RLG00000017212

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017221
Physical Location & Seq
Reverse (-)
14167743 .. 14169719
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017212

Sequence Viewer

Length: 1686 bp
ATGTACTTCCCCGTCAAGCATCCGACCGTTGTTTCCCGCCTCTTTTCCTCTCGCTCTCTGCAAACCAATGTCACCCACAATTTCAAGACCCAAATTCACCAAACCCTGCACCGCCTCGTAGAGCAATGCTCCTCCATGTCACACCTCAAACAACTCCACGCCCAGATCATCCTCCACCGCCTCACCAGCGAAAACCTCACCCTCGGAAAGCTCATTTCCTTCTGCTCCGTCTCCGACGCCGGAGACCTCCGTTACGCTCACCTTGTGTTTGACCAAGTCCATGAACCCAACAAATTTATGTACAATAGTCTAATTAGAGGTTACTCAAATAGCAATGACTCATTCAAGGCTATGTCTTTGTATTATCAAATGATAAATTCCGGGCTTGCACCGAACGAGTTCACATTGCCGTTTGTTCTTAAGGTTTGCGCCGGAAAAACGGCGTATTGGGAAGGCGTGGTGGTTCATGGTCAGGCTGTTAAGCTTGGAATTGGGTGTCAAGTTTGCGTGCAAAATGGGCTTATTAATGTGTACAGTGTTTGTGGGTTGATACATTGTGCCACGAATGTGTTTGATGAAATGTCTGAGAGAAGTTTGGTATCGTGGAATTCGATGATAGGTGGGTATGCTGGAGTTGGTTCTTGGAAGGAAGCTTTTGGGTTGTTCAGGGAGATGAGAGATTTTGGCATTGAGTCTGACAAGTTCACATTGGTTAATTTACTTTCTGTTTGTTCACAGGCTTGTGATTTGGAGTTGGGGAGATATCTGCATCACTATATTGTGGTTAGTGGGATGGTGGTTGATCAGATTTTGAGAAATGCTCTGCTGGATATGTATGGTAAGTGTGGGCATTTGCCTTCGGCTCAGATGGTTTTCGACCAAATGAGTTACAAAAATGTGGTTTCTTGGACGTCGATGGTTAGGGCGTATGCTAGACATGGGCGCATTGAAGTTGCGCAGATGTTTTTTGATCAGATGCCACTGAAAAATGTGGTTTCTTGGAATTCACTAATTTTGTGTTATGTGCGAGAAGGCCAGTGCAGGGAAGCTCTGGTTCTCTTCCAGAAAATGCTCAATTCTGGTGAGGTGCCTGATGAGGCAACCTTGGTTTTCGCTCTCTCAGCCTGTAGTCAAATTGGCGATTTGGTTATTGGAAAGGAAACCCACAATTACATTAGCAACAGCAATATAGCACTCACTGTAACTCTTTCTAATTCCCTTGTAGACATGTACGCAAAATGTGGTGCTGTTGGAACTGCTATGGATCTTTTTAGTCAGATGCCAGAAAAGAATGTAGTATCATGGAACATTGTTATTGGTGCCCTTGCATTGCACGGTTATGGATCAGAAGCAATTAGGATATTTGAGCAGATGCAAGAAGGTGGAATCTGGCCTGATGAGATCACCTTCATCGGATTGCTTTCTGCTTGTAGTCACAGTGGTCTTCTAGACTTGGGGACATATTACTTTGACAGAATGAAGTCTATTTACAGAATCTCTCCTGAAATTGAGCACTATGCTTGCATGGTTGATCTGCTGGGACGACGTGGGTGCTTAGAAGAAGCGATTACACTGATGAGAGGAATGCCAATGAAGCCCGATATTGTTGTTTGGGGTGCTATGCTTGATCATCTGAAGTCTCTTGGGTATAATCCTACCGCAATGTGTGATTTAGAGGAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

