Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g14410 |
| malus_domestica | MD02G1157600.v1.1 |
| prunus_persica | Prupe.7G146100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0103131 |
| rosa_laevigata | RLG00000017212 |
| rosa_multiflora | Rmu_sc0000388.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00139900 |
| rosa_rugosa | Rorug02G0112000 |
| rosa_samantha | Rh2AG160800 Rh2BG167500 Rh2CG167800 Rh2DG166400 |
| rosa_wichuraiana | Rw2G012590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1403 |
| AatII | GACGTC | 1 cut(s) | 947 |
| Acc36I | ACCTGC | 1 cut(s) | 1403 |
| AccI | GTMKAC | 2 cut(s) | 564, 1964 |
| AccII | CGCG | 1 cut(s) | 290 |
| AccIII | TCCGGA | 1 cut(s) | 585 |
| AciI | CCGC | 5 cut(s) | 12, 37, 654, 1079, 1473 |
| AclI | AACGTT | 1 cut(s) | 1341 |
| AclWI | GGATC | 5 cut(s) | 577, 1095, 1666, 1679, 1959 |
| AcoI | YGGCCR | 1 cut(s) | 880 |
| AcsI | RAATTY | 9 cut(s) | 112, 242, 640, 840, 983, 995, 1036, 1701, 1883 |
| AcuI | CTGAAG | 1 cut(s) | 1727 |
| AcyI | GRCGYC | 1 cut(s) | 944 |
| AdeI | CACNNNGTG | 1 cut(s) | 1232 |
| AfaI | GTAC | 3 cut(s) | 335, 395, 1752 |
| AfeI | AGCGCT | 1 cut(s) | 592 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 379, 1075, 1446 |
| AflII | CTTAAG | 1 cut(s) | 452 |
| AflIII | ACRYGT | 1 cut(s) | 1260 |
| AgsI | TTSAA | 8 cut(s) | 118, 830, 983, 1041, 1399, 1505, 1862, 1917 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 613 |
| AjnI | CCWGG | 1 cut(s) | 990 |
| AleI | CACNNNNGTG | 1 cut(s) | 1371 |
| AluBI | AGCT | 7 cut(s) | 295, 488, 686, 1133, 1714, 1778, 1854 |
| AluI | AGCT | 7 cut(s) | 295, 488, 686, 1133, 1714, 1778, 1854 |
| Alw21I | GWGCWC | 2 cut(s) | 1548, 1856 |
| Alw26I | GTCTC | 3 cut(s) | 347, 534, 1897 |
| AlwI | GGATC | 5 cut(s) | 577, 1095, 1666, 1679, 1959 |
| Aor13HI | TCCGGA | 1 cut(s) | 585 |
| Aor51HI | AGCGCT | 1 cut(s) | 592 |
| AoxI | GGCC | 6 cut(s) | 725, 880, 1066, 1080, 1353, 1424 |
| ApaI | GGGCCC | 1 cut(s) | 1357 |
| ApeKI | GCWGC | 2 cut(s) | 292, 1711 |
| ApoI | RAATTY | 9 cut(s) | 112, 242, 640, 840, 983, 995, 1036, 1701, 1883 |
| AseI | ATTAAT | 1 cut(s) | 558 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 670 |
| AspLEI | GCGC | 2 cut(s) | 292, 593 |
| AspS9I | GGNCC | 5 cut(s) | 725, 1297, 1353, 1354, 1425 |
| AsuHPI | GGTGA | 9 cut(s) | 50, 97, 208, 223, 730, 1184, 1429, 1524, 1784 |
| AsuII | TTCGAA | 1 cut(s) | 1380 |
| AvaII | GGWCC | 1 cut(s) | 1297 |
| BaeGI | GKGCMC | 1 cut(s) | 1357 |
| BalI | TGGCCA | 1 cut(s) | 882 |
| BamHI | GGATCC | 1 cut(s) | 1671 |
| BanII | GRGCYC | 4 cut(s) | 125, 978, 1357, 1856 |
| BbsI | GAAGAC | 1 cut(s) | 1469 |
