, 920, 972
EcoT14I CCWWGG 3 cut(s) 1119, 1275, 1657
EcoT38I GRGCYC 3 cut(s) 960, 1339, 1838
ErhI CCWWGG 3 cut(s) 1119, 1275, 1657
Esp3I CGTCTC 1 cut(s) 250
FaqI GGGAC 2 cut(s) 462, 1578
FauI CCCGC 2 cut(s) 44, 1555
FbaI TGATCA 2 cut(s) 892, 1921
FblI GTMKAC 1 cut(s) 1499
Fnu4HI GCNGC 1 cut(s) 1694
FokI GGATG 4 cut(s) 170, 1123, 1424, 1787
FriOI GRGCYC 3 cut(s) 960, 1339, 1838
Fsp4HI GCNGC 1 cut(s) 1694
FspBI CTAG 4 cut(s) 500, 645, 1463, 1739
GlaI GCGC 1 cut(s) 1761
GluI GCNGC 1 cut(s) 1694
GsaI CCCAGC 2 cut(s) 277, 1556
HaeIII GGCC 6 cut(s) 365, 486, 1050, 1337, 1408, 1854
HapII CCGG 2 cut(s) 568, 1409
HhaI GCGC 1 cut(s) 1762
Hin1I GRCGYC 1 cut(s) 926
Hin6I GCGC 1 cut(s) 1760
HinP1I GCGC 1 cut(s) 1760
HincII GTYRAC 1 cut(s) 1929
HindII GTYRAC 1 cut(s) 1929
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 7 cut(s) 509, 607, 901, 1364, 1401, 1684, 1985
HpaI GTTAAC 1 cut(s) 1929
HpaII CCGG 2 cut(s) 568, 1409
HphI GGTGA 6 cut(s) 104, 205, 396, 1411, 1506, 1766
Hpy166II GTNNAC 6 cut(s) 417, 720, 749, 1500, 1861, 1929
Hpy188III TCNNGA 7 cut(s) 296, 842, 1078, 1372, 1463, 1722, 1789
Hpy8I GTNNAC 6 cut(s) 417, 720, 749, 1500, 1861, 1929
HpyAV CCTTC 4 cut(s) 244, 1040, 1164, 1432
HpyCH4III ACNGT 6 cut(s) 28, 453, 544, 1352, 1454, 1808
HpyCH4IV ACGT 2 cut(s) 419, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 430, 1609, 1964
HpyF3I CTNAG 5 cut(s) 297, 576, 600, 1468, 1940
HpySE526I ACGT 2 cut(s) 419, 926
Hsp92I GRCGYC 1 cut(s) 926
HspAI GCGC 1 cut(s) 1760
Ksp22I TGATCA 2 cut(s) 892, 1921
KspAI GTTAAC 1 cut(s) 1929
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 4 cut(s) 149, 174, 245, 1963
Lsp1109I GCAGC 1 cut(s) 1705
LweI GCATC 4 cut(s) 133, 793, 981, 1377
MaeI CTAG 4 cut(s) 500, 645, 1463, 1739
MaeII ACGT 2 cut(s) 419, 926
MaeIII GTNAC 3 cut(s) 335, 1216, 1448
MbiI CCGCTC 1 cut(s) 1562
MboII GAAGA 4 cut(s) 786, 830, 1451, 1586
MflI RGATCY 5 cut(s) 694, 1069, 1546, 1653, 1811
MhlI GDGCHC 6 cut(s) 435, 577, 960, 1339, 1530, 1838
MlsI TGGCCA 1 cut(s) 486
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 3 cut(s) 518, 616, 895
MmeI TCCRAC 4 cut(s) 47, 1631, 1680, 1686
Mox20I TGGCCA 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 652
MscI TGGCCA 1 cut(s) 486
MseI TTAA 7 cut(s) 360, 495, 729, 1089, 1227, 1779, 1928
MslI CAYNNNNRTG 3 cut(s) 909, 1002, 1662
Msp20I TGGCCA 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 1696
MspI CCGG 2 cut(s) 568, 1409
MspR9I CCNGG 3 cut(s) 488, 922, 974
Mva1269I GAATGC 1 cut(s) 1605
MvaI CCWGG 3 cut(s) 488, 922, 974
MvnI CGCG 1 cut(s) 1356
MwoI GCNNNNNNNGC 4 cut(s) 201, 430, 1609, 1964
NcoI CCATGG 2 cut(s) 1275, 1657
NlaIV GGNNCC 5 cut(s) 1104, 1336, 1337, 1655, 1813