562

Amino Acids

62.81

Weight (kDa)

6.2

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 96 - 144 4e-08 PPR repeat family
PPR PF01535 99 - 129 5.4e-06 PPR repeat
PPR_2 PF13041 198 - 244 8.5e-10 PPR repeat family
PPR PF01535 200 - 230 2e-08 PPR repeat
PPR PF01535 301 - 330 5e-06 PPR repeat
PPR_2 PF13041 329 - 376 1.6e-09 PPR repeat family
PPR PF01535 332 - 361 1.8e-07 PPR repeat
PPR_2 PF13041 430 - 478 2.1e-10 PPR repeat family
PPR PF01535 433 - 463 6.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017221)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14410
malus_domestica MD02G1157600.v1.1
prunus_persica Prupe.7G146100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0103131
rosa_laevigata RLG00000017212
rosa_multiflora Rmu_sc0000388.1_g000006
rosa_roxburghii Rroxscaffold_2G00139900
rosa_rugosa Rorug02G0112000
rosa_samantha Rh2AG160800 Rh2BG167500 Rh2CG167800 Rh2DG166400
rosa_wichuraiana Rw2G012590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 914
Acc16I TGCGCA 1 cut(s) 957
AccB1I GGYRCC 2 cut(s) 1087, 1319
AccI GTMKAC 1 cut(s) 1224
AciI CCGC 4 cut(s) 37, 112, 178, 1659
AclWI GGATC 2 cut(s) 1272, 1351
AcsI RAATTY 5 cut(s) 93, 293, 376, 607, 1003
AcuI CTGAAG 1 cut(s) 1655
AcyI GRCGYC 2 cut(s) 237, 911
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 4 cut(s) 5, 302, 533, 1232
AfiI CCNNNNNNNGG 1 cut(s) 1042
AflII CTTAAG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 1227
AgsI TTSAA 3 cut(s) 85, 346, 950
AjiI CACGTC 1 cut(s) 1547
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 4 cut(s) 211, 484, 653, 1049
AluI AGCT 4 cut(s) 211, 484, 653, 1049
Alw21I GWGCWC 1 cut(s) 1515
Alw26I GTCTC 3 cut(s) 235, 237, 1644
AlwI GGATC 2 cut(s) 1272, 1351
AoxI GGCC 2 cut(s) 1033, 1391
ApoI RAATTY 5 cut(s) 93, 293, 376, 607, 1003
AseI ATTAAT 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 3 cut(s) 431, 945, 958
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 7 cut(s) 64, 89, 175, 190, 251, 1094, 1396
BaeGI GKGCMC 1 cut(s) 1324
BanI GGYRCC 2 cut(s) 1087, 1319
BarI GAAGNNNNNNTAC 2 cut(s) 1472, 1504
BbsI GAAGAC 1 cut(s) 1436
Bbv12I GWGCWC 1 cut(s) 1515
BccI CCATC 3 cut(s) 787, 862, 910
BceAI ACGGC 2 cut(s) 394, 456
BcgI CGANNNNNNTGC 2 cut(s) 1533, 1567
BclI TGATCA 3 cut(s) 802, 970, 1627
BcnI CCSGG 1 cut(s) 382
BcoDI GTCTC 3 cut(s) 235, 237, 1644
BfaI CTAG 2 cut(s) 933, 1448
BfmI CTRYAG 2 cut(s) 1126, 1682
BfrI CTTAAG 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 1547
BmiI GGNNCC 2 cut(s) 1089, 1321
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 5 cut(s) 28, 778, 966, 1269, 1362
BpiI GAAGAC 1 cut(s) 1436
BplI GAGNNNNNCTC 4 cut(s) 113, 145, 805, 837