| Bbv12I | GWGCWC | 2 cut(s) | 1548, 1856 |
| BbvI | GCAGC | 2 cut(s) | 304, 1723 |
| BccI | CCATC | 4 cut(s) | 69, 1779, 1817, 1862 |
| BciT130I | CCWGG | 1 cut(s) | 992 |
| BclI | TGATCA | 3 cut(s) | 835, 1003, 1939 |
| BcoDI | GTCTC | 3 cut(s) | 347, 534, 1897 |
| BfaI | CTAG | 3 cut(s) | 152, 663, 1481 |
| BfmI | CTRYAG | 1 cut(s) | 1159 |
| BfoI | RGCGCY | 1 cut(s) | 594 |
| BfrI | CTTAAG | 1 cut(s) | 452 |
| BfuAI | ACCTGC | 1 cut(s) | 1403 |
| BisI | GCNGC | 3 cut(s) | 293, 1080, 1712 |
| BlsI | GCNGC | 3 cut(s) | 294, 1081, 1713 |
| Bme1390I | CCNGG | 1 cut(s) | 992 |
| Bme18I | GGWCC | 1 cut(s) | 1297 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 613 |
| BmgT120I | GGNCC | 5 cut(s) | 725, 1297, 1353, 1354, 1425 |
| BmiI | GGNNCC | 3 cut(s) | 1354, 1355, 1673 |
| BmrFI | CCNGG | 1 cut(s) | 992 |
| BmrI | ACTGGG | 3 cut(s) | 1224, 1455, 1977 |
| BmsI | GCATC | 3 cut(s) | 811, 999, 1395 |
| BmuI | ACTGGG | 3 cut(s) | 1224, 1455, 1977 |
| BpiI | GAAGAC | 1 cut(s) | 1469 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 146, 178, 838, 870 |
| Bpu14I | TTCGAA | 1 cut(s) | 1380 |
| BpuEI | CTTGAG | 2 cut(s) | 164, 516 |
| BsaHI | GRCGYC | 1 cut(s) | 944 |
| BsaI | GGTCTC | 1 cut(s) | 534 |
| BsaJI | CCNNGG | 7 cut(s) | 235, 741, 990, 1083, 1137, 1293, 1675 |
| BsaWI | WCCGGW | 1 cut(s) | 585 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 379, 1075, 1446 |
| Bse118I | RCCGGY | 1 cut(s) | 272 |
| Bse1I | ACTGG | 3 cut(s) | 1230, 1450, 1972 |
| Bse3DI | GCAATG | 2 cut(s) | 164, 1225 |
| BseAI | TCCGGA | 1 cut(s) | 585 |
| BseBI | CCWGG | 1 cut(s) | 992 |
| BseDI | CCNNGG | 7 cut(s) | 235, 741, 990, 1083, 1137, 1293, 1675 |
| BseGI | GGATG | 3 cut(s) | 201, 711, 1146 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 379, 1075, 1446 |
| BseMI | GCAATG | 2 cut(s) | 164, 1225 |
| BseMII | CTCAG | 3 cut(s) | 609, 836, 1322 |
| BseNI | ACTGG | 3 cut(s) | 1230, 1450, 1972 |
| BseRI | GAGGAG | 2 cut(s) | 154, 637 |
| BseSI | GKGCMC | 1 cut(s) | 1357 |
| BseXI | GCAGC | 2 cut(s) | 304, 1723 |
| BseYI | CCCAGC | 2 cut(s) | 464, 1570 |
| BsgI | GTGCAG | 3 cut(s) | 56, 125, 1349 |
| Bsh1236I | CGCG | 1 cut(s) | 290 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshFI | GGCC | 6 cut(s) | 727, 882, 1068, 1082, 1355, 1426 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1548, 1856 |
| BsiSI | CCGG | 2 cut(s) | 273, 586 |
| BslFI | GGGAC | 2 cut(s) | 68, 804 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 379, 1075, 1446 |
| BsmAI | GTCTC | 3 cut(s) | 347, 534, 1897 |
| BsmFI | GGGAC | 2 cut(s) | 68, 804 |
| BsmI | GAATGC | 2 cut(s) | 1107, 1623 |