NmuCI GTSAC 1 cut(s) 1448
NspI RCATGY 1 cut(s) 1246
NspV TTCGAA 1 cut(s) 1380
PceI AGGCCT 1 cut(s) 365
PciI ACATGT 1 cut(s) 1242
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 1 cut(s) 1377
PctI GAATGC 1 cut(s) 1605
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 4 cut(s) 1364, 1401, 1684, 1985
PfoI TCCNGGA 1 cut(s) 920
PkrI GCNGC 1 cut(s) 1695
Ple19I CGATCG 1 cut(s) 1842
PleI GAGTC 3 cut(s) 517, 615, 895
PpsI GAGTC 3 cut(s) 517, 615, 895
PscI ACATGT 1 cut(s) 1242
PsiI TTATAA 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 1838
Psp6I CCWGG 3 cut(s) 486, 920, 972
PspFI CCCAGC 2 cut(s) 273, 1552
PspGI CCWGG 3 cut(s) 486, 920, 972
PspN4I GGNNCC 5 cut(s) 1104, 1336, 1337, 1655, 1813
PspOMI GGGCCC 1 cut(s) 1335
PspPI GGNCC 2 cut(s) 1335, 1336
PstI CTGCAG 1 cut(s) 1145
PsuI RGATCY 5 cut(s) 694, 1069, 1546, 1653, 1811
PvuI CGATCG 1 cut(s) 1842
PvuII CAGCTG 1 cut(s) 1696
RsaI GTAC 4 cut(s) 317, 1041, 1734, 1948
RsaNI GTAC 4 cut(s) 316, 1040, 1733, 1947
RseI CAYNNNNRTG 3 cut(s) 909, 1002, 1662
SacI GAGCTC 1 cut(s) 1838
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 7 cut(s) 360, 495, 729, 1089, 1227, 1779, 1928
SatI GCNGC 1 cut(s) 1694
Sau96I GGNCC 2 cut(s) 1335, 1336
SchI GAGTC 3 cut(s) 518, 616, 895
ScrFI CCNGG 3 cut(s) 488, 922, 974
SduI GDGCHC 6 cut(s) 435, 577, 960, 1339, 1530, 1838
SfaNI GCATC 4 cut(s) 133, 793, 981, 1377
SfcI CTRYAG 2 cut(s) 547, 1141
SfuI TTCGAA 1 cut(s) 1380
SmiMI CAYNNNNRTG 3 cut(s) 909, 1002, 1662
SmlI CTYRAG 3 cut(s) 134, 434, 513
SmoI CTYRAG 3 cut(s) 134, 434, 513
SseBI AGGCCT 1 cut(s) 365
SsiI CCGC 5 cut(s) 37, 265, 456, 1356, 1562
SspI AATATT 1 cut(s) 1204
SspMI CTAG 4 cut(s) 500, 645, 1463, 1739
SstI GAGCTC 1 cut(s) 1838
StuI AGGCCT 1 cut(s) 365
StyD4I CCNGG 3 cut(s) 486, 920, 972
StyI CCWWGG 3 cut(s) 1119, 1275, 1657
TaaI ACNGT 6 cut(s) 28, 453, 544, 1352, 1454, 1808
TaiI ACGT 2 cut(s) 422, 929
TaqI TCGA 5 cut(s) 285, 1094, 1380, 1838, 1842
TatI WGTACW 2 cut(s) 315, 1732
TfiI GAWTC 4 cut(s) 1364, 1401, 1684, 1985
Tru1I TTAA 7 cut(s) 360, 495, 729, 1089, 1227, 1779, 1928
Tru9I TTAA 7 cut(s) 360, 495, 729, 1089, 1227, 1779, 1928
TscAI CASTG 4 cut(s) 1058, 1219, 1459, 1836
TseFI GTSAC 1 cut(s) 1448
TseI GCWGC 1 cut(s) 1693
Tsp45I GTSAC 1 cut(s) 1448
TspDTI ATGAA 7 cut(s) 470, 606, 1125, 1414, 1508, 1622, 1905
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 4 cut(s) 1058, 1219, 1459, 1836
XapI RAATTY 6 cut(s) 95, 291, 622, 965, 1018, 1865
XbaI TCTAGA 1 cut(s) 1462
XceI RCATGY 1 cut(s) 1246
XmiI GTMKAC 1 cut(s) 1499
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 4 cut(s) 500, 645, 1463, 1739
ZraI GACGTC 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.