BpmI CTGGAG 1 cut(s) 651
BpuMI CCSGG 1 cut(s) 382
BsaHI GRCGYC 2 cut(s) 237, 911
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 202, 1104
Bsc4I CCNNNNNNNGG 1 cut(s) 1042
Bse1I ACTGG 1 cut(s) 1036
Bse3DI GCAATG 5 cut(s) 131, 340, 404, 1328, 1668
BseDI CCNNGG 2 cut(s) 202, 1104
BseGI GGATG 3 cut(s) 19, 168, 798
BseLI CCNNNNNNNGG 1 cut(s) 1042
BseMI GCAATG 5 cut(s) 131, 340, 404, 1328, 1668
BseMII CTCAG 3 cut(s) 576, 878, 1134
BseNI ACTGG 1 cut(s) 1036
BseRI GAGGAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 1324
BseYI CCCAGC 1 cut(s) 1537
BsgI GTGCAG 2 cut(s) 92, 1060
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 1035, 1393
BshNI GGYRCC 2 cut(s) 1087, 1319
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 1515
BsiSI CCGG 3 cut(s) 240, 381, 432
BslFI GGGAC 2 cut(s) 1471, 1554
BslI CCNNNNNNNGG 1 cut(s) 1042
BsmAI GTCTC 3 cut(s) 235, 237, 1644
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 1471, 1554
BsmI GAATGC 1 cut(s) 1590
BsnI GGCC 2 cut(s) 1035, 1393
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 1324, 1515
Bsp1407I TGTACA 2 cut(s) 300, 531
Bsp143I GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
BspACI CCGC 4 cut(s) 37, 112, 178, 1659
BspANI GGCC 2 cut(s) 1035, 1393
BspCNI CTCAG 3 cut(s) 577, 877, 1133
BspLI GGNNCC 2 cut(s) 1089, 1321
BspPI GGATC 2 cut(s) 1272, 1351
BspT107I GGYRCC 2 cut(s) 1087, 1319
BspTI CTTAAG 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 237
BsrDI GCAATG 5 cut(s) 131, 340, 404, 1328, 1668
BsrGI TGTACA 2 cut(s) 300, 531
BsrI ACTGG 1 cut(s) 1036
BssECI CCNNGG 2 cut(s) 202, 1104
BssMI GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
BssNI GRCGYC 2 cut(s) 237, 911
BssT1I CCWWGG 1 cut(s) 1104
Bst4CI ACNGT 6 cut(s) 28, 536, 1201, 1337, 1439, 1683
Bst6I CTCTTC 1 cut(s) 1064
BstACI GRCGYC 2 cut(s) 237, 911
BstAFI CTTAAG 1 cut(s) 419
BstAUI TGTACA 2 cut(s) 300, 531
BstC8I GCNNGC 3 cut(s) 387, 509, 1522
BstDEI CTNAG 4 cut(s) 585, 864, 1120, 1555
BstF5I GGATG 3 cut(s) 19, 168, 798
BstHHI GCGC 3 cut(s) 431, 945, 958
BstKTI GATC 8 cut(s) 168, 805, 973, 1267, 1346, 1404, 1534, 1630
BstMAI GTCTC 3 cut(s) 235, 237, 1644
BstMBI GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 4 cut(s) 186, 517, 1121, 1594
BstNSI RCATGY 1 cut(s) 1231
BstSCI CCNGG 1 cut(s) 380
BstSFI CTRYAG 2 cut(s) 1126, 1682
BstSLI GKGCMC 1 cut(s) 1324
BstV2I GAAGAC 1 cut(s) 1436
BstX2I RGATCY 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 1264
BsuRI GGCC 2 cut(s) 1035, 1393
BtrI CACGTC 1 cut(s) 1547
BtsCI GGATG 3 cut(s) 19, 168, 798
BtsIMutI CAGTG 6 cut(s) 541, 980, 1043, 1197, 1444, 1571
Cac8I GCNNGC 3 cut(s) 387, 509, 1522
CfoI GCGC 3 cut(s) 431, 945, 958