| BsnI | GGCC | 6 cut(s) | 727, 882, 1068, 1082, 1355, 1426 |
| Bso31I | GGTCTC | 1 cut(s) | 534 |
| Bsp119I | TTCGAA | 1 cut(s) | 1380 |
| Bsp120I | GGGCCC | 1 cut(s) | 1353 |
| Bsp1286I | GDGCHC | 5 cut(s) | 125, 978, 1357, 1548, 1856 |
| Bsp13I | TCCGGA | 1 cut(s) | 585 |
| Bsp1407I | TGTACA | 1 cut(s) | 333 |
| Bsp19I | CCATGG | 2 cut(s) | 1293, 1675 |
| BspACI | CCGC | 5 cut(s) | 12, 37, 654, 1079, 1473 |
| BspANI | GGCC | 6 cut(s) | 727, 882, 1068, 1082, 1355, 1426 |
| BspCNI | CTCAG | 3 cut(s) | 610, 837, 1321 |
| BspEI | TCCGGA | 1 cut(s) | 585 |
| BspFNI | CGCG | 1 cut(s) | 290 |
| BspHI | TCATGA | 1 cut(s) | 313 |
| BspLI | GGNNCC | 3 cut(s) | 1354, 1355, 1673 |
| BspMI | ACCTGC | 1 cut(s) | 1403 |
| BspPI | GGATC | 5 cut(s) | 577, 1095, 1666, 1679, 1959 |
| BspQI | GCTCTTC | 1 cut(s) | 861 |
| BspT104I | TTCGAA | 1 cut(s) | 1380 |
| BspTI | CTTAAG | 1 cut(s) | 452 |
| BspTNI | GGTCTC | 1 cut(s) | 534 |
| BsrDI | GCAATG | 2 cut(s) | 164, 1225 |
| BsrFI | RCCGGY | 1 cut(s) | 272 |
| BsrGI | TGTACA | 1 cut(s) | 333 |
| BsrI | ACTGG | 3 cut(s) | 1230, 1450, 1972 |
| BssAI | RCCGGY | 1 cut(s) | 272 |
| BssECI | CCNNGG | 7 cut(s) | 235, 741, 990, 1083, 1137, 1293, 1675 |
| BssNI | GRCGYC | 1 cut(s) | 944 |
| BssT1I | CCWWGG | 5 cut(s) | 741, 1083, 1137, 1293, 1675 |
| Bst2UI | CCWGG | 1 cut(s) | 992 |
| Bst4CI | ACNGT | 7 cut(s) | 28, 82, 569, 771, 795, 1202, 1370 |
| Bst6I | CTCTTC | 2 cut(s) | 861, 1097 |
| BstACI | GRCGYC | 1 cut(s) | 944 |
| BstAFI | CTTAAG | 1 cut(s) | 452 |
| BstAUI | TGTACA | 1 cut(s) | 333 |
| BstBI | TTCGAA | 1 cut(s) | 1380 |
| BstC8I | GCNNGC | 3 cut(s) | 274, 542, 1410 |
| BstDEI | CTNAG | 4 cut(s) | 618, 845, 873, 1308 |
| BstDSI | CCRYGG | 2 cut(s) | 1293, 1675 |
| BstF5I | GGATG | 3 cut(s) | 201, 711, 1146 |
| BstFNI | CGCG | 1 cut(s) | 290 |
| BstH2I | RGCGCY | 1 cut(s) | 594 |
| BstHHI | GCGC | 2 cut(s) | 292, 593 |
| BstMAI | GTCTC | 3 cut(s) | 347, 534, 1897 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1627, 1982 |
| BstNI | CCWGG | 1 cut(s) | 992 |
| BstNSI | RCATGY | 1 cut(s) | 1264 |
| BstSCI | CCNGG | 1 cut(s) | 990 |
| BstSFI | CTRYAG | 1 cut(s) | 1159 |
| BstSLI | GKGCMC | 1 cut(s) | 1357 |
| BstUI | CGCG | 1 cut(s) | 290 |
| BstV1I | GCAGC | 2 cut(s) | 304, 1723 |
| BstV2I | GAAGAC | 1 cut(s) | 1469 |
| BstX2I | RGATCY | 2 cut(s) | 1087, 1671 |
| BstYI | RGATCY | 2 cut(s) | 1087, 1671 |
| BsuRI | GGCC | 6 cut(s) | 727, 882, 1068, 1082, 1355, 1426 |
| BtgI | CCRYGG | 2 cut(s) | 1293, 1675 |
| BtsCI | GGATG | 3 cut(s) | 201, 711, 1146 |
| BtsI | GCAGTG | 2 cut(s) | 1361, 1854 |
| BtsIMutI | CAGTG | 6 cut(s) | 78, 1013, 1237, 1361, 1443, 1854 |