CseI GACGC 1 cut(s) 245
Csp6I GTAC 4 cut(s) 4, 301, 532, 1231
CviAII CATG 7 cut(s) 136, 281, 467, 938, 1228, 1302, 1525
CviQI GTAC 4 cut(s) 4, 301, 532, 1231
DdeI CTNAG 4 cut(s) 585, 864, 1120, 1555
DpnI GATC 8 cut(s) 167, 804, 972, 1266, 1345, 1403, 1533, 1629
DpnII GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
DraIII CACNNNGTG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 1064
EarI CTCTTC 1 cut(s) 1064
Eco130I CCWWGG 1 cut(s) 1104
Eco31I GGTCTC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 764
Eco57I CTGAAG 1 cut(s) 1655
EcoRI GAATTC 2 cut(s) 607, 1003
EcoRV GATATC 1 cut(s) 764
EcoT14I CCWWGG 1 cut(s) 1104
ErhI CCWWGG 1 cut(s) 1104
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 7 cut(s) 139, 284, 470, 941, 1231, 1305, 1528
FaqI GGGAC 2 cut(s) 1471, 1554
FatI CATG 7 cut(s) 135, 280, 466, 937, 1227, 1301, 1524
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 3 cut(s) 802, 970, 1627
FblI GTMKAC 1 cut(s) 1224
FokI GGATG 3 cut(s) 6, 155, 805
FspBI CTAG 2 cut(s) 933, 1448
FspI TGCGCA 1 cut(s) 957
GlaI GCGC 3 cut(s) 430, 944, 957
GsaI CCCAGC 1 cut(s) 1541
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 1035, 1393
HapII CCGG 3 cut(s) 240, 381, 432
HgaI GACGC 1 cut(s) 245
HhaI GCGC 3 cut(s) 431, 945, 958
Hin1I GRCGYC 2 cut(s) 237, 911
Hin1II CATG 7 cut(s) 139, 284, 470, 941, 1231, 1305, 1528
Hin6I GCGC 3 cut(s) 429, 943, 956
HinP1I GCGC 3 cut(s) 429, 943, 956
HindIII AAGCTT 2 cut(s) 482, 651
HinfI GANTC 4 cut(s) 338, 692, 1386, 1494
HpaII CCGG 3 cut(s) 240, 381, 432
HphI GGTGA 7 cut(s) 64, 89, 175, 190, 251, 1094, 1396
Hpy166II GTNNAC 5 cut(s) 402, 532, 705, 734, 1225
Hpy188III TCNNGA 4 cut(s) 85, 1063, 1448, 1502
Hpy8I GTNNAC 5 cut(s) 402, 532, 705, 734, 1225
Hpy99I CGWCG 3 cut(s) 239, 916, 1548
HpyAV CCTTC 7 cut(s) 229, 446, 640, 867, 1025, 1373, 1417
HpyCH4III ACNGT 6 cut(s) 28, 536, 1201, 1337, 1439, 1683
HpyCH4IV ACGT 2 cut(s) 911, 1546
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 517, 1121, 1594
HpyF3I CTNAG 4 cut(s) 585, 864, 1120, 1555
HpySE526I ACGT 2 cut(s) 911, 1546
Hsp92I GRCGYC 2 cut(s) 237, 911
Hsp92II CATG 7 cut(s) 139, 284, 470, 941, 1231, 1305, 1528
HspAI GCGC 3 cut(s) 429, 943, 956
Ksp22I TGATCA 3 cut(s) 802, 970, 1627
Kzo9I GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
LmnI GCTCC 2 cut(s) 134, 230
LweI GCATC 5 cut(s) 28, 778, 966, 1269, 1362
MaeI CTAG 2 cut(s) 933, 1448
MaeII ACGT 2 cut(s) 911, 1546
MaeIII GTNAC 7 cut(s) 70, 138, 251, 320, 887, 1201, 1433
MalI GATC 8 cut(s) 167, 804, 972, 1266, 1345, 1403, 1533, 1629
MboI GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
MboII GAAGA 3 cut(s) 1051, 1436, 1571
MflI RGATCY 1 cut(s) 1264