| BveI | ACCTGC | 1 cut(s) | 1403 |
| Cac8I | GCNNGC | 3 cut(s) | 274, 542, 1410 |
| CciI | TCATGA | 1 cut(s) | 313 |
| CfoI | GCGC | 2 cut(s) | 292, 593 |
| Cfr10I | RCCGGY | 1 cut(s) | 272 |
| Cfr13I | GGNCC | 5 cut(s) | 725, 1297, 1353, 1354, 1425 |
| Csp6I | GTAC | 3 cut(s) | 334, 394, 1751 |
| CviQI | GTAC | 3 cut(s) | 334, 394, 1751 |
| DdeI | CTNAG | 4 cut(s) | 618, 845, 873, 1308 |
| DraIII | CACNNNGTG | 1 cut(s) | 1232 |
| DriI | GACNNNNNGTC | 1 cut(s) | 613 |
| EaeI | YGGCCR | 1 cut(s) | 880 |
| Eam1104I | CTCTTC | 2 cut(s) | 861, 1097 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 613 |
| EarI | CTCTTC | 2 cut(s) | 861, 1097 |
| Ecl136II | GAGCTC | 1 cut(s) | 1854 |
| Eco130I | CCWWGG | 5 cut(s) | 741, 1083, 1137, 1293, 1675 |
| Eco24I | GRGCYC | 4 cut(s) | 125, 978, 1357, 1856 |
| Eco31I | GGTCTC | 1 cut(s) | 534 |
| Eco47I | GGWCC | 1 cut(s) | 1297 |
| Eco47III | AGCGCT | 1 cut(s) | 592 |
| Eco53kI | GAGCTC | 1 cut(s) | 1854 |
| Eco57I | CTGAAG | 1 cut(s) | 1727 |
| EcoICRI | GAGCTC | 1 cut(s) | 1854 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1353, 1354 |
| EcoRI | GAATTC | 2 cut(s) | 640, 1036 |
| EcoRII | CCWGG | 1 cut(s) | 990 |
| EcoT14I | CCWWGG | 5 cut(s) | 741, 1083, 1137, 1293, 1675 |
| EcoT38I | GRGCYC | 4 cut(s) | 125, 978, 1357, 1856 |
| ErhI | CCWWGG | 5 cut(s) | 741, 1083, 1137, 1293, 1675 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 725, 757 |
| FaqI | GGGAC | 2 cut(s) | 68, 804 |
| FauI | CCCGC | 2 cut(s) | 44, 647 |
| FauNDI | CATATG | 1 cut(s) | 961 |
| FbaI | TGATCA | 3 cut(s) | 835, 1003, 1939 |
| FblI | GTMKAC | 2 cut(s) | 564, 1964 |
| Fnu4HI | GCNGC | 3 cut(s) | 293, 1080, 1712 |
| FokI | GGATG | 3 cut(s) | 188, 718, 1133 |
| FriOI | GRGCYC | 4 cut(s) | 125, 978, 1357, 1856 |
| Fsp4HI | GCNGC | 3 cut(s) | 293, 1080, 1712 |
| FspBI | CTAG | 3 cut(s) | 152, 663, 1481 |
| GlaI | GCGC | 2 cut(s) | 291, 592 |
| GluI | GCNGC | 3 cut(s) | 293, 1080, 1712 |
| GsaI | CCCAGC | 2 cut(s) | 468, 1574 |
| HaeII | RGCGCY | 1 cut(s) | 594 |
| HaeIII | GGCC | 6 cut(s) | 727, 882, 1068, 1082, 1355, 1426 |
| HapII | CCGG | 2 cut(s) | 273, 586 |
| HhaI | GCGC | 2 cut(s) | 292, 593 |
| Hin1I | GRCGYC | 1 cut(s) | 944 |
| Hin6I | GCGC | 2 cut(s) | 290, 591 |
| HinP1I | GCGC | 2 cut(s) | 290, 591 |
| HincII | GTYRAC | 1 cut(s) | 265 |
| HindII | GTYRAC | 1 cut(s) | 265 |
| HinfI | GANTC | 6 cut(s) | 625, 919, 1377, 1419, 1514, 1830 |
| HpaII | CCGG | 2 cut(s) | 273, 586 |
| HphI | GGTGA | 9 cut(s) | 50, 97, 208, 223, 730, 1184, 1429, 1524, 1784 |
| Hpy166II | GTNNAC | 6 cut(s) | 265, 435, 565, 738, 767, 1965 |
| Hpy188I | TCNGA | 8 cut(s) | 239, 597, 619, 846, 1008, 1061, 1311, 1707 |
| Hpy188III | TCNNGA | 8 cut(s) | 118, 314, 414, 586, 860, 1481, 1759, 1807 |
| Hpy8I | GTNNAC | 6 cut(s) | 265, 435, 565, 738, 767, 1965 |
| HpyAV | CCTTC | 5 cut(s) | 16, 262, 1058, 1450, 1721 |
| HpyCH4III | ACNGT | 7 cut(s) | 28, 82, 569, 771, 795, 1202, 1370 |
| HpyCH4IV | ACGT | 3 cut(s) | 437, 944, 1341 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1627, 1982 |
| HpyF3I | CTNAG | 4 cut(s) | 618, 845, 873, 1308 |
| HpySE526I | ACGT | 3 cut(s) | 437, 944, 1341 |
| Hsp92I | GRCGYC | 1 cut(s) | 944 |
| HspAI | GCGC | 2 cut(s) | 290, 591 |
| Kpn2I | TCCGGA | 1 cut(s) | 585 |
| KroI | GCCGGC | 1 cut(s) | 272 |
| KroNI | GCCGGC | 1 cut(s) | 274 |
| Ksp22I | TGATCA | 3 cut(s) | 835, 1003, 1939 |
| LguI | GCTCTTC | 1 cut(s) | 861 |
| LmnI | GCTCC | 6 cut(s) | 167, 263, 588, 683, 1859, 1981 |
| Lsp1109I | GCAGC | 2 cut(s) | 304, 1723 |
| LweI | GCATC | 3 cut(s) | 811, 999, 1395 |
| MaeI | CTAG | 3 cut(s) | 152, 663, 1481 |
| MaeII | ACGT | 3 cut(s) | 437, 944, 1341 |
| MaeIII | GTNAC | 5 cut(s) | 438, 1202, 1222, 1234, 1466 |
| MboII | GAAGA | 6 cut(s) | 848, 1084, 1469, 1604, 1802, 1813 |
| MflI | RGATCY | 2 cut(s) | 1087, 1671 |
| MhlI | GDGCHC | 5 cut(s) | 125, 978, 1357, 1548, 1856 |
| MlsI | TGGCCA | 1 cut(s) | 882 |
| MluNI | TGGCCA | 1 cut(s) | 882 |
| MlyI | GAGTC | 4 cut(s) | 634, 913, 1523, 1839 |
| MmeI | TCCRAC | 2 cut(s) | 1264, 1704 |
| Mox20I | TGGCCA | 1 cut(s) | 882 |
| MroI | TCCGGA | 1 cut(s) | 585 |
| MroNI | GCCGGC | 1 cut(s) | 272 |
| MroXI | GAANNNNTTC | 1 cut(s) | 670 |
| MscI | TGGCCA | 1 cut(s) | 882 |
| MslI | CAYNNNNRTG | 4 cut(s) | 312, 927, 1371, 1680 |
| Msp20I | TGGCCA | 1 cut(s) | 882 |
| MspA1I | CMGCKG | 1 cut(s) | 1473 |
| MspCI | CTTAAG | 1 cut(s) | 452 |
| MspI | CCGG | 2 cut(s) | 273, 586 |
| MspR9I | CCNGG | 1 cut(s) | 992 |
| Mva1269I | GAATGC | 2 cut(s) | 1107, 1623 |
| MvaI | CCWGG | 1 cut(s) | 992 |
| MvnI | CGCG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1627, 1982 |
| NaeI | GCCGGC | 1 cut(s) | 274 |
| NcoI | CCATGG | 2 cut(s) | 1293, 1675 |
| NdeI | CATATG | 1 cut(s) | 961 |
| NgoMIV | GCCGGC | 1 cut(s) | 272 |
| NlaIV | GGNNCC | 3 cut(s) | 1354, 1355, 1673 |
| NmuCI | GTSAC | 1 cut(s) | 1466 |
| NspI | RCATGY | 1 cut(s) | 1264 |
| NspV | TTCGAA | 1 cut(s) | 1380 |
| OliI | CACNNNNGTG | 1 cut(s) | 1371 |
| PagI | TCATGA | 1 cut(s) | 313 |
| PaqCI | CACCTGC | 1 cut(s) | 1403 |
| PciI | ACATGT | 1 cut(s) | 1260 |
| PciSI | GCTCTTC | 1 cut(s) | 861 |
| PctI | GAATGC | 2 cut(s) | 1107, 1623 |
| PdiI | GCCGGC | 1 cut(s) | 274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 670 |