MhlI GDGCHC 2 cut(s) 1324, 1515
MlyI GAGTC 2 cut(s) 332, 701
MmeI TCCRAC 3 cut(s) 47, 258, 1231
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 4 cut(s) 420, 480, 525, 714
MslI CAYNNNNRTG 2 cut(s) 566, 1338
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 3 cut(s) 240, 381, 432
MspR9I CCNGG 1 cut(s) 382
Mva1269I GAATGC 1 cut(s) 1590
MwoI GCNNNNNNNGC 4 cut(s) 186, 517, 1121, 1594
NciI CCSGG 1 cut(s) 382
NdeII GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
NlaIII CATG 7 cut(s) 139, 284, 470, 941, 1231, 1305, 1528
NlaIV GGNNCC 2 cut(s) 1089, 1321
NmuCI GTSAC 3 cut(s) 70, 138, 1433
NsbI TGCGCA 1 cut(s) 957
NspI RCATGY 1 cut(s) 1231
OliI CACNNNNGTG 1 cut(s) 566
PciI ACATGT 1 cut(s) 1227
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PctI GAATGC 1 cut(s) 1590
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 1386, 1494
PflFI GACNNNGTC 1 cut(s) 275
PleI GAGTC 2 cut(s) 332, 700
PpsI GAGTC 2 cut(s) 332, 700
PscI ACATGT 1 cut(s) 1227
PshBI ATTAAT 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 1537
PspN4I GGNNCC 2 cut(s) 1089, 1321
PsuI RGATCY 1 cut(s) 1264
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 4 cut(s) 5, 302, 533, 1232
RsaNI GTAC 4 cut(s) 4, 301, 532, 1231
RseI CAYNNNNRTG 2 cut(s) 566, 1338
SaqAI TTAA 4 cut(s) 420, 480, 525, 714
Sau3AI GATC 8 cut(s) 165, 802, 970, 1264, 1343, 1401, 1531, 1627
SchI GAGTC 2 cut(s) 332, 701
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 2 cut(s) 1324, 1515
SfaNI GCATC 5 cut(s) 28, 778, 966, 1269, 1362
SfcI CTRYAG 2 cut(s) 1126, 1682
SmiMI CAYNNNNRTG 2 cut(s) 566, 1338
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SsiI CCGC 4 cut(s) 37, 112, 178, 1659
SspMI CTAG 2 cut(s) 933, 1448
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 1 cut(s) 1104
TaaI ACNGT 6 cut(s) 28, 536, 1201, 1337, 1439, 1683
TaiI ACGT 2 cut(s) 914, 1549
TaqI TCGA 3 cut(s) 611, 876, 914
TatI WGTACW 3 cut(s) 3, 300, 531
TfiI GAWTC 2 cut(s) 1386, 1494
Tru1I TTAA 4 cut(s) 420, 480, 525, 714
Tru9I TTAA 4 cut(s) 420, 480, 525, 714
TscAI CASTG 6 cut(s) 541, 987, 1043, 1204, 1444, 1578
TseFI GTSAC 3 cut(s) 70, 138, 1433
Tsp45I GTSAC 3 cut(s) 70, 138, 1433
TspDTI ATGAA 6 cut(s) 297, 455, 591, 1399, 1493, 1607
TspGWI ACGGA 2 cut(s) 217, 239
TspRI CASTG 6 cut(s) 541, 987, 1043, 1204, 1444, 1578
Tth111I GACNNNGTC 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 419
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 5 cut(s) 93, 293, 376, 607, 1003
XbaI TCTAGA 1 cut(s) 1447
XceI RCATGY 1 cut(s) 1231
XmiI GTMKAC 1 cut(s) 1224
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 2 cut(s) 933, 1448
ZraI GACGTC 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.