| PfeI | GAWTC | 2 cut(s) | 1377, 1419 |
| PkrI | GCNGC | 3 cut(s) | 294, 1081, 1713 |
| PleI | GAGTC | 4 cut(s) | 633, 913, 1522, 1838 |
| PpsI | GAGTC | 4 cut(s) | 633, 913, 1522, 1838 |
| PscI | ACATGT | 1 cut(s) | 1260 |
| PshBI | ATTAAT | 1 cut(s) | 558 |
| Psp124BI | GAGCTC | 1 cut(s) | 1856 |
| Psp1406I | AACGTT | 1 cut(s) | 1341 |
| Psp6I | CCWGG | 1 cut(s) | 990 |
| PspFI | CCCAGC | 2 cut(s) | 464, 1570 |
| PspGI | CCWGG | 1 cut(s) | 990 |
| PspN4I | GGNNCC | 3 cut(s) | 1354, 1355, 1673 |
| PspOMI | GGGCCC | 1 cut(s) | 1353 |
| PspPI | GGNCC | 5 cut(s) | 725, 1297, 1353, 1354, 1425 |
| PsuI | RGATCY | 2 cut(s) | 1087, 1671 |
| RsaI | GTAC | 3 cut(s) | 335, 395, 1752 |
| RsaNI | GTAC | 3 cut(s) | 334, 394, 1751 |
| RseI | CAYNNNNRTG | 4 cut(s) | 312, 927, 1371, 1680 |
| SacI | GAGCTC | 1 cut(s) | 1856 |
| SapI | GCTCTTC | 1 cut(s) | 861 |
| SatI | GCNGC | 3 cut(s) | 293, 1080, 1712 |
| Sau96I | GGNCC | 5 cut(s) | 725, 1297, 1353, 1354, 1425 |
| SchI | GAGTC | 4 cut(s) | 634, 913, 1523, 1839 |
| ScrFI | CCNGG | 1 cut(s) | 992 |
| SduI | GDGCHC | 5 cut(s) | 125, 978, 1357, 1548, 1856 |
| SfaNI | GCATC | 3 cut(s) | 811, 999, 1395 |
| SfcI | CTRYAG | 1 cut(s) | 1159 |
| SfuI | TTCGAA | 1 cut(s) | 1380 |
| SinI | GGWCC | 1 cut(s) | 1297 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 312, 927, 1371, 1680 |
| SmlI | CTYRAG | 3 cut(s) | 179, 452, 531 |
| SmoI | CTYRAG | 3 cut(s) | 179, 452, 531 |
| SsiI | CCGC | 5 cut(s) | 12, 37, 654, 1079, 1473 |
| SspMI | CTAG | 3 cut(s) | 152, 663, 1481 |
| SstI | GAGCTC | 1 cut(s) | 1856 |
| StyD4I | CCNGG | 1 cut(s) | 990 |
| StyI | CCWWGG | 5 cut(s) | 741, 1083, 1137, 1293, 1675 |
| TaaI | ACNGT | 7 cut(s) | 28, 82, 569, 771, 795, 1202, 1370 |
| TaiI | ACGT | 3 cut(s) | 440, 947, 1344 |
| TaqI | TCGA | 6 cut(s) | 303, 581, 644, 913, 1380, 1760 |
| TatI | WGTACW | 3 cut(s) | 333, 393, 1750 |
| TauI | GCSGC | 1 cut(s) | 1082 |
| TfiI | GAWTC | 2 cut(s) | 1377, 1419 |
| TscAI | CASTG | 6 cut(s) | 85, 1020, 1237, 1368, 1450, 1854 |
| TseFI | GTSAC | 1 cut(s) | 1466 |
| TseI | GCWGC | 2 cut(s) | 292, 1711 |
| Tsp45I | GTSAC | 1 cut(s) | 1466 |
| TspGWI | ACGGA | 2 cut(s) | 250, 1964 |
| TspRI | CASTG | 6 cut(s) | 85, 1020, 1237, 1368, 1450, 1854 |
| Vha464I | CTTAAG | 1 cut(s) | 452 |
| VpaK11BI | GGWCC | 1 cut(s) | 1297 |
| VspI | ATTAAT | 1 cut(s) | 558 |
| XapI | RAATTY | 9 cut(s) | 112, 242, 640, 840, 983, 995, 1036, 1701, 1883 |
| XbaI | TCTAGA | 1 cut(s) | 1480 |
| XceI | RCATGY | 1 cut(s) | 1264 |
| XmiI | GTMKAC | 2 cut(s) | 564, 1964 |
| XmnI | GAANNNNTTC | 1 cut(s) | 670 |
| XspI | CTAG | 3 cut(s) | 152, 663, 1481 |
| ZraI | GACGTC | 1 cut(s) | 945